Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327933.1

Orthogroup ID

OG0009804

Physical Location & Seq

Genomic Coordinates Forward (+)

238 .. 967

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327933.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 700 bp

atgtcccgctgcagcatgcgcatgcggcgcagcgtgcattggacattgtttcctcaatgttctttgattcttctccttctgtttcatattaacgttgcctcctcagctgcacccccaccagaccccacagacaccctcctcaagttcaaggactcactcaagattagtggtaatgcgctgagtaattgggtgaagaccacgcctccgtgcgatggcaaaaaggcgaattgggatggcgttctttgtggcgaggggaagatttggggcttgcagcttgaaaagatggggttaagcggccacattaatgtcacagcactcacgcagcttccagacttaagaaccataagcatgatgcaaaataattttgagggttcgttgccggactggaggaaacttagtacgttgaaaacgttgtatatgtctgaaaataaattctcgggggacattccctccgactttttccagggaatgaaacaattgaagaagcttcatttggcgaataaccagtttacgggtcagattcccaagtcgttgacaaccttggataagctggtggagctgacccttcaagggaacaaattttcaggcaaaataccagattttccacaagttcgatggactgtctttaatgcgtccaaaaacgacttggagggtgagatcccagacggcttgagaaagttgagtacagactgctttgctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

233

Amino Acids

26.09

Weight (kDa)

9.21

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07040 AT5G35390
fragaria_vesca	FvH4_4g06060 FvH4_5g22250
malus_domestica	MD13G1232600.v1.1 MD16G1238200.v1.1
prunus_persica	Prupe.1G064100_v2.0.a1
pyrus_communis	pycom13g20500 pycom13g20530
rosa_chinensis	RchiOBHm_Chr4g0397621
rosa_laevigata	RLG00000009423
rosa_multiflora	Rmu_co8327933.1_g000001 Rmu_sc0002729.1_g000002 Rmu_sc0005653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342430
rosa_rugosa	Rorug03G0342300
rosa_samantha	Rh4AG079400 Rh4BG077300 Rh4CG085000 Rh4DG072400
rosa_wichuraiana	Rw4G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
AciI	CCGC	3 cut(s)	7, 25, 294
AclI	AACGTT	2 cut(s)	93, 410
AclWI	GGATC	1 cut(s)	652
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	431, 578
AfaI	GTAC	2 cut(s)	400, 685
AfiI	CCNNNNNNNGG	3 cut(s)	212, 511, 570
AflII	CTTAAG	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	148, 278, 406, 481, 569
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	6 cut(s)	107, 274, 325, 487, 550, 559
AluI	AGCT	6 cut(s)	107, 274, 325, 487, 550, 559
AlwI	GGATC	1 cut(s)	652
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	6 cut(s)	9, 12, 30, 107, 271, 322
ApoI	RAATTY	2 cut(s)	431, 578
AseI	ATTAAT	1 cut(s)	303
AspLEI	GCGC	3 cut(s)	21, 30, 178
AsuHPI	GGTGA	2 cut(s)	202, 665
AvaI	CYCGRG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	5 cut(s)	24, 42, 94, 283, 334
BccI	CCATC	4 cut(s)	206, 227, 277, 609
BceAI	ACGGC	1 cut(s)	682
BciT130I	CCWGG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	10
BfrI	CTTAAG	1 cut(s)	334
BisI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
BlsI	GCNGC	8 cut(s)	11, 14, 27, 32, 109, 273, 296, 324
Bme1390I	CCNGG	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	103
BpuEI	CTTGAG	3 cut(s)	125, 143, 691
BsaJI	CCNNGG	2 cut(s)	463, 540
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 187, 217, 434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 511, 570
Bse1I	ACTGG	2 cut(s)	389, 505
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	463, 540
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	3 cut(s)	212, 511, 570
BseMII	CTCAG	2 cut(s)	117, 170
BseNI	ACTGG	2 cut(s)	389, 505
BseRI	GAGGAG	2 cut(s)	91, 128
BseXI	GCAGC	5 cut(s)	24, 42, 94, 283, 334
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	3 cut(s)	212, 511, 570
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	657
BspACI	CCGC	3 cut(s)	7, 25, 294
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	116, 171
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	652
BspTI	CTTAAG	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	389, 505
BssECI	CCNNGG	2 cut(s)	463, 540
BssMI	GATC	1 cut(s)	657
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	622
BstAFI	CTTAAG	1 cut(s)	334
BstC8I	GCNNGC	4 cut(s)	17, 23, 35, 269
BstDEI	CTNAG	3 cut(s)	103, 179, 395
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	3 cut(s)	21, 30, 178
BstKTI	GATC	1 cut(s)	660
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 25, 27, 34, 104, 556
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	2 cut(s)	19, 25
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	5 cut(s)	24, 42, 94, 283, 334
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
BsuRI	GGCC	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	4 cut(s)	17, 23, 35, 269
CfoI	GCGC	3 cut(s)	21, 30, 178
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	399, 684
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	3 cut(s)	16, 22, 349
CviJI	RGCY	9 cut(s)	107, 267, 274, 297, 325, 487, 550, 559, 669
CviKI_1	RGCY	9 cut(s)	107, 267, 274, 297, 325, 487, 550, 559, 669
CviQI	GTAC	2 cut(s)	399, 684
DdeI	CTNAG	3 cut(s)	103, 179, 395
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	3 cut(s)	19, 25, 352
FaiI	YATR	7 cut(s)	17, 23, 87, 344, 350, 417, 419
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	3 cut(s)	15, 21, 348
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
FspAI	RTGCGCAY	1 cut(s)	20
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	3 cut(s)	20, 29, 177
GluI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	1 cut(s)	621
HhaI	GCGC	3 cut(s)	21, 30, 178
Hin1II	CATG	3 cut(s)	19, 25, 352
Hin6I	GCGC	3 cut(s)	19, 28, 176
HinP1I	GCGC	3 cut(s)	19, 28, 176
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	67, 152, 520
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	2 cut(s)	202, 665
Hpy166II	GTNNAC	2 cut(s)	510, 534
Hpy188I	TCNGA	3 cut(s)	424, 454, 519
Hpy188III	TCNNGA	2 cut(s)	160, 329
Hpy8I	GTNNAC	2 cut(s)	510, 534
HpyAV	CCTTC	2 cut(s)	86, 575
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4IV	ACGT	3 cut(s)	93, 401, 410
HpyCH4V	TGCA	5 cut(s)	12, 37, 110, 271, 355
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 25, 27, 34, 104, 556
HpyF3I	CTNAG	3 cut(s)	103, 179, 395
HpySE526I	ACGT	3 cut(s)	93, 401, 410
Hsp92II	CATG	3 cut(s)	19, 25, 352
HspAI	GCGC	3 cut(s)	19, 28, 176
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	5 cut(s)	24, 42, 94, 283, 334
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	3 cut(s)	93, 401, 410
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	4 cut(s)	62, 205, 268, 493
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	1 cut(s)	657
MluCI	AATT	6 cut(s)	184, 226, 361, 431, 476, 578
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	477
MseI	TTAA	5 cut(s)	90, 290, 303, 335, 627
MslI	CAYNNNNRTG	3 cut(s)	20, 303, 347
MspA1I	CMGCKG	2 cut(s)	9, 107
MspCI	CTTAAG	1 cut(s)	334
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	464
MunI	CAATTG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	6 cut(s)	18, 25, 27, 34, 104, 556
NdeII	GATC	1 cut(s)	657
NlaIII	CATG	3 cut(s)	19, 25, 352
NmuCI	GTSAC	1 cut(s)	307
NsbI	TGCGCA	1 cut(s)	20
NspI	RCATGY	2 cut(s)	19, 25
PaeI	GCATGC	2 cut(s)	19, 25
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	67, 520
PkrI	GCNGC	8 cut(s)	11, 14, 27, 32, 109, 273, 296, 324
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	303
Psp1406I	AACGTT	2 cut(s)	93, 410
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	657
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	2 cut(s)	400, 685
RsaNI	GTAC	2 cut(s)	399, 684
RseI	CAYNNNNRTG	3 cut(s)	20, 303, 347
SaqAI	TTAA	5 cut(s)	90, 290, 303, 335, 627
SatI	GCNGC	8 cut(s)	10, 13, 26, 31, 108, 272, 295, 323
Sau3AI	GATC	1 cut(s)	657
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	10
SmiMI	CAYNNNNRTG	3 cut(s)	20, 303, 347
SmlI	CTYRAG	4 cut(s)	140, 158, 334, 670
SmoI	CTYRAG	4 cut(s)	140, 158, 334, 670
SphI	GCATGC	2 cut(s)	19, 25
Sse9I	AATT	6 cut(s)	184, 226, 361, 431, 476, 578
SsiI	CCGC	3 cut(s)	7, 25, 294
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	622
TaiI	ACGT	3 cut(s)	96, 404, 413
TaqI	TCGA	1 cut(s)	613
TasI	AATT	6 cut(s)	184, 226, 361, 431, 476, 578
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	2 cut(s)	28, 297
TfiI	GAWTC	2 cut(s)	67, 520
Tru1I	TTAA	5 cut(s)	90, 290, 303, 335, 627
Tru9I	TTAA	5 cut(s)	90, 290, 303, 335, 627
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	6 cut(s)	9, 12, 30, 107, 271, 322
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	74, 479, 485
TspGWI	ACGGA	1 cut(s)	195
Vha464I	CTTAAG	1 cut(s)	334
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	2 cut(s)	431, 578
XceI	RCATGY	2 cut(s)	19, 25
XcmI	CCANNNNNNNNNTGG	2 cut(s)	612, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.