Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011487

Physical Location & Seq

Genomic Coordinates Reverse (-)

4374943 .. 4375762

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G039400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAATCTGCAAAGGAGAAGCTCAGCAATAAGGCCTGCGCTGCCAAAGAGCACGCAAACATTTACAAAGCCAAAGCTGAAGAAAAGGTGGAGAAGGCGACGGCGAGAACAGAAGAACAAAGGGAAATAGCTAGCGAAGTAAGAAAAGCAAAAGAAGCAAAAGCAAAGATGGAGCTTCATGAGGCGAAAGCTGAGCACGCAGCTGAAAAATTGACTGCTAGTGCTAAGAAATCCCATGTCATCCATGGACAGAGTGATCCTGCGGTTGGTGATCGCGCGTCATCTCCATGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009791 GO:0010035 GO:0010154 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0061458 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_1

Protein Analysis

99

Amino Acids

10.71

Weight (kDa)

9.21

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35300
fragaria_vesca	FvH4_5g21820 FvH4_5g21830
malus_domestica	MD06G1032700.v1.1
prunus_persica	Prupe.5G039300_v2.0.a1 Prupe.5G039400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0209341
rosa_laevigata	RLG00000003143
rosa_multiflora	Rmu_sc0001701.1_g000025 Rmu_sc0001701.1_g000026
rosa_roxburghii	Rroxscaffold_3G00249510
rosa_rugosa	Rorug07G0111700 Rorug07G0111800
rosa_samantha	Rh7AG245600 Rh7BG240700 Rh7CG260900 Rh7CG261200 Rh7DG252200 Rh7DG252300
rosa_wichuraiana	Rw7G020800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	276, 278
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	22, 77, 131, 175, 191, 203
AluI	AGCT	6 cut(s)	22, 77, 131, 175, 191, 203
Alw21I	GWGCWC	2 cut(s)	54, 198
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	41, 200
AspLEI	GCGC	2 cut(s)	41, 278
AsuHPI	GGTGA	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	131
Bbv12I	GWGCWC	2 cut(s)	54, 198
BbvI	GCAGC	2 cut(s)	28, 212
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	132, 219
BisI	GCNGC	2 cut(s)	42, 201
BlpI	GCTNAGC	2 cut(s)	23, 192
BlsI	GCNGC	2 cut(s)	43, 202
BmtI	GCTAGC	1 cut(s)	135
Bpu1102I	GCTNAGC	2 cut(s)	23, 192
BsaJI	CCNNGG	2 cut(s)	244, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	244, 287
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	37, 183
BseXI	GCAGC	2 cut(s)	28, 212
Bsh1236I	CGCG	2 cut(s)	276, 278
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	54, 198
BslI	CCNNNNNNNGG	1 cut(s)	266
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	54, 198
Bsp143I	GATC	2 cut(s)	256, 271
Bsp1720I	GCTNAGC	2 cut(s)	23, 192
Bsp19I	CCATGG	2 cut(s)	244, 287
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	36, 184
BspFNI	CGCG	2 cut(s)	276, 278
BspHI	TCATGA	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	244, 287
BssMI	GATC	2 cut(s)	256, 271
BssT1I	CCWWGG	2 cut(s)	244, 287
BstC8I	GCNNGC	4 cut(s)	37, 54, 133, 198
BstDEI	CTNAG	3 cut(s)	23, 192, 225
BstDSI	CCRYGG	2 cut(s)	244, 287
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	2 cut(s)	276, 278
BstHHI	GCGC	2 cut(s)	41, 278
BstKTI	GATC	2 cut(s)	259, 274
BstMBI	GATC	2 cut(s)	256, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 155, 197
BstUI	CGCG	2 cut(s)	276, 278
BstV1I	GCAGC	2 cut(s)	28, 212
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	2 cut(s)	244, 287
BtsCI	GGATG	1 cut(s)	240
Cac8I	GCNNGC	4 cut(s)	37, 54, 133, 198
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	41, 278
CseI	GACGC	1 cut(s)	267
CviAII	CATG	4 cut(s)	179, 236, 245, 288
CviJI	RGCY	8 cut(s)	22, 35, 71, 77, 131, 175, 191, 203
CviKI_1	RGCY	8 cut(s)	22, 35, 71, 77, 131, 175, 191, 203
DdeI	CTNAG	3 cut(s)	23, 192, 225
DpnI	GATC	2 cut(s)	258, 273
DpnII	GATC	2 cut(s)	256, 271
Eco130I	CCWWGG	2 cut(s)	244, 287
Eco147I	AGGCCT	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	99
EcoT14I	CCWWGG	2 cut(s)	244, 287
ErhI	CCWWGG	2 cut(s)	244, 287
FaeI	CATG	4 cut(s)	182, 239, 248, 291
FaiI	YATR	4 cut(s)	180, 237, 246, 289
FatI	CATG	4 cut(s)	178, 235, 244, 287
Fnu4HI	GCNGC	2 cut(s)	42, 201
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	42, 201
FspBI	CTAG	2 cut(s)	132, 219
GlaI	GCGC	2 cut(s)	40, 277
GluI	GCNGC	2 cut(s)	42, 201
HaeIII	GGCC	1 cut(s)	35
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	2 cut(s)	41, 278
Hin1II	CATG	4 cut(s)	182, 239, 248, 291
Hin6I	GCGC	2 cut(s)	39, 276
HinP1I	GCGC	2 cut(s)	39, 276
HphI	GGTGA	1 cut(s)	281
Hpy188III	TCNNGA	2 cut(s)	179, 294
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	4, 11
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 155, 197
HpyF3I	CTNAG	3 cut(s)	23, 192, 225
Hsp92II	CATG	4 cut(s)	182, 239, 248, 291
HspAI	GCGC	2 cut(s)	39, 276
Kzo9I	GATC	2 cut(s)	256, 271
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	2 cut(s)	49, 273
Lsp1109I	GCAGC	2 cut(s)	28, 212
MaeI	CTAG	2 cut(s)	132, 219
MalI	GATC	2 cut(s)	258, 273
MboI	GATC	2 cut(s)	256, 271
MboII	GAAGA	2 cut(s)	92, 125
MhlI	GDGCHC	2 cut(s)	54, 198
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	1 cut(s)	175
MslI	CAYNNNNRTG	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	203
MvnI	CGCG	2 cut(s)	276, 278
MwoI	GCNNNNNNNGC	3 cut(s)	41, 155, 197
NcoI	CCATGG	2 cut(s)	244, 287
NdeII	GATC	2 cut(s)	256, 271
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	4 cut(s)	182, 239, 248, 291
PagI	TCATGA	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	43, 202
PvuII	CAGCTG	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	286
SatI	GCNGC	2 cut(s)	42, 201
Sau3AI	GATC	2 cut(s)	256, 271
SduI	GDGCHC	2 cut(s)	54, 198
SetI	ASST	7 cut(s)	24, 79, 90, 133, 177, 193, 205
SmiMI	CAYNNNNRTG	1 cut(s)	286
Sse9I	AATT	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	132, 219
StuI	AGGCCT	1 cut(s)	35
StyI	CCWWGG	2 cut(s)	244, 287
TasI	AATT	1 cut(s)	209
TseI	GCWGC	2 cut(s)	41, 200
TspDTI	ATGAA	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XspI	CTAG	2 cut(s)	132, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.