Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009804

Physical Location & Seq

Genomic Coordinates Forward (+)

10725601 .. 10729144

Gene Structure 3544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG072400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGAAACGTAGCAAGATGTCCCGCTGCAGCATGCGCATGCGGCGCAGCGTGCATTGGACATTGTTTCCTCAATGTTCTTTGATTCTTCTCCTTCTGTTTCATATTAACGTTGCCTCCTCAGCTGCACCCCCACCAGACCCCGCAGACACCCTCCTCAAGTTCAAGGACTCACTCAAGATTAGTGGTAATGCGCTGAGTAATTGGGTGAAGACCACGCCTCCGTGCGATGGCAGAGAGGCGAATTGGGATGGCCTTCTTTGTGGCGAGCAGGGGAAGATTTGGGGCTTGCAGCTTGAAAAGATGGGGTTAAGCGGCCACATTAATGTCACAGCACTCACGCAGCTTCCAGACTTAAGAACCATAAGCATGATGCAAAATAATTTTGAGGGTTCGTTGCCGGACTGGAGGAAACTTAGTGCGTTGAAAACGTTGTATATGTCTGAAAATAAATTCTCGGGGGAGATTCCCTCCGACTTGTTCCAGGGAATGAAGCAATTGAAGAAGCTTCATTTGGCGAATAACCAGTTTACGGGTCAGATTCCCAAGTCGTTGACAACCTTGGATAAGCTGGTGGAGCTGACCCTTCAAGGGAACAAATTTTCAGGCAAAATACCAGATTTTCCACAAGTTCGATTGGCTGTCTTTAATGCGTCCGAAAACGACTTGGAGGGTGAAATCCCAGACAGCTTGAGAAAGTTGAGGGCAGACTACTTTGCTGGGAATAAAGATCTATGTGGAGCTCCATTACATGCATGCTCAGCTCCCTCCTCACACGTTACTACAGAGAAGCCCACGGGTGTGAGCACCTCCCTAATTGTGATTATGATTGTGATAGCAGTCATATCCATCGGTGCGGCAATTTTCTTTGTCATCGTCAGACGTCGCAACAAAAGATCCGAATACTTATCGTCAAATATAGAGGCTCCACCGGCATCATCAGTCCAGAACAGGTCAGTATCACCAGTTCCGAAAGAACCAGACCAGGTTAGCCAAACCTCAGAGCACTCGAGTAAAGAAGCAGGAGGTGGAGGAGGAAGCAGTGGGAAGAAGGCTGATAGCTTGAAGCTCTCGTTTGTCCGAGACGACAGGGAAAGGTTTGATATGCAAGACTTGCTAAAAGCCTCCGCTGAAGTGTTGGGCAGCGGCAGCTTTGGGTCTTCTTACAAGGCCGCGCTGCTGACTGGACCGGTGATGGTTGTGAAGAGGTATAAGCAGATGAACAATGTGGGAAGAGAGGAGTTCCAAGAGCATATGAGGAGAATAGGGAGACTGGGACACCTTAATTTGCTTCCACTTGTGGCTTATTACTATAAGAAAGAAGAGAAGCTCTTGATTACCGACCATGTTCCGAATGGCAGCTTGGCTGTTCGTCTTCATGGACACCAAAGCTTAGGTCAACCAAGCCTTGACTGGCCAACGCGTTTGAAGATTGTCAAAGGTGTAGCCCAAGGCTTAAAATACCTCTACAGTGAGCTGCCGAGCGTAATCACGCCCCACGGCCACCTGAAATCCTCGAACGTTCTTCTCAGCAAATCCTTCGAACCCCTCATCACCGACTATGGCCTAATTCCTGTAGTTAACCAAGAGCATGCTCAGACCCTAATGGTGGCGTACAAGTCCCCTGAGTACGTTGCAACCAAGCGGATCACAAAGAAGACCGATGTATGGAGCCTCGGTGTGCTCATCTTGGAAATCCTAACCGGGAAGTTGCCAACCAACTTTTTGCAACACGGTAAGGGAAGCGAGGAGGATCTGGCGAGCTGGGTGAACTCGGTGCCTAGAGAGGAGTGGTTCACGCAGGTGTTCGATAGGGAAATGGGTGCAAACAAGAACTGCGAGGGGGAGATGCTGAAGCTCTTGAACATTGGGTTGGATTGCTGCGAAGGGGATGTGGAGAAGAGGTGGGATATGAAAGAGGCTGTGGAGAGGATTGAAGAGTTGAAAGAAAAGGAAGATGGTGGTGGTAGTGGTGGTAGCGGTCCGAATGAGGATCTCATGTCTTCTTGCGCTAGTGAAGGTGACACCACGAAGATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

679

Amino Acids

75.03

Weight (kDa)

8.57

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	48 - 87	5.6e-07	Leucine rich repeat N-terminal domain
LRR_14	PF23598	96 - 202	7.2e-06	Leucine-rich repeat region
LRR_8	PF13855	140 - 200	1e-08	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	377 - 643	1.2e-29	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	377 - 642	9.2e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07040 AT5G35390
fragaria_vesca	FvH4_4g06060 FvH4_5g22250
malus_domestica	MD13G1232600.v1.1 MD16G1238200.v1.1
prunus_persica	Prupe.1G064100_v2.0.a1
pyrus_communis	pycom13g20500 pycom13g20530
rosa_chinensis	RchiOBHm_Chr4g0397621
rosa_laevigata	RLG00000009423
rosa_multiflora	Rmu_co8327933.1_g000001 Rmu_sc0002729.1_g000002 Rmu_sc0005653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342430
rosa_rugosa	Rorug03G0342300
rosa_samantha	Rh4AG079400 Rh4BG077300 Rh4CG085000 Rh4DG072400
rosa_wichuraiana	Rw4G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1789
AatII	GACGTC	1 cut(s)	883
Acc16I	TGCGCA	1 cut(s)	35
Acc36I	ACCTGC	1 cut(s)	1789
AccB1I	GGYRCC	1 cut(s)	1774
AccII	CGCG	2 cut(s)	1172, 1420
AclI	AACGTT	3 cut(s)	108, 428, 1518
AclWI	GGATC	4 cut(s)	888, 1652, 1758, 1998
AcoI	YGGCCR	3 cut(s)	313, 1412, 1498
AcsI	RAATTY	2 cut(s)	449, 596
AcuI	CTGAAG	2 cut(s)	1149, 1871
AcyI	GRCGYC	1 cut(s)	880
AfaI	GTAC	2 cut(s)	1613, 1628
AfiI	CCNNNNNNNGG	5 cut(s)	227, 529, 588, 1606, 1665
AflII	CTTAAG	1 cut(s)	352
AflIII	ACRYGT	2 cut(s)	772, 1418
AgeI	ACCGGT	1 cut(s)	1186
AjnI	CCWGG	2 cut(s)	480, 981
AjuI	GAANNNNNNNTTGG	6 cut(s)	494, 526, 1343, 1375, 1853, 1885
AleI	CACNNNNGTG	2 cut(s)	797, 1799
Alw21I	GWGCWC	4 cut(s)	742, 806, 1005, 1683
Alw26I	GTCTC	2 cut(s)	1074, 1261
AlwI	GGATC	4 cut(s)	888, 1652, 1758, 1998
Ama87I	CYCGRG	2 cut(s)	454, 1006
AoxI	GGCC	6 cut(s)	250, 313, 1167, 1412, 1498, 1561
ApoI	RAATTY	2 cut(s)	449, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	1378, 1410
AseI	ATTAAT	1 cut(s)	321
AsiGI	ACCGGT	1 cut(s)	1186
AspLEI	GCGC	5 cut(s)	36, 45, 193, 1174, 2009
AspS9I	GGNCC	2 cut(s)	1184, 1979
AsuC2I	CCSGG	1 cut(s)	1702
AsuHPI	GGTGA	7 cut(s)	217, 683, 951, 1201, 1543, 1777, 2030
AsuII	TTCGAA	1 cut(s)	1539
AvaI	CYCGRG	2 cut(s)	454, 1006
AvaII	GGWCC	2 cut(s)	1184, 1979
BalI	TGGCCA	1 cut(s)	1414
BanI	GGYRCC	1 cut(s)	1774
BanII	GRGCYC	1 cut(s)	742
BbsI	GAAGAC	5 cut(s)	215, 1149, 1364, 1661, 1992
Bbv12I	GWGCWC	4 cut(s)	742, 806, 1005, 1683
BbvCI	CCTCAGC	1 cut(s)	118
BccI	CCATC	7 cut(s)	221, 242, 295, 854, 1186, 1949, 2026
BceAI	ACGGC	1 cut(s)	1513
BcgI	CGANNNNNNTGC	2 cut(s)	1519, 1553
BciT130I	CCWGG	2 cut(s)	482, 983
BcnI	CCSGG	1 cut(s)	1702
BcoDI	GTCTC	2 cut(s)	1074, 1261
BfaI	CTAG	2 cut(s)	1779, 2010
BfmI	CTRYAG	4 cut(s)	25, 780, 1465, 1572
BfrI	CTTAAG	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	1789
BglII	AGATCT	1 cut(s)	727
BlpI	GCTNAGC	1 cut(s)	757
Bme1390I	CCNGG	3 cut(s)	482, 983, 1702
Bme18I	GGWCC	2 cut(s)	1184, 1979
BmeT110I	CYCGRG	2 cut(s)	454, 1006
BmgT120I	GGNCC	2 cut(s)	1184, 1979
BmiI	GGNNCC	3 cut(s)	924, 1670, 1776
BmrFI	CCNGG	3 cut(s)	482, 983, 1702
BmrI	ACTGGG	1 cut(s)	1280
BmsI	GCATC	3 cut(s)	360, 941, 1836
BmuI	ACTGGG	1 cut(s)	1280
BpiI	GAAGAC	5 cut(s)	215, 1149, 1364, 1661, 1992
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BpmI	CTGGAG	1 cut(s)	424
Bpu10I	CCTNAGC	2 cut(s)	118, 1390
Bpu1102I	GCTNAGC	1 cut(s)	757
Bpu14I	TTCGAA	1 cut(s)	1539
BpuEI	CTTGAG	3 cut(s)	140, 158, 709
BpuMI	CCSGG	1 cut(s)	1702
BsaHI	GRCGYC	1 cut(s)	880
BsaJI	CCNNGG	6 cut(s)	481, 558, 792, 1447, 1495, 1672
BsaWI	WCCGGW	1 cut(s)	1186
BsaXI	ACNNNNNCTCC	8 cut(s)	98, 128, 202, 232, 1660, 1690, 1886, 1916
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 529, 588, 1606, 1665
Bse118I	RCCGGY	2 cut(s)	928, 1186
Bse1I	ACTGG	6 cut(s)	407, 523, 962, 1186, 1275, 1415
BseBI	CCWGG	2 cut(s)	482, 983
BseDI	CCNNGG	6 cut(s)	481, 558, 792, 1447, 1495, 1672
BseGI	GGATG	2 cut(s)	253, 1894
BseLI	CCNNNNNNNGG	5 cut(s)	227, 529, 588, 1606, 1665
BseMII	CTCAG	7 cut(s)	132, 185, 771, 1011, 1540, 1607, 1614
BseNI	ACTGG	6 cut(s)	407, 523, 962, 1186, 1275, 1415
BseRI	GAGGAG	8 cut(s)	106, 143, 757, 1044, 1250, 1270, 1760, 1799
BseYI	CCCAGC	2 cut(s)	716, 1761
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	2 cut(s)	1172, 1420
BshFI	GGCC	6 cut(s)	252, 315, 1169, 1414, 1500, 1563
BshNI	GGYRCC	1 cut(s)	1774
BshTI	ACCGGT	1 cut(s)	1186
BsiHKAI	GWGCWC	4 cut(s)	742, 806, 1005, 1683
BsiHKCI	CYCGRG	2 cut(s)	454, 1006
BsiSI	CCGG	4 cut(s)	398, 929, 1187, 1701
BslFI	GGGAC	3 cut(s)	4, 1287, 1603
BslI	CCNNNNNNNGG	5 cut(s)	227, 529, 588, 1606, 1665
BsmAI	GTCTC	2 cut(s)	1074, 1261
BsmBI	CGTCTC	1 cut(s)	1074
BsmFI	GGGAC	3 cut(s)	4, 1287, 1603
BsnI	GGCC	6 cut(s)	252, 315, 1169, 1414, 1500, 1563
BsoBI	CYCGRG	2 cut(s)	454, 1006
Bsp119I	TTCGAA	1 cut(s)	1539
Bsp1286I	GDGCHC	4 cut(s)	742, 806, 1005, 1683
Bsp143I	GATC	5 cut(s)	727, 893, 1644, 1750, 1990
Bsp1720I	GCTNAGC	1 cut(s)	757
BspANI	GGCC	6 cut(s)	252, 315, 1169, 1414, 1500, 1563
BspCNI	CTCAG	7 cut(s)	131, 186, 770, 1010, 1539, 1606, 1615
BspFNI	CGCG	2 cut(s)	1172, 1420
BspLI	GGNNCC	3 cut(s)	924, 1670, 1776
BspMAI	CTGCAG	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	1789
BspPI	GGATC	4 cut(s)	888, 1652, 1758, 1998
BspT104I	TTCGAA	1 cut(s)	1539
BspT107I	GGYRCC	1 cut(s)	1774
BspTI	CTTAAG	1 cut(s)	352
BsrFI	RCCGGY	2 cut(s)	928, 1186
BsrI	ACTGG	6 cut(s)	407, 523, 962, 1186, 1275, 1415
BssAI	RCCGGY	2 cut(s)	928, 1186
BssECI	CCNNGG	6 cut(s)	481, 558, 792, 1447, 1495, 1672
BssMI	GATC	5 cut(s)	727, 893, 1644, 1750, 1990
BssNI	GRCGYC	1 cut(s)	880
BssT1I	CCWWGG	2 cut(s)	558, 1447
Bst2UI	CCWGG	2 cut(s)	482, 983
Bst4CI	ACNGT	2 cut(s)	1469, 1733
Bst6I	CTCTTC	5 cut(s)	1196, 1225, 1314, 1892, 1929
BstACI	GRCGYC	1 cut(s)	880
BstAFI	CTTAAG	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	1111
BstBI	TTCGAA	1 cut(s)	1539
BstC8I	GCNNGC	8 cut(s)	32, 38, 50, 266, 287, 754, 1590, 1759
BstDEI	CTNAG	9 cut(s)	118, 194, 413, 757, 997, 1390, 1526, 1593, 1623
BstDSI	CCRYGG	2 cut(s)	792, 1495
BstF5I	GGATG	2 cut(s)	253, 1894
BstFNI	CGCG	2 cut(s)	1172, 1420
BstHHI	GCGC	5 cut(s)	36, 45, 193, 1174, 2009
BstKTI	GATC	5 cut(s)	730, 896, 1647, 1753, 1993
BstMAI	GTCTC	2 cut(s)	1074, 1261
BstMBI	GATC	5 cut(s)	727, 893, 1644, 1750, 1990
BstNI	CCWGG	2 cut(s)	482, 983
BstNSI	RCATGY	5 cut(s)	34, 40, 752, 756, 1592
BstSCI	CCNGG	3 cut(s)	480, 981, 1700
BstSFI	CTRYAG	4 cut(s)	25, 780, 1465, 1572
BstUI	CGCG	2 cut(s)	1172, 1420
BstV2I	GAAGAC	5 cut(s)	215, 1149, 1364, 1661, 1992
BstX2I	RGATCY	4 cut(s)	727, 893, 1750, 1990
BstXI	CCANNNNNNTGG	1 cut(s)	2032
BstYI	RGATCY	4 cut(s)	727, 893, 1750, 1990
BsuRI	GGCC	6 cut(s)	252, 315, 1169, 1414, 1500, 1563
BtgI	CCRYGG	2 cut(s)	792, 1495
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	253, 1894
BtsI	GCAGTG	1 cut(s)	1045
BtsIMutI	CAGTG	2 cut(s)	1045, 1474
BveI	ACCTGC	1 cut(s)	1789
Cac8I	GCNNGC	8 cut(s)	32, 38, 50, 266, 287, 754, 1590, 1759
CfoI	GCGC	5 cut(s)	36, 45, 193, 1174, 2009
Cfr10I	RCCGGY	2 cut(s)	928, 1186
Cfr13I	GGNCC	2 cut(s)	1184, 1979
CpoI	CGGWCCG	1 cut(s)	1979
CseI	GACGC	1 cut(s)	639
CsiI	ACCWGGT	1 cut(s)	981
Csp6I	GTAC	2 cut(s)	1612, 1627
CspAI	ACCGGT	1 cut(s)	1186
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CspI	CGGWCCG	1 cut(s)	1979
CviAII	CATG	9 cut(s)	31, 37, 367, 749, 753, 1343, 1376, 1589, 1996
CviQI	GTAC	2 cut(s)	1612, 1627
DdeI	CTNAG	9 cut(s)	118, 194, 413, 757, 997, 1390, 1526, 1593, 1623
DpnI	GATC	5 cut(s)	729, 895, 1646, 1752, 1992
DpnII	GATC	5 cut(s)	727, 893, 1644, 1750, 1990
EaeI	YGGCCR	3 cut(s)	313, 1412, 1498
Eam1104I	CTCTTC	5 cut(s)	1196, 1225, 1314, 1892, 1929
EarI	CTCTTC	5 cut(s)	1196, 1225, 1314, 1892, 1929
Ecl136II	GAGCTC	1 cut(s)	740
Eco130I	CCWWGG	2 cut(s)	558, 1447
Eco24I	GRGCYC	1 cut(s)	742
Eco47I	GGWCC	2 cut(s)	1184, 1979
Eco53kI	GAGCTC	1 cut(s)	740
Eco57I	CTGAAG	2 cut(s)	1149, 1871
Eco88I	CYCGRG	2 cut(s)	454, 1006
EcoICRI	GAGCTC	1 cut(s)	740
EcoRII	CCWGG	2 cut(s)	480, 981
EcoT14I	CCWWGG	2 cut(s)	558, 1447
EcoT22I	ATGCAT	1 cut(s)	754
EcoT38I	GRGCYC	1 cut(s)	742
ErhI	CCWWGG	2 cut(s)	558, 1447
Esp3I	CGTCTC	1 cut(s)	1074
FaeI	CATG	9 cut(s)	34, 40, 370, 752, 756, 1346, 1379, 1592, 1999
FaqI	GGGAC	3 cut(s)	4, 1287, 1603
FatI	CATG	9 cut(s)	30, 36, 366, 748, 752, 1342, 1375, 1588, 1995
FauI	CCCGC	2 cut(s)	29, 148
FauNDI	CATATG	1 cut(s)	1251
FokI	GGATG	2 cut(s)	260, 1901
FriOI	GRGCYC	1 cut(s)	742
FspAI	RTGCGCAY	1 cut(s)	35
FspBI	CTAG	2 cut(s)	1779, 2010
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	5 cut(s)	35, 44, 192, 1173, 2008
GsaI	CCCAGC	2 cut(s)	720, 1765
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	6 cut(s)	252, 315, 1169, 1414, 1500, 1563
HapII	CCGG	4 cut(s)	398, 929, 1187, 1701
HgaI	GACGC	1 cut(s)	639
HhaI	GCGC	5 cut(s)	36, 45, 193, 1174, 2009
Hin1I	GRCGYC	1 cut(s)	880
Hin1II	CATG	9 cut(s)	34, 40, 370, 752, 756, 1346, 1379, 1592, 1999
Hin6I	GCGC	5 cut(s)	34, 43, 191, 1172, 2007
HinP1I	GCGC	5 cut(s)	34, 43, 191, 1172, 2007
HincII	GTYRAC	3 cut(s)	552, 1397, 1579
HindII	GTYRAC	3 cut(s)	552, 1397, 1579
HindIII	AAGCTT	2 cut(s)	503, 1387
HinfI	GANTC	4 cut(s)	82, 167, 463, 538
HpaI	GTTAAC	1 cut(s)	1579
HpaII	CCGG	4 cut(s)	398, 929, 1187, 1701
HphI	GGTGA	7 cut(s)	217, 683, 951, 1201, 1543, 1777, 2030
Hpy166II	GTNNAC	6 cut(s)	528, 552, 1397, 1579, 1768, 1794
Hpy188III	TCNNGA	5 cut(s)	175, 347, 943, 1330, 1858
Hpy8I	GTNNAC	6 cut(s)	528, 552, 1397, 1579, 1768, 1794
Hpy99I	CGWCG	1 cut(s)	885
HpyAV	CCTTC	7 cut(s)	101, 263, 593, 1042, 1546, 1877, 2009
HpyCH4III	ACNGT	2 cut(s)	1469, 1733
HpyCH4IV	ACGT	7 cut(s)	7, 108, 428, 774, 880, 1518, 1629
HpyF3I	CTNAG	9 cut(s)	118, 194, 413, 757, 997, 1390, 1526, 1593, 1623
HpySE526I	ACGT	7 cut(s)	7, 108, 428, 774, 880, 1518, 1629
Hsp92I	GRCGYC	1 cut(s)	880
Hsp92II	CATG	9 cut(s)	34, 40, 370, 752, 756, 1346, 1379, 1592, 1999
HspAI	GCGC	5 cut(s)	34, 43, 191, 1172, 2007
KspAI	GTTAAC	1 cut(s)	1579
Kzo9I	GATC	5 cut(s)	727, 893, 1644, 1750, 1990
LmnI	GCTCC	6 cut(s)	574, 737, 745, 766, 928, 1668
LweI	GCATC	3 cut(s)	360, 941, 1836
MabI	ACCWGGT	1 cut(s)	981
MaeI	CTAG	2 cut(s)	1779, 2010
MaeII	ACGT	7 cut(s)	7, 108, 428, 774, 880, 1518, 1629
MaeIII	GTNAC	3 cut(s)	325, 775, 2018
MalI	GATC	5 cut(s)	729, 895, 1646, 1752, 1992
MboI	GATC	5 cut(s)	727, 893, 1644, 1750, 1990
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	4 cut(s)	727, 893, 1750, 1990
MhlI	GDGCHC	4 cut(s)	742, 806, 1005, 1683
MlsI	TGGCCA	1 cut(s)	1414
MluI	ACGCGT	1 cut(s)	1418
MluNI	TGGCCA	1 cut(s)	1414
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	495, 1851
Mox20I	TGGCCA	1 cut(s)	1414
Mph1103I	ATGCAT	1 cut(s)	754
MscI	TGGCCA	1 cut(s)	1414
MseI	TTAA	8 cut(s)	105, 308, 321, 353, 645, 1281, 1454, 1578
MslI	CAYNNNNRTG	6 cut(s)	35, 321, 365, 797, 1799, 2030
Msp20I	TGGCCA	1 cut(s)	1414
MspA1I	CMGCKG	4 cut(s)	24, 122, 1127, 1143
MspCI	CTTAAG	1 cut(s)	352
MspI	CCGG	4 cut(s)	398, 929, 1187, 1701
MspR9I	CCNGG	3 cut(s)	482, 983, 1702
MunI	CAATTG	1 cut(s)	494
MvaI	CCWGG	2 cut(s)	482, 983
MvnI	CGCG	2 cut(s)	1172, 1420
NciI	CCSGG	1 cut(s)	1702
NdeI	CATATG	1 cut(s)	1251
NdeII	GATC	5 cut(s)	727, 893, 1644, 1750, 1990
NlaIII	CATG	9 cut(s)	34, 40, 370, 752, 756, 1346, 1379, 1592, 1999
NlaIV	GGNNCC	3 cut(s)	924, 1670, 1776
NmeAIII	GCCGAG	1 cut(s)	1503
NmuCI	GTSAC	2 cut(s)	325, 2018
NsbI	TGCGCA	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	5 cut(s)	34, 40, 752, 756, 1592
NspV	TTCGAA	1 cut(s)	1539
OliI	CACNNNNGTG	2 cut(s)	797, 1799
PaeI	GCATGC	4 cut(s)	34, 40, 756, 1592
PaeR7I	CTCGAG	1 cut(s)	1006
PaqCI	CACCTGC	1 cut(s)	1789
PfeI	GAWTC	3 cut(s)	82, 463, 538
PinAI	ACCGGT	1 cut(s)	1186
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PshBI	ATTAAT	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	742
Psp1406I	AACGTT	3 cut(s)	108, 428, 1518
Psp6I	CCWGG	2 cut(s)	480, 981
PspFI	CCCAGC	2 cut(s)	716, 1761
PspGI	CCWGG	2 cut(s)	480, 981
PspN4I	GGNNCC	3 cut(s)	924, 1670, 1776
PspPI	GGNCC	2 cut(s)	1184, 1979
PspXI	VCTCGAGB	1 cut(s)	1006
PsrI	GAACNNNNNNTAC	2 cut(s)	948, 980
PstI	CTGCAG	1 cut(s)	29
PsuI	RGATCY	4 cut(s)	727, 893, 1750, 1990
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	1613, 1628
RsaNI	GTAC	2 cut(s)	1612, 1627
RseI	CAYNNNNRTG	6 cut(s)	35, 321, 365, 797, 1799, 2030
Rsr2I	CGGWCCG	1 cut(s)	1979
RsrII	CGGWCCG	1 cut(s)	1979
SacI	GAGCTC	1 cut(s)	742
SaqAI	TTAA	8 cut(s)	105, 308, 321, 353, 645, 1281, 1454, 1578
Sau3AI	GATC	5 cut(s)	727, 893, 1644, 1750, 1990
Sau96I	GGNCC	2 cut(s)	1184, 1979
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	482, 983, 1702
SduI	GDGCHC	4 cut(s)	742, 806, 1005, 1683
SexAI	ACCWGGT	1 cut(s)	981
SfaNI	GCATC	3 cut(s)	360, 941, 1836
SfcI	CTRYAG	4 cut(s)	25, 780, 1465, 1572
Sfr274I	CTCGAG	1 cut(s)	1006
SfuI	TTCGAA	1 cut(s)	1539
SinI	GGWCC	2 cut(s)	1184, 1979
SlaI	CTCGAG	1 cut(s)	1006
SmiMI	CAYNNNNRTG	6 cut(s)	35, 321, 365, 797, 1799, 2030
SmlI	CTYRAG	5 cut(s)	155, 173, 352, 688, 1006
SmoI	CTYRAG	5 cut(s)	155, 173, 352, 688, 1006
SphI	GCATGC	4 cut(s)	34, 40, 756, 1592
SspMI	CTAG	2 cut(s)	1779, 2010
SstI	GAGCTC	1 cut(s)	742
StyD4I	CCNGG	3 cut(s)	480, 981, 1700
StyI	CCWWGG	2 cut(s)	558, 1447
TaaI	ACNGT	2 cut(s)	1469, 1733
TaiI	ACGT	7 cut(s)	10, 111, 431, 777, 883, 1521, 1632
TaqI	TCGA	5 cut(s)	631, 1007, 1514, 1539, 1806
TaqII	GACCGA	1 cut(s)	1673
TauI	GCSGC	5 cut(s)	43, 315, 857, 1146, 1172
TfiI	GAWTC	3 cut(s)	82, 463, 538
Tru1I	TTAA	8 cut(s)	105, 308, 321, 353, 645, 1281, 1454, 1578
Tru9I	TTAA	8 cut(s)	105, 308, 321, 353, 645, 1281, 1454, 1578
TscAI	CASTG	2 cut(s)	1045, 1474
TseFI	GTSAC	2 cut(s)	325, 2018
Tsp45I	GTSAC	2 cut(s)	325, 2018
TspDTI	ATGAA	7 cut(s)	17, 89, 497, 503, 1232, 1364, 1925
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	2 cut(s)	1045, 1474
Vha464I	CTTAAG	1 cut(s)	352
VpaK11BI	GGWCC	2 cut(s)	1184, 1979
VspI	ATTAAT	1 cut(s)	321
XapI	RAATTY	2 cut(s)	449, 596
XceI	RCATGY	5 cut(s)	34, 40, 752, 756, 1592
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1349, 1407
XhoI	CTCGAG	1 cut(s)	1006
XspI	CTAG	2 cut(s)	1779, 2010
ZraI	GACGTC	1 cut(s)	881
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.