Rh7CG261200

Late embryogenesis abundant (LEA) group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011487
Physical Location & Seq
Forward (+)
25492181 .. 25493138
958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG261200.1

Sequence Viewer

Length: 258 bp
ATGCAGGCCGCAAAGGAAAAGCTTAGCAATCTGGCCAGCTCGGCCAAGGAGCACGTCAATATCTACAAAGCCAAAATAGAAGAAAAGTTGGAGAGAGCAAAAGCTAGGAATAAGGAAGAGAAGAAGATGGCGAGAGAGCGTCGGAAAGTGAAGGAGGCCAGTGCAAAGATGGAGCTGCATAAAGCTAAAGCCAGGCATGCAGAGAAGAAATTAGTCGAGAACATAGATATTAGACACTACAGTGGAGTTGAAAAATGA

Protein Analysis

85

Amino Acids

9.9

Weight (kDa)

9.99

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_1 PF03760 1 - 70 5.5e-23 Late embryogenesis abundant (LEA) group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AcoI YGGCCR 2 cut(s) 33, 42
AgsI TTSAA 1 cut(s) 251
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 191
AleI CACNNNNGTG 1 cut(s) 240
AluBI AGCT 5 cut(s) 22, 39, 104, 175, 185
AluI AGCT 5 cut(s) 22, 39, 104, 175, 185
Alw21I GWGCWC 1 cut(s) 54
AoxI GGCC 4 cut(s) 6, 33, 42, 156
ApeKI GCWGC 1 cut(s) 175
BalI TGGCCA 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 121, 163
BciT130I CCWGG 1 cut(s) 193
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 238
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 2 cut(s) 9, 176
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 2 cut(s) 10, 177
Bme1390I CCNGG 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 193
Bpu1102I GCTNAGC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 162
BshFI GGCC 4 cut(s) 8, 35, 44, 158
BsiHKAI GWGCWC 1 cut(s) 54
BsnI GGCC 4 cut(s) 8, 35, 44, 158
Bsp1286I GDGCHC 1 cut(s) 54
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 1 cut(s) 9
BspANI GGCC 4 cut(s) 8, 35, 44, 158
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 6, 37, 198
BstDEI CTNAG 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 41, 197
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 162
BsuRI GGCC 4 cut(s) 8, 35, 44, 158
BtrI CACGTC 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 166, 247
Cac8I GCNNGC 3 cut(s) 6, 37, 198
CseI GACGC 1 cut(s) 128
CviAII CATG 1 cut(s) 197
DdeI CTNAG 1 cut(s) 23
EaeI YGGCCR 2 cut(s) 33, 42
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 180, 198, 224
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 9, 176
Fsp4HI GCNGC 2 cut(s) 9, 176
FspBI CTAG 1 cut(s) 105
GluI GCNGC 2 cut(s) 9, 176
HaeIII GGCC 4 cut(s) 8, 35, 44, 158
HgaI GACGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 4, 164, 178, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 197
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 1 cut(s) 200
LmnI GCTCC 2 cut(s) 49, 172
LpnPI CCDG 5 cut(s) 17, 49, 172, 178, 205
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 54
MboII GAAGA 5 cut(s) 92, 128, 133, 136, 217
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 69, 122
MnlI CCTC 1 cut(s) 148
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 41, 197
NlaIII CATG 1 cut(s) 200
NmeAIII GCCGAG 1 cut(s) 20
NspI RCATGY 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 240
PaeI GCATGC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 10, 177
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 240
SatI GCNGC 2 cut(s) 9, 176
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 54
SetI ASST 6 cut(s) 24, 41, 57, 106, 177, 187
SfcI CTRYAG 1 cut(s) 238
SfiI GGCCNNNNNGGCC 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 240
SphI GCATGC 1 cut(s) 200
Sse9I AATT 1 cut(s) 209
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 209
TauI GCSGC 1 cut(s) 11
TscAI CASTG 2 cut(s) 166, 247
TseI GCWGC 1 cut(s) 175
TspRI CASTG 2 cut(s) 166, 247
XceI RCATGY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.