Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002729.1

Orthogroup ID

OG0009804

Physical Location & Seq

Genomic Coordinates Forward (+)

5121 .. 5867

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002729.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgtcccgctgcagcatgcgcatgcggcgcagcgtgcattggacattgtttcctcaatgttctttgattcttctccttctgtttcatattaacgttgcctcctcagctgcacccccaccagaccccacagacaccctcctcaagttcaaggactcactcaagattagtggtaatgcgctgagtaattgggtgaagaccacgcctccgtgcgatggcaaaaaggcgaattgggatggcgttctttgtggcgaggggaagatttggggcttgcagcttgaaaagatggggttaagcggccacattaatgtcacagcactcacgcagcttccagacttaagaaccataagcatgatgcaaaataattttgagggttcgttgccggactggaggaaacttagtacgttgaaaacgttgtatatgtctgaaaataaattctcgggggacattccctccgactttttccagggaatgaagcaattgaagaagcttcatttggcgaataaccagtttacgggtcagattcccaagtcgttgacaaccttggataagctggtggagctgacccttcaagggaacaaattttcaggcaaaataccagattttccacaagttcgatggactgtctttaatgcgtccaaaaacgacttggagggtgagatcccagacggcttgagaaagttgagtacagactgctttgctggtgagtcatgcgttctctctctctctctaacatctgttagtacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.55

Weight (kDa)

9.01

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07040 AT5G35390
fragaria_vesca	FvH4_4g06060 FvH4_5g22250
malus_domestica	MD13G1232600.v1.1 MD16G1238200.v1.1
prunus_persica	Prupe.1G064100_v2.0.a1
pyrus_communis	pycom13g20500 pycom13g20530
rosa_chinensis	RchiOBHm_Chr4g0397621
rosa_laevigata	RLG00000009423
rosa_multiflora	Rmu_co8327933.1_g000001 Rmu_sc0002729.1_g000002 Rmu_sc0005653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342430
rosa_rugosa	Rorug03G0342300
rosa_samantha	Rh4AG079400 Rh4BG077300 Rh4CG085000 Rh4DG072400
rosa_wichuraiana	Rw4G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
AciI	CCGC	3 cut(s)	7, 25, 294
AclI	AACGTT	2 cut(s)	93, 410
AclWI	GGATC	1 cut(s)	652
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	431, 578
AfaI	GTAC	3 cut(s)	400, 685, 742
AfiI	CCNNNNNNNGG	3 cut(s)	212, 511, 570
AflII	CTTAAG	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	148, 278, 406, 481, 569
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	6 cut(s)	107, 274, 325, 487, 550, 559
AluI	AGCT	6 cut(s)	107, 274, 325, 487, 550, 559
AlwI	GGATC	1 cut(s)	652
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	6 cut(s)	9, 12, 30, 107, 271, 322
ApoI	RAATTY	2 cut(s)	431, 578
AseI	ATTAAT	1 cut(s)	303
AspLEI	GCGC	3 cut(s)	21, 30, 178
AsuHPI	GGTGA	3 cut(s)	202, 665, 713
AvaI	CYCGRG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	5 cut(s)	24, 42, 94, 283, 334
BccI	CCATC	4 cut(s)	206, 227, 277, 609
BceAI	ACGGC	1 cut(s)	682
BciT130I	CCWGG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	10
BfrI	CTTAAG	1 cut(s)	334
BisI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
BlsI	GCNGC	8 cut(s)	11, 14, 27, 32, 109, 273, 296, 324
BmcAI	AGTACT	1 cut(s)	742
Bme1390I	CCNGG	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	103
BpuEI	CTTGAG	3 cut(s)	125, 143, 691
BsaJI	CCNNGG	2 cut(s)	463, 540
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 187, 217, 434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 511, 570
Bse1I	ACTGG	2 cut(s)	389, 505
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	463, 540
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	3 cut(s)	212, 511, 570
BseMII	CTCAG	2 cut(s)	117, 170
BseNI	ACTGG	2 cut(s)	389, 505
BseRI	GAGGAG	2 cut(s)	91, 128
BseXI	GCAGC	5 cut(s)	24, 42, 94, 283, 334
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	3 cut(s)	212, 511, 570
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	657
BspACI	CCGC	3 cut(s)	7, 25, 294
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	116, 171
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	652
BspTI	CTTAAG	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	389, 505
BssECI	CCNNGG	2 cut(s)	463, 540
BssMI	GATC	1 cut(s)	657
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	622
BstAFI	CTTAAG	1 cut(s)	334
BstC8I	GCNNGC	4 cut(s)	17, 23, 35, 269
BstDEI	CTNAG	3 cut(s)	103, 179, 395
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	3 cut(s)	21, 30, 178
BstKTI	GATC	1 cut(s)	660
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 25, 27, 34, 104, 556
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	2 cut(s)	19, 25
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	5 cut(s)	24, 42, 94, 283, 334
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
BsuRI	GGCC	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	4 cut(s)	17, 23, 35, 269
CfoI	GCGC	3 cut(s)	21, 30, 178
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	3 cut(s)	399, 684, 741
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	4 cut(s)	16, 22, 349, 708
CviJI	RGCY	9 cut(s)	107, 267, 274, 297, 325, 487, 550, 559, 669
CviKI_1	RGCY	9 cut(s)	107, 267, 274, 297, 325, 487, 550, 559, 669
CviQI	GTAC	3 cut(s)	399, 684, 741
DdeI	CTNAG	3 cut(s)	103, 179, 395
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	4 cut(s)	19, 25, 352, 711
FaiI	YATR	8 cut(s)	17, 23, 87, 344, 350, 417, 419, 709
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	4 cut(s)	15, 21, 348, 707
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
FspAI	RTGCGCAY	1 cut(s)	20
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	3 cut(s)	20, 29, 177
GluI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	1 cut(s)	621
HhaI	GCGC	3 cut(s)	21, 30, 178
Hin1II	CATG	4 cut(s)	19, 25, 352, 711
Hin6I	GCGC	3 cut(s)	19, 28, 176
HinP1I	GCGC	3 cut(s)	19, 28, 176
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	4 cut(s)	67, 152, 520, 704
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	202, 665, 713
Hpy166II	GTNNAC	2 cut(s)	510, 534
Hpy188I	TCNGA	3 cut(s)	424, 454, 519
Hpy188III	TCNNGA	2 cut(s)	160, 329
Hpy8I	GTNNAC	2 cut(s)	510, 534
HpyAV	CCTTC	2 cut(s)	86, 575
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4IV	ACGT	3 cut(s)	93, 401, 410
HpyCH4V	TGCA	5 cut(s)	12, 37, 110, 271, 355
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 25, 27, 34, 104, 556
HpyF3I	CTNAG	3 cut(s)	103, 179, 395
HpySE526I	ACGT	3 cut(s)	93, 401, 410
Hsp92II	CATG	4 cut(s)	19, 25, 352, 711
HspAI	GCGC	3 cut(s)	19, 28, 176
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	5 cut(s)	24, 42, 94, 283, 334
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	3 cut(s)	93, 401, 410
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	4 cut(s)	62, 205, 268, 493
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	1 cut(s)	657
MluCI	AATT	6 cut(s)	184, 226, 361, 431, 476, 578
MlyI	GAGTC	2 cut(s)	146, 713
MmeI	TCCRAC	1 cut(s)	477
MseI	TTAA	6 cut(s)	90, 290, 303, 335, 627, 745
MslI	CAYNNNNRTG	3 cut(s)	20, 303, 347
MspA1I	CMGCKG	2 cut(s)	9, 107
MspCI	CTTAAG	1 cut(s)	334
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	464
MunI	CAATTG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	6 cut(s)	18, 25, 27, 34, 104, 556
NdeII	GATC	1 cut(s)	657
NlaIII	CATG	4 cut(s)	19, 25, 352, 711
NmuCI	GTSAC	1 cut(s)	307
NsbI	TGCGCA	1 cut(s)	20
NspI	RCATGY	2 cut(s)	19, 25
PaeI	GCATGC	2 cut(s)	19, 25
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	67, 520
PkrI	GCNGC	8 cut(s)	11, 14, 27, 32, 109, 273, 296, 324
PleI	GAGTC	2 cut(s)	146, 712
PpsI	GAGTC	2 cut(s)	146, 712
PshBI	ATTAAT	1 cut(s)	303
Psp1406I	AACGTT	2 cut(s)	93, 410
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	657
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	3 cut(s)	400, 685, 742
RsaNI	GTAC	3 cut(s)	399, 684, 741
RseI	CAYNNNNRTG	3 cut(s)	20, 303, 347
SaqAI	TTAA	6 cut(s)	90, 290, 303, 335, 627, 745
SatI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
Sau3AI	GATC	1 cut(s)	657
ScaI	AGTACT	1 cut(s)	742
SchI	GAGTC	2 cut(s)	146, 713
ScrFI	CCNGG	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	10
SmiMI	CAYNNNNRTG	3 cut(s)	20, 303, 347
SmlI	CTYRAG	4 cut(s)	140, 158, 334, 670
SmoI	CTYRAG	4 cut(s)	140, 158, 334, 670
SphI	GCATGC	2 cut(s)	19, 25
Sse9I	AATT	6 cut(s)	184, 226, 361, 431, 476, 578
SsiI	CCGC	3 cut(s)	7, 25, 294
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	622
TaiI	ACGT	3 cut(s)	96, 404, 413
TaqI	TCGA	1 cut(s)	613
TasI	AATT	6 cut(s)	184, 226, 361, 431, 476, 578
TatI	WGTACW	2 cut(s)	683, 740
TauI	GCSGC	2 cut(s)	28, 297
TfiI	GAWTC	2 cut(s)	67, 520
Tru1I	TTAA	6 cut(s)	90, 290, 303, 335, 627, 745
Tru9I	TTAA	6 cut(s)	90, 290, 303, 335, 627, 745
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	6 cut(s)	9, 12, 30, 107, 271, 322
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	74, 479, 485
TspGWI	ACGGA	1 cut(s)	195
Vha464I	CTTAAG	1 cut(s)	334
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	2 cut(s)	431, 578
XceI	RCATGY	2 cut(s)	19, 25
XcmI	CCANNNNNNNNNTGG	2 cut(s)	612, 643
ZrmI	AGTACT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.