Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011487

Physical Location & Seq

Genomic Coordinates Forward (+)

25480835 .. 25481185

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG260900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCAGACTGTGAAGGAGAAGCTGAGCAATATGGTCAATTCTGTCAAGGAGCATGCAATAGTATACAAAGCTAAAGCTGAAGAAAAGGCGGAGTTGGTGACTGCGAAGACGGAGGCAGAGAAACAACTAGTGAAAGAGAAGAGAAAGGCTAAAGAGGCAAAAGCGAAGATGGAGCTGCACAAGGCCAAAGCCGAGCATGCTGCTGAAAAAATGTCCAATTCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009791 GO:0010035 GO:0010154 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0061458 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_1

Protein Analysis

75

Amino Acids

8.46

Weight (kDa)

9.66

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_1	PF03760	1 - 70	3.6e-20	Late embryogenesis abundant (LEA) group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35300
fragaria_vesca	FvH4_5g21820 FvH4_5g21830
malus_domestica	MD06G1032700.v1.1
prunus_persica	Prupe.5G039300_v2.0.a1 Prupe.5G039400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0209341
rosa_laevigata	RLG00000003143
rosa_multiflora	Rmu_sc0001701.1_g000025 Rmu_sc0001701.1_g000026
rosa_roxburghii	Rroxscaffold_3G00249510
rosa_rugosa	Rorug07G0111700 Rorug07G0111800
rosa_samantha	Rh7AG245600 Rh7BG240700 Rh7CG260900 Rh7CG261200 Rh7DG252200 Rh7DG252300
rosa_wichuraiana	Rw7G020800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	99
AhlI	ACTAGT	1 cut(s)	127
AluBI	AGCT	4 cut(s)	22, 71, 77, 175
AluI	AGCT	4 cut(s)	22, 71, 77, 175
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	175, 200
AsuHPI	GGTGA	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	162, 187
BccI	CCATC	1 cut(s)	163
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcuI	ACTAGT	1 cut(s)	127
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	176, 201
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	2 cut(s)	177, 202
BpiI	GAAGAC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	162, 187
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	185
Bsp1720I	GCTNAGC	1 cut(s)	23
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	15
BssNAI	GTATAC	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	54, 198
BstDEI	CTNAG	2 cut(s)	23, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 197
BstNSI	RCATGY	2 cut(s)	56, 200
BstV1I	GCAGC	2 cut(s)	162, 187
BstV2I	GAAGAC	1 cut(s)	113
BstZ17I	GTATAC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	185
Cac8I	GCNNGC	2 cut(s)	54, 198
CviAII	CATG	2 cut(s)	53, 197
CviJI	RGCY	7 cut(s)	22, 71, 77, 149, 175, 185, 191
CviKI_1	RGCY	7 cut(s)	22, 71, 77, 149, 175, 185, 191
DdeI	CTNAG	2 cut(s)	23, 222
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	99
FaeI	CATG	2 cut(s)	56, 200
FaiI	YATR	4 cut(s)	32, 54, 64, 198
FatI	CATG	2 cut(s)	52, 196
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	176, 201
Fsp4HI	GCNGC	2 cut(s)	176, 201
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	176, 201
HaeIII	GGCC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	56, 200
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	4, 56, 178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 197
HpyF3I	CTNAG	2 cut(s)	23, 222
Hsp92II	CATG	2 cut(s)	56, 200
LmnI	GCTCC	2 cut(s)	49, 172
Lsp1109I	GCAGC	2 cut(s)	162, 187
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	92, 118, 151, 178
MluCI	AATT	2 cut(s)	37, 217
MnlI	CCTC	2 cut(s)	106, 148
MwoI	GCNNNNNNNGC	2 cut(s)	155, 197
NlaIII	CATG	2 cut(s)	56, 200
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	2 cut(s)	56, 200
PaeI	GCATGC	2 cut(s)	56, 200
PkrI	GCNGC	2 cut(s)	177, 202
SatI	GCNGC	2 cut(s)	176, 201
SetI	ASST	4 cut(s)	24, 73, 79, 177
SgeI	CNNG	6 cut(s)	58, 65, 140, 193, 205, 209
SpeI	ACTAGT	1 cut(s)	127
SphI	GCATGC	2 cut(s)	56, 200
Sse9I	AATT	2 cut(s)	37, 217
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	2 cut(s)	37, 217
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	175, 200
Tsp45I	GTSAC	1 cut(s)	97
TspGWI	ACGGA	1 cut(s)	125
XceI	RCATGY	2 cut(s)	56, 200
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.