Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009804

Physical Location & Seq

Genomic Coordinates Forward (+)

16661499 .. 16662294

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g20530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAATGCGTGGTATAAAGAAGCATCAGGGAATGAAGAACTATGTGGAGGGCCATTAAAAGCATGCAGTACCCCCTCGAAGAAGCCCGCAACCTGGATAATCGTGCTGATTGTGATCGCTGTCATAGTAGCAATCATCGCCATAGTTGCTTTACTGGTCTTCCTCCTTGGACGCCGCAAAAAATCATCTGAATCATCGGTAGAGGCTCCACCACCATCAACAGCAACTGTCCAAAACAGATCAGTTCAAAAAGAACCAGAGCACCAAGCAAGTGCTCCAGGCTCACCTGAAAACTCGATTAAAGGAGGGAATGGAAAGAAGGGTGAACAGAGCTTAAAGCTTTCATTTGTGAGAGACGACAGGGAGAGGTTTGATATGCAAGACTTGCTGAGAGCCTCGGCGGAGGTGTTAGGCAGCGGTTGCTTTGGGTCATCTTACAAGGCTGCTTTGTTGACCGGACCAGTGATGGTTGTGAAGAGGTATAAGCAGATGAATAATGTAGGAAGAGAGGAGTTCATAGAGCACATGAGAAGGATTGGGAGATTGGGACATCCTAATTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

189

Amino Acids

20.47

Weight (kDa)

9.57

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07040 AT5G35390
fragaria_vesca	FvH4_4g06060 FvH4_5g22250
malus_domestica	MD13G1232600.v1.1 MD16G1238200.v1.1
prunus_persica	Prupe.1G064100_v2.0.a1
pyrus_communis	pycom13g20500 pycom13g20530
rosa_chinensis	RchiOBHm_Chr4g0397621
rosa_laevigata	RLG00000009423
rosa_multiflora	Rmu_co8327933.1_g000001 Rmu_sc0002729.1_g000002 Rmu_sc0005653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342430
rosa_rugosa	Rorug03G0342300
rosa_samantha	Rh4AG079400 Rh4BG077300 Rh4CG085000 Rh4DG072400
rosa_wichuraiana	Rw4G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	87, 175, 401, 417
AcyI	GRCGYC	1 cut(s)	172
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	92, 277
AluBI	AGCT	2 cut(s)	333, 340
AluI	AGCT	2 cut(s)	333, 340
Alw21I	GWGCWC	3 cut(s)	264, 277, 525
Alw26I	GTCTC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	414, 443
AspS9I	GGNCC	2 cut(s)	50, 458
AsuHPI	GGTGA	2 cut(s)	276, 335
AvaII	GGWCC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	3 cut(s)	264, 277, 525
BbvI	GCAGC	2 cut(s)	426, 430
BccI	CCATC	2 cut(s)	223, 460
BciT130I	CCWGG	2 cut(s)	94, 279
BcoDI	GTCTC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	175, 415, 444
BlsI	GCNGC	3 cut(s)	176, 416, 445
Bme1390I	CCNGG	2 cut(s)	94, 279
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	50, 458
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	94, 279
BmsI	GCATC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	166, 396
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	159, 461
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	94, 279
BseDI	CCNNGG	2 cut(s)	166, 396
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	159, 461
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	426, 430
BshFI	GGCC	1 cut(s)	52
BsiHKAI	GWGCWC	3 cut(s)	264, 277, 525
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	348
BsmBI	CGTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	3 cut(s)	264, 277, 525
Bsp143I	GATC	2 cut(s)	114, 239
BspACI	CCGC	4 cut(s)	87, 175, 401, 417
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	159, 461
BssECI	CCNNGG	2 cut(s)	166, 396
BssMI	GATC	2 cut(s)	114, 239
BssNI	GRCGYC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	94, 279
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	470, 499
BstACI	GRCGYC	1 cut(s)	172
BstAPI	GCANNNNNTGC	2 cut(s)	385, 420
BstC8I	GCNNGC	2 cut(s)	64, 87
BstDEI	CTNAG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	2 cut(s)	117, 242
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	2 cut(s)	114, 239
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 146, 385, 420
BstNI	CCWGG	2 cut(s)	94, 279
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	92, 277
BstV1I	GCAGC	2 cut(s)	426, 430
BstV2I	GAAGAC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	52
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	64, 87
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	50, 458
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	2 cut(s)	63, 526
CviJI	RGCY	8 cut(s)	52, 85, 206, 282, 333, 340, 395, 443
CviKI_1	RGCY	8 cut(s)	52, 85, 206, 282, 333, 340, 395, 443
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	2 cut(s)	116, 241
DpnII	GATC	2 cut(s)	114, 239
Eam1104I	CTCTTC	2 cut(s)	470, 499
EarI	CTCTTC	2 cut(s)	470, 499
EciI	GGCGGA	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	92, 277
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	2 cut(s)	66, 529
FaiI	YATR	9 cut(s)	15, 43, 64, 125, 143, 377, 483, 518, 527
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	2 cut(s)	62, 525
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	175, 415, 444
FokI	GGATG	1 cut(s)	537
Fsp4HI	GCNGC	3 cut(s)	175, 415, 444
GluI	GCNGC	3 cut(s)	175, 415, 444
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	66, 529
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	276, 335
Hpy166II	GTNNAC	2 cut(s)	326, 453
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	564
Hpy8I	GTNNAC	2 cut(s)	326, 453
HpyAV	CCTTC	2 cut(s)	313, 525
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	66, 379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 146, 385, 420
HpyF3I	CTNAG	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	66, 529
Kzo9I	GATC	2 cut(s)	114, 239
LmnI	GCTCC	2 cut(s)	211, 280
Lsp1109I	GCAGC	2 cut(s)	426, 430
LweI	GCATC	1 cut(s)	32
MalI	GATC	2 cut(s)	116, 241
MboI	GATC	2 cut(s)	114, 239
MboII	GAAGA	5 cut(s)	47, 91, 151, 487, 516
MhlI	GDGCHC	3 cut(s)	264, 277, 525
MluCI	AATT	1 cut(s)	556
MseI	TTAA	3 cut(s)	56, 300, 335
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	94, 279
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	94, 279
MwoI	GCNNNNNNNGC	4 cut(s)	137, 146, 385, 420
NdeII	GATC	2 cut(s)	114, 239
NlaIII	CATG	2 cut(s)	66, 529
NlaIV	GGNNCC	1 cut(s)	207
NmeAIII	GCCGAG	1 cut(s)	377
NspI	RCATGY	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	66
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	176, 416, 445
Psp6I	CCWGG	2 cut(s)	92, 277
PspGI	CCWGG	2 cut(s)	92, 277
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	50, 458
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	56, 300, 335
SatI	GCNGC	3 cut(s)	175, 415, 444
Sau3AI	GATC	2 cut(s)	114, 239
Sau96I	GGNCC	2 cut(s)	50, 458
ScrFI	CCNGG	2 cut(s)	94, 279
SduI	GDGCHC	3 cut(s)	264, 277, 525
SetI	ASST	7 cut(s)	95, 289, 335, 342, 371, 408, 482
SfaNI	GCATC	1 cut(s)	32
SinI	GGWCC	1 cut(s)	458
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	4 cut(s)	87, 175, 401, 417
StyD4I	CCNGG	2 cut(s)	92, 277
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	77, 296
TasI	AATT	1 cut(s)	556
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	3 cut(s)	56, 300, 335
Tru9I	TTAA	3 cut(s)	56, 300, 335
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	2 cut(s)	414, 443
TspDTI	ATGAA	5 cut(s)	17, 48, 333, 505, 506
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	458
XceI	RCATGY	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.