Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011487

Physical Location & Seq

Genomic Coordinates Reverse (-)

4371126 .. 4371525

Gene Structure 400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G039300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCCAGTTCAGCCAAGGAGCACGTAAATATTTACAAAGCCGAAGTAGAAGAAAAGGACGAAGGAGGAGAAAAAGATGGCCAAAGTGCGGAGAAGGAAGCTAGGGCAAAGATGGAGCTGCATAAAGCCAAAGCTAGGCATGCGGAGAAGAAATTGAGCTCCAGGCAACCCCATGTTCATGGCGTCGGCGGCGGCCGCCACCACCACCAACTGCTTTCTGCCGGCACTCGCCATATGCATGGCCACCAGCATCTGGGAACTGCTGGGTATCCCATGGCTGGGACGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009791 GO:0010035 GO:0010154 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0061458 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_1

Protein Analysis

97

Amino Acids

10.5

Weight (kDa)

9.3

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35300
fragaria_vesca	FvH4_5g21820 FvH4_5g21830
malus_domestica	MD06G1032700.v1.1
prunus_persica	Prupe.5G039300_v2.0.a1 Prupe.5G039400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0209341
rosa_laevigata	RLG00000003143
rosa_multiflora	Rmu_sc0001701.1_g000025 Rmu_sc0001701.1_g000026
rosa_roxburghii	Rroxscaffold_3G00249510
rosa_rugosa	Rorug07G0111700 Rorug07G0111800
rosa_samantha	Rh7AG245600 Rh7BG240700 Rh7CG260900 Rh7CG261200 Rh7DG252200 Rh7DG252300
rosa_wichuraiana	Rw7G020800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	5 cut(s)	89, 143, 189, 192, 196
AcoI	YGGCCR	4 cut(s)	3, 79, 193, 241
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	5 cut(s)	88, 135, 253, 278, 279
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	101, 118, 134, 159
AluI	AGCT	4 cut(s)	101, 118, 134, 159
Alw21I	GWGCWC	2 cut(s)	24, 161
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	4 cut(s)	3, 79, 193, 241
ApeKI	GCWGC	1 cut(s)	118
BalI	TGGCCA	3 cut(s)	5, 81, 243
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	2 cut(s)	24, 161
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	2 cut(s)	71, 106
BciT130I	CCWGG	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	279
BfaI	CTAG	2 cut(s)	102, 135
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	4 cut(s)	119, 190, 193, 196
BlsI	GCNGC	4 cut(s)	120, 191, 194, 197
Bme1390I	CCNGG	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	15, 273
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 135, 253, 278, 279
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	15, 273
BseLI	CCNNNNNNNGG	5 cut(s)	88, 135, 253, 278, 279
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	105
BseYI	CCCAGC	2 cut(s)	263, 278
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	4 cut(s)	5, 81, 195, 243
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	24, 161
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	5 cut(s)	88, 135, 253, 278, 279
BsnI	GGCC	4 cut(s)	5, 81, 195, 243
Bsp1286I	GDGCHC	2 cut(s)	24, 161
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	5 cut(s)	89, 143, 189, 192, 196
BspANI	GGCC	4 cut(s)	5, 81, 195, 243
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	15, 273
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	15, 273
Bst2UI	CCWGG	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	141, 223
BstDSI	CCRYGG	1 cut(s)	273
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 140, 189, 195
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	105
BstXI	CCANNNNNNTGG	2 cut(s)	179, 239
BstZI	CGGCCG	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	5, 81, 195, 243
BtgI	CCRYGG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	141, 223
CaiI	CAGNNNCTG	1 cut(s)	253
CciNI	GCGGCCGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	221
CseI	GACGC	1 cut(s)	172
CviAII	CATG	5 cut(s)	140, 173, 179, 239, 274
EaeI	YGGCCR	4 cut(s)	3, 79, 193, 241
EagI	CGGCCG	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	15, 273
Eco24I	GRGCYC	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	15, 273
EcoT22I	ATGCAT	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	2 cut(s)	15, 273
FaeI	CATG	5 cut(s)	143, 176, 182, 242, 277
FaiI	YATR	8 cut(s)	123, 141, 174, 180, 234, 236, 240, 275
FatI	CATG	5 cut(s)	139, 172, 178, 238, 273
FauNDI	CATATG	1 cut(s)	234
Fnu4HI	GCNGC	4 cut(s)	119, 190, 193, 196
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	4 cut(s)	119, 190, 193, 196
FspBI	CTAG	2 cut(s)	102, 135
GluI	GCNGC	4 cut(s)	119, 190, 193, 196
GsaI	CCCAGC	2 cut(s)	267, 282
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	5, 81, 195, 243
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	143, 176, 182, 242, 277
HpaII	CCGG	1 cut(s)	222
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	56, 88
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	121, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 140, 189, 195
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	143, 176, 182, 242, 277
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
LmnI	GCTCC	3 cut(s)	19, 115, 164
LpnPI	CCDG	8 cut(s)	19, 148, 175, 235, 239, 249, 260, 264
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	102, 135
MaeII	ACGT	1 cut(s)	24
MboII	GAAGA	2 cut(s)	62, 160
MhlI	GDGCHC	2 cut(s)	24, 161
MlsI	TGGCCA	3 cut(s)	5, 81, 243
MluCI	AATT	1 cut(s)	152
MluNI	TGGCCA	3 cut(s)	5, 81, 243
MnlI	CCTC	1 cut(s)	59
Mox20I	TGGCCA	3 cut(s)	5, 81, 243
Mph1103I	ATGCAT	1 cut(s)	240
MroNI	GCCGGC	1 cut(s)	221
MscI	TGGCCA	3 cut(s)	5, 81, 243
MslI	CAYNNNNRTG	2 cut(s)	177, 237
Msp20I	TGGCCA	3 cut(s)	5, 81, 243
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	4 cut(s)	11, 140, 189, 195
NaeI	GCCGGC	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	1 cut(s)	234
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	5 cut(s)	143, 176, 182, 242, 277
NotI	GCGGCCGC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	143
PaeI	GCATGC	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	120, 191, 194, 197
Ppu21I	YACGTR	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	2 cut(s)	263, 278
PspGI	CCWGG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	253
RseI	CAYNNNNRTG	2 cut(s)	177, 237
SacI	GAGCTC	1 cut(s)	161
SatI	GCNGC	4 cut(s)	119, 190, 193, 196
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	24, 161
SetI	ASST	5 cut(s)	27, 103, 120, 136, 161
SfaNI	GCATC	1 cut(s)	259
SmiMI	CAYNNNNRTG	2 cut(s)	177, 237
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	5 cut(s)	89, 143, 189, 192, 196
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	2 cut(s)	102, 135
SstI	GAGCTC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	2 cut(s)	15, 273
TaiI	ACGT	1 cut(s)	27
TasI	AATT	1 cut(s)	152
TauI	GCSGC	3 cut(s)	192, 195, 198
TseI	GCWGC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	253
XceI	RCATGY	1 cut(s)	143
XspI	CTAG	2 cut(s)	102, 135
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.