Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009804

Physical Location & Seq

Genomic Coordinates Reverse (-)

13671916 .. 13672531

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTTGGATACAAGTCCCCAGAGTACGTCGCAACCAAGCGGATCACAAAGAAGACCGATGTATGGAGCCTCGATGTGCTCATCTTGGAGATCCTAACAGGGAAGTTTCCAACCAGCTTTCTGCAACATGGTAAGGGAAGTGAGGAGGACCTAGCGAGCTGGGTGAACTCGGTGCCTAAAGACGAGTGGTTCACACAGGTGTTCGATAGGGAAATGAATGCAAGCAAGAACTGCGAGGGGGAGATGTTGAAGCTCTTGAAGCTTGGGTTGGAATGTTGCGAAGGTGATGTAGAGAAGAGGTGGGATTTGAAAGAGGTTGTTGGGAGGATTGAAGAGTTGAAAGAAGTTGGTAACAGTGGTGGTGGTGGCGGTAGCGGCGGCTGTCCGGATGTGGATTTTCTCTCTTCTTCCACTAGTGAAGTTGACATCACGAAGTTGGCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

149

Amino Acids

16.29

Weight (kDa)

4.75

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 107	7.1e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 108	6.4e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07040 AT5G35390
fragaria_vesca	FvH4_4g06060 FvH4_5g22250
malus_domestica	MD13G1232600.v1.1 MD16G1238200.v1.1
prunus_persica	Prupe.1G064100_v2.0.a1
pyrus_communis	pycom13g20500 pycom13g20530
rosa_chinensis	RchiOBHm_Chr4g0397621
rosa_laevigata	RLG00000009423
rosa_multiflora	Rmu_co8327933.1_g000001 Rmu_sc0002729.1_g000002 Rmu_sc0005653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342430
rosa_rugosa	Rorug03G0342300
rosa_samantha	Rh4AG079400 Rh4BG077300 Rh4CG085000 Rh4DG072400
rosa_wichuraiana	Rw4G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	5 cut(s)	40, 369, 375, 378, 440
AclWI	GGATC	2 cut(s)	50, 85
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	5 cut(s)	250, 259, 310, 332, 340
AhlI	ACTAGT	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	4 cut(s)	117, 159, 253, 262
AluI	AGCT	4 cut(s)	117, 159, 253, 262
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	50, 85
Aor13HI	TCCGGA	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	175, 296
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	81
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	2 cut(s)	152, 414
BisI	GCNGC	2 cut(s)	376, 379
BlsI	GCNGC	2 cut(s)	377, 380
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	68, 174
BpiI	GAAGAC	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	385
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp13I	TCCGGA	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	42, 90
BspACI	CCGC	5 cut(s)	40, 369, 375, 378, 440
BspEI	TCCGGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	68, 174
BspPI	GGATC	2 cut(s)	50, 85
BspT107I	GGYRCC	1 cut(s)	172
BssMI	GATC	2 cut(s)	42, 90
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	3 cut(s)	290, 327, 409
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	157, 223
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	45, 93
BstMBI	GATC	2 cut(s)	42, 90
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 259, 375
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	157, 223
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	6 cut(s)	69, 117, 159, 253, 262, 381
CviKI_1	RGCY	6 cut(s)	69, 117, 159, 253, 262, 381
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	2 cut(s)	44, 92
DpnII	GATC	2 cut(s)	42, 90
Eam1104I	CTCTTC	3 cut(s)	290, 327, 409
EarI	CTCTTC	3 cut(s)	290, 327, 409
Eco47I	GGWCC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	148
FaeI	CATG	1 cut(s)	131
FaiI	YATR	2 cut(s)	64, 129
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	376, 379
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	2 cut(s)	376, 379
FspBI	CTAG	2 cut(s)	152, 414
GluI	GCNGC	2 cut(s)	376, 379
GsaI	CCCAGC	1 cut(s)	163
HapII	CCGG	1 cut(s)	386
Hin1II	CATG	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	260
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	2 cut(s)	175, 296
Hpy166II	GTNNAC	3 cut(s)	166, 192, 424
Hpy188III	TCNNGA	3 cut(s)	256, 386, 430
Hpy8I	GTNNAC	3 cut(s)	166, 192, 424
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	124, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 259, 375
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	42, 90
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	6 cut(s)	33, 84, 127, 145, 182, 399
MaeI	CTAG	2 cut(s)	152, 414
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	2 cut(s)	44, 92
MboI	GATC	2 cut(s)	42, 90
MboII	GAAGA	5 cut(s)	64, 307, 344, 396, 399
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	81
MmeI	TCCRAC	2 cut(s)	134, 249
MnlI	CCTC	7 cut(s)	80, 136, 139, 229, 291, 307, 318
MroI	TCCGGA	1 cut(s)	385
MslI	CAYNNNNRTG	1 cut(s)	197
MspI	CCGG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	3 cut(s)	231, 259, 375
NdeII	GATC	2 cut(s)	42, 90
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	68, 174
OliI	CACNNNNGTG	1 cut(s)	197
PctI	GAATGC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	377, 380
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	68, 174
PspPI	GGNCC	1 cut(s)	148
PspPPI	RGGWCCY	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	197
SatI	GCNGC	2 cut(s)	376, 379
Sau3AI	GATC	2 cut(s)	42, 90
Sau96I	GGNCC	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	413
SsiI	CCGC	5 cut(s)	40, 369, 375, 378, 440
SspMI	CTAG	2 cut(s)	152, 414
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	72, 204
TaqII	GACCGA	1 cut(s)	71
TauI	GCSGC	2 cut(s)	378, 381
TscAI	CASTG	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	148
XspI	CTAG	2 cut(s)	152, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.