Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001701.1

Orthogroup ID

OG0011487

Physical Location & Seq

Genomic Coordinates Forward (+)

136377 .. 136846

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001701.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgcaggccgcaaaggaaaagcttagcaatctggccagctcggccaaggagcacgtcaatatctacaaagccaaagtagaagaaaagttggagagagcaaaagctaggaataaggaagagaagaagatggcgagagagcgtcggaaagtgaaggaggccagtgcaaagatggagctgcataaagctaaagccaggcatgcagagaagaaattaggtgccaaactatctcatgggcatgggatattcaactattaccacccaccaccagcaccacttcataatcatcaacatcaacatgggcaccagcatctgggaacaactaatatgatcccagcttcaaatccgcatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009791 GO:0010035 GO:0010154 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0061458 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_1

Protein Analysis

117

Amino Acids

13.31

Weight (kDa)

10.12

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35300
fragaria_vesca	FvH4_5g21820 FvH4_5g21830
malus_domestica	MD06G1032700.v1.1
prunus_persica	Prupe.5G039300_v2.0.a1 Prupe.5G039400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0209341
rosa_laevigata	RLG00000003143
rosa_multiflora	Rmu_sc0001701.1_g000025 Rmu_sc0001701.1_g000026
rosa_roxburghii	Rroxscaffold_3G00249510
rosa_rugosa	Rorug07G0111700 Rorug07G0111800
rosa_samantha	Rh7AG245600 Rh7BG240700 Rh7CG260900 Rh7CG261200 Rh7DG252200 Rh7DG252300
rosa_wichuraiana	Rw7G020800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 300
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	2 cut(s)	9, 344
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	2 cut(s)	33, 42
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	247, 339
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	6 cut(s)	22, 39, 104, 175, 185, 335
AluI	AGCT	6 cut(s)	22, 39, 104, 175, 185, 335
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	4 cut(s)	6, 33, 42, 156
ApeKI	GCWGC	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	35
BanI	GGYRCC	2 cut(s)	215, 300
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	121, 163
BciT130I	CCWGG	1 cut(s)	193
BfaI	CTAG	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	9, 176
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	2 cut(s)	10, 177
Bme1390I	CCNGG	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	217, 302
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	162
BseYI	CCCAGC	1 cut(s)	331
BshFI	GGCC	4 cut(s)	8, 35, 44, 158
BshNI	GGYRCC	2 cut(s)	215, 300
BsiHKAI	GWGCWC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	4 cut(s)	8, 35, 44, 158
Bsp1286I	GDGCHC	2 cut(s)	54, 303
Bsp143I	GATC	1 cut(s)	327
Bsp1720I	GCTNAGC	1 cut(s)	23
BspACI	CCGC	2 cut(s)	9, 344
BspANI	GGCC	4 cut(s)	8, 35, 44, 158
BspLI	GGNNCC	2 cut(s)	217, 302
BspPI	GGATC	1 cut(s)	322
BspT107I	GGYRCC	2 cut(s)	215, 300
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	6, 37, 198
BstDEI	CTNAG	1 cut(s)	23
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 197
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	2 cut(s)	200, 350
BstSCI	CCNGG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	162
BsuRI	GGCC	4 cut(s)	8, 35, 44, 158
BtrI	CACGTC	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	6, 37, 198
CaiI	CAGNNNCTG	1 cut(s)	310
CseI	GACGC	1 cut(s)	128
CviAII	CATG	5 cut(s)	197, 230, 236, 296, 347
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	2 cut(s)	33, 42
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	200, 233, 239, 299, 350
FaiI	YATR	8 cut(s)	180, 198, 231, 237, 279, 297, 326, 348
FatI	CATG	5 cut(s)	196, 229, 235, 295, 346
Fnu4HI	GCNGC	2 cut(s)	9, 176
Fsp4HI	GCNGC	2 cut(s)	9, 176
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	9, 176
GsaI	CCCAGC	1 cut(s)	335
HaeIII	GGCC	4 cut(s)	8, 35, 44, 158
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	200, 233, 239, 299, 350
HindIII	AAGCTT	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	4, 164, 178, 200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 197
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	200, 233, 239, 299, 350
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	49, 172
LpnPI	CCDG	9 cut(s)	17, 49, 172, 178, 205, 279, 296, 317, 345
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	5 cut(s)	92, 128, 133, 136, 217
MhlI	GDGCHC	2 cut(s)	54, 303
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	69, 122
MnlI	CCTC	1 cut(s)	148
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	234, 294
Msp20I	TGGCCA	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	41, 197
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	5 cut(s)	200, 233, 239, 299, 350
NlaIV	GGNNCC	2 cut(s)	217, 302
NmeAIII	GCCGAG	1 cut(s)	20
NspI	RCATGY	2 cut(s)	200, 350
PaeI	GCATGC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	10, 177
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	217, 302
PstNI	CAGNNNCTG	1 cut(s)	310
RseI	CAYNNNNRTG	2 cut(s)	234, 294
SatI	GCNGC	2 cut(s)	9, 176
Sau3AI	GATC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	2 cut(s)	54, 303
SetI	ASST	8 cut(s)	24, 41, 57, 106, 177, 187, 217, 337
SfaNI	GCATC	1 cut(s)	316
SfiI	GGCCNNNNNGGCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	234, 294
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	9, 344
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	57
TasI	AATT	1 cut(s)	209
TauI	GCSGC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	310
XceI	RCATGY	2 cut(s)	200, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.