Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009804

Physical Location & Seq

Genomic Coordinates Forward (+)

11387104 .. 11389922

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGCGCATGCGGCGCAGCGTGCATTGGACATTGTTTCCTCAATGTTCTTTGATTCTTCTCCTTCTGTTTCATATTAACGTTGCCTCCTCAGCTGCACCTCCACCAGACCCCGCAGACACCCTCCTCAAGTTCAAGGACTCACTCAAGATTAGTGGTAATGCGCTGAGCAATTGGGTGAAGACCACGCCTCCGTGCGATGGCAAAAAGGCGAATTGGGATGGCGTTCTTTGTGGCGAGGGGAAGATTTGGGGCTTGCAGCTTGAAAAGATGGGGTTAAGCGGCCACATTAATGTCACAGAACTCACGCAGCTTCCAGACTTGAGAACCATAAGCATGATGCAAAATAATTTTGAGGGTTCGTTGCCGGACTGGAGGAAACTTAGTACGTTGAAAACGTTGTATATGTCTGAAAATAAATTCTCGGGGGACATTCCCTCCGACTTGTTCCAGGGAATGAAGCAATTGAAGAAGCTTCATTTGGCGAATAACCAGTTTACGGGTCAGATTCCCAAGTCGTTGACAACCTTGGATAAGCTGGTGGAGCTGACCCTTCAAGGGAACAAATTTTCAGGCAAAATACCAGATTTTCCACAAGTTCGATGGACTGTCTTTAATGCGTCCAAAAACGACTTGGAGGGTGAGATCCCAGACGGCTTGAGAAAGTTGAGTGCAGATTCCTTTGCTGGGAATAAAGATCTATGTGGAGCTCCATTACATGCATGCTCAGCTCCCTCCTCTCACGTTAATACAGAGAAGCCCACGGGTGTGAGCACCGCCCTAATTGTGATTATGATTGTGATAGCAGTCATATCCATCGGTGCGGCAATTTTCTTCATCATCGTCAGACGTCGCAACAAAAGATCCGAATACATATCATCAAATATAGAGGCTCCACCGGCACCATCAGTCCAGAACAGATCGGTATCACCAGTTCCAAAAGAACCAGACCAGGTTAGCCAAACCTCAGAGCACTCGAGTAAAGGAACAGGAGGAGGAGGAGGAAGCAGTGGAAAGAAGGCTGATAGCTTGAAGCTCTCGTTTGTCAGAGACGACAGGGAAAGGTTTGATATGCAAGACTTGCTAAAAGCCTCCGCCGAGGTGTTGGGCAGCGGCAGCTTCGGGTCTTCTTACAAGGCCGCGCTGCTGACTGGACCGGTGATGGTTGTGAAGAGGTATAAGCAGATGAACAATGTGGGAAGAGAGGAGTTCCAAGAGCATATGAGGAGAATAGGGAGACTGGGACACCCTAATTTGCTTCCACTTGTGGCTTATTACTATAAGAAAGAAGAGAAGCTCTTGATTACCGACCATGTTCAGAATGGCAGCTTGGCTGTTCGTCTTCATGGACACCAGAGCTTAGGTCAACCAAGCCTTGACTGGCCAACGCGTTTGAGGATTGTCAAAGGTGTAGCCCAAGGCTTAAAATACCTCTACAGTGAGCTGCCGAGCGTTATCACACCCCACGGCCACCTGAAATCCTCGAACGTTCTTCTCAGCAAATCCTTCGAACCCCTCATCACCGACTATGGCCTAATTCCTGTAGTTAACCAAGAGCATGCTCAGACCCTAATGGTGGCGTACAAGTCCCCTGAGTACGTTGCAACCAAGCGGATCACAAAGAAGACCGATGTATGGAGCCTCGGTGTGCTCATCTTGGAAATCCTAACCGGGAAGTTGCCAACCAACTTTTTACAACACGGTAAGGGAAGCGAGGAGGATCTGGCGAGCTGGGTGAACTCGGTGCCTAGAGAGGAGTGGTTCACGCAGGTGTTCGATAGGCAAATGGGTGCAAACAAGAACTGCGAGGGGGAGATGCTGAAGCTCTTGAACATTGGGTTGGATTGTTGCGAAGGGGATGTGGAGAAGAGGTGGGATATGAAAGAGGCTGTGGAGAAGATTGAAGAGTTGAAAGAAAAGGAAGATGGTGGTGGTAGTGGTGGTGGCGGTCCGAATGAGGATCTCATGTCTTCTTGCGCTAGTGAAGGTGACACCACGAAGATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

668

Amino Acids

73.62

Weight (kDa)

8.6

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	38 - 77	1.7e-08	Leucine rich repeat N-terminal domain
LRR_8	PF13855	106 - 165	3.3e-06	Leucine rich repeat
LRR_8	PF13855	129 - 189	5.1e-09	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	366 - 632	9.3e-31	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	366 - 631	7.5e-30	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07040 AT5G35390
fragaria_vesca	FvH4_4g06060 FvH4_5g22250
malus_domestica	MD13G1232600.v1.1 MD16G1238200.v1.1
prunus_persica	Prupe.1G064100_v2.0.a1
pyrus_communis	pycom13g20500 pycom13g20530
rosa_chinensis	RchiOBHm_Chr4g0397621
rosa_laevigata	RLG00000009423
rosa_multiflora	Rmu_co8327933.1_g000001 Rmu_sc0002729.1_g000002 Rmu_sc0005653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342430
rosa_rugosa	Rorug03G0342300
rosa_samantha	Rh4AG079400 Rh4BG077300 Rh4CG085000 Rh4DG072400
rosa_wichuraiana	Rw4G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1756
AatII	GACGTC	1 cut(s)	850
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	1756
AccB1I	GGYRCC	2 cut(s)	898, 1741
AccII	CGCG	2 cut(s)	1139, 1387
AclI	AACGTT	3 cut(s)	78, 395, 1485
AclWI	GGATC	5 cut(s)	637, 855, 1619, 1725, 1965
AcoI	YGGCCR	3 cut(s)	280, 1379, 1465
AcsI	RAATTY	2 cut(s)	416, 563
AcuI	CTGAAG	1 cut(s)	1838
AcyI	GRCGYC	1 cut(s)	847
AfaI	GTAC	3 cut(s)	385, 1580, 1595
AfiI	CCNNNNNNNGG	6 cut(s)	197, 496, 555, 684, 1573, 1632
AflIII	ACRYGT	1 cut(s)	1385
AgeI	ACCGGT	1 cut(s)	1153
AgsI	TTSAA	9 cut(s)	133, 263, 391, 466, 554, 1030, 1828, 1901, 1909
AjnI	CCWGG	2 cut(s)	447, 948
AjuI	GAANNNNNNNTTGG	6 cut(s)	461, 493, 1310, 1342, 1820, 1852
AleI	CACNNNNGTG	2 cut(s)	764, 1766
Alw21I	GWGCWC	4 cut(s)	709, 773, 972, 1650
Alw26I	GTCTC	2 cut(s)	1041, 1228
AlwI	GGATC	5 cut(s)	637, 855, 1619, 1725, 1965
Ama87I	CYCGRG	2 cut(s)	421, 973
AoxI	GGCC	5 cut(s)	280, 1134, 1379, 1465, 1528
ApeKI	GCWGC	9 cut(s)	15, 92, 256, 307, 1107, 1113, 1141, 1323, 1441
ApoI	RAATTY	2 cut(s)	416, 563
AseI	ATTAAT	1 cut(s)	288
AsiGI	ACCGGT	1 cut(s)	1153
AspLEI	GCGC	5 cut(s)	6, 15, 163, 1141, 1976
AspS9I	GGNCC	2 cut(s)	1151, 1946
AsuC2I	CCSGG	1 cut(s)	1669
AsuHPI	GGTGA	7 cut(s)	187, 650, 918, 1168, 1510, 1744, 1997
AsuII	TTCGAA	1 cut(s)	1506
AvaI	CYCGRG	2 cut(s)	421, 973
AvaII	GGWCC	2 cut(s)	1151, 1946
BalI	TGGCCA	1 cut(s)	1381
BanI	GGYRCC	2 cut(s)	898, 1741
BanII	GRGCYC	1 cut(s)	709
BbsI	GAAGAC	5 cut(s)	185, 1116, 1331, 1628, 1959
Bbv12I	GWGCWC	4 cut(s)	709, 773, 972, 1650
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	9 cut(s)	27, 79, 268, 319, 1119, 1125, 1128, 1335, 1428
BccI	CCATC	9 cut(s)	191, 212, 262, 594, 821, 910, 1153, 1916, 1993
BceAI	ACGGC	2 cut(s)	667, 1480
BcgI	CGANNNNNNTGC	2 cut(s)	1486, 1520
BciT130I	CCWGG	2 cut(s)	449, 950
BcnI	CCSGG	1 cut(s)	1669
BcoDI	GTCTC	2 cut(s)	1041, 1228
BfaI	CTAG	2 cut(s)	1746, 1977
BfmI	CTRYAG	2 cut(s)	1432, 1539
BfuAI	ACCTGC	1 cut(s)	1756
BglII	AGATCT	1 cut(s)	694
BlpI	GCTNAGC	2 cut(s)	164, 724
Bme1390I	CCNGG	3 cut(s)	449, 950, 1669
Bme18I	GGWCC	2 cut(s)	1151, 1946
BmeT110I	CYCGRG	2 cut(s)	421, 973
BmgT120I	GGNCC	2 cut(s)	1151, 1946
BmiI	GGNNCC	4 cut(s)	891, 900, 1637, 1743
BmrFI	CCNGG	3 cut(s)	449, 950, 1669
BmrI	ACTGGG	1 cut(s)	1247
BmsI	GCATC	2 cut(s)	327, 1803
BmuI	ACTGGG	1 cut(s)	1247
BpiI	GAAGAC	5 cut(s)	185, 1116, 1331, 1628, 1959
BpmI	CTGGAG	1 cut(s)	391
Bpu10I	CCTNAGC	2 cut(s)	88, 1357
Bpu1102I	GCTNAGC	2 cut(s)	164, 724
Bpu14I	TTCGAA	1 cut(s)	1506
BpuEI	CTTGAG	4 cut(s)	110, 128, 340, 676
BpuMI	CCSGG	1 cut(s)	1669
BsaBI	GATNNNNATC	1 cut(s)	922
BsaHI	GRCGYC	1 cut(s)	847
BsaJI	CCNNGG	7 cut(s)	448, 525, 759, 1095, 1414, 1462, 1639
BsaWI	WCCGGW	1 cut(s)	1153
Bsc4I	CCNNNNNNNGG	6 cut(s)	197, 496, 555, 684, 1573, 1632
Bse118I	RCCGGY	2 cut(s)	895, 1153
Bse1I	ACTGG	6 cut(s)	374, 490, 929, 1153, 1242, 1382
Bse8I	GATNNNNATC	1 cut(s)	922
BseBI	CCWGG	2 cut(s)	449, 950
BseDI	CCNNGG	7 cut(s)	448, 525, 759, 1095, 1414, 1462, 1639
BseGI	GGATG	2 cut(s)	223, 1861
BseJI	GATNNNNATC	1 cut(s)	922
BseLI	CCNNNNNNNGG	6 cut(s)	197, 496, 555, 684, 1573, 1632
BseMII	CTCAG	7 cut(s)	102, 155, 738, 978, 1507, 1574, 1581
BseNI	ACTGG	6 cut(s)	374, 490, 929, 1153, 1242, 1382
BseXI	GCAGC	9 cut(s)	27, 79, 268, 319, 1119, 1125, 1128, 1335, 1428
BseYI	CCCAGC	2 cut(s)	683, 1728
BsgI	GTGCAG	2 cut(s)	78, 690
Bsh1236I	CGCG	2 cut(s)	1139, 1387
BshFI	GGCC	5 cut(s)	282, 1136, 1381, 1467, 1530
BshNI	GGYRCC	2 cut(s)	898, 1741
BshTI	ACCGGT	1 cut(s)	1153
BsiHKAI	GWGCWC	4 cut(s)	709, 773, 972, 1650
BsiHKCI	CYCGRG	2 cut(s)	421, 973
BsiSI	CCGG	4 cut(s)	365, 896, 1154, 1668
BslFI	GGGAC	3 cut(s)	440, 1254, 1570
BslI	CCNNNNNNNGG	6 cut(s)	197, 496, 555, 684, 1573, 1632
BsmAI	GTCTC	2 cut(s)	1041, 1228
BsmBI	CGTCTC	1 cut(s)	1041
BsmFI	GGGAC	3 cut(s)	440, 1254, 1570
BsnI	GGCC	5 cut(s)	282, 1136, 1381, 1467, 1530
BsoBI	CYCGRG	2 cut(s)	421, 973
Bsp119I	TTCGAA	1 cut(s)	1506
Bsp1286I	GDGCHC	4 cut(s)	709, 773, 972, 1650
Bsp143I	GATC	7 cut(s)	642, 694, 860, 917, 1611, 1717, 1957
Bsp1720I	GCTNAGC	2 cut(s)	164, 724
BspANI	GGCC	5 cut(s)	282, 1136, 1381, 1467, 1530
BspCNI	CTCAG	7 cut(s)	101, 156, 737, 977, 1506, 1573, 1582
BspFNI	CGCG	2 cut(s)	1139, 1387
BspLI	GGNNCC	4 cut(s)	891, 900, 1637, 1743
BspMI	ACCTGC	1 cut(s)	1756
BspPI	GGATC	5 cut(s)	637, 855, 1619, 1725, 1965
BspT104I	TTCGAA	1 cut(s)	1506
BspT107I	GGYRCC	2 cut(s)	898, 1741
BsrFI	RCCGGY	2 cut(s)	895, 1153
BsrI	ACTGG	6 cut(s)	374, 490, 929, 1153, 1242, 1382
BssAI	RCCGGY	2 cut(s)	895, 1153
BssECI	CCNNGG	7 cut(s)	448, 525, 759, 1095, 1414, 1462, 1639
BssMI	GATC	7 cut(s)	642, 694, 860, 917, 1611, 1717, 1957
BssNI	GRCGYC	1 cut(s)	847
BssT1I	CCWWGG	2 cut(s)	525, 1414
Bst2UI	CCWGG	2 cut(s)	449, 950
Bst4CI	ACNGT	3 cut(s)	607, 1436, 1700
Bst6I	CTCTTC	5 cut(s)	1163, 1192, 1281, 1859, 1896
BstACI	GRCGYC	1 cut(s)	847
BstAPI	GCANNNNNTGC	1 cut(s)	1078
BstBI	TTCGAA	1 cut(s)	1506
BstC8I	GCNNGC	6 cut(s)	8, 20, 254, 721, 1557, 1726
BstDEI	CTNAG	9 cut(s)	88, 164, 380, 724, 964, 1357, 1493, 1560, 1590
BstDSI	CCRYGG	2 cut(s)	759, 1462
BstF5I	GGATG	2 cut(s)	223, 1861
BstFNI	CGCG	2 cut(s)	1139, 1387
BstHHI	GCGC	5 cut(s)	6, 15, 163, 1141, 1976
BstKTI	GATC	7 cut(s)	645, 697, 863, 920, 1614, 1720, 1960
BstMAI	GTCTC	2 cut(s)	1041, 1228
BstMBI	GATC	7 cut(s)	642, 694, 860, 917, 1611, 1717, 1957
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 12, 19, 89, 541, 725, 896, 1078, 1113
BstNI	CCWGG	2 cut(s)	449, 950
BstNSI	RCATGY	4 cut(s)	10, 719, 723, 1559
BstSCI	CCNGG	3 cut(s)	447, 948, 1667
BstSFI	CTRYAG	2 cut(s)	1432, 1539
BstUI	CGCG	2 cut(s)	1139, 1387
BstV1I	GCAGC	9 cut(s)	27, 79, 268, 319, 1119, 1125, 1128, 1335, 1428
BstV2I	GAAGAC	5 cut(s)	185, 1116, 1331, 1628, 1959
BstX2I	RGATCY	5 cut(s)	642, 694, 860, 1717, 1957
BstXI	CCANNNNNNTGG	1 cut(s)	1999
BstYI	RGATCY	5 cut(s)	642, 694, 860, 1717, 1957
BsuRI	GGCC	5 cut(s)	282, 1136, 1381, 1467, 1530
BtgI	CCRYGG	2 cut(s)	759, 1462
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	223, 1861
BtsI	GCAGTG	1 cut(s)	1012
BtsIMutI	CAGTG	2 cut(s)	1012, 1441
BveI	ACCTGC	1 cut(s)	1756
Cac8I	GCNNGC	6 cut(s)	8, 20, 254, 721, 1557, 1726
CfoI	GCGC	5 cut(s)	6, 15, 163, 1141, 1976
Cfr10I	RCCGGY	2 cut(s)	895, 1153
Cfr13I	GGNCC	2 cut(s)	1151, 1946
CpoI	CGGWCCG	1 cut(s)	1946
CseI	GACGC	1 cut(s)	606
CsiI	ACCWGGT	1 cut(s)	948
Csp6I	GTAC	3 cut(s)	384, 1579, 1594
CspAI	ACCGGT	1 cut(s)	1153
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CspI	CGGWCCG	1 cut(s)	1946
CviAII	CATG	8 cut(s)	7, 334, 716, 720, 1310, 1343, 1556, 1963
CviQI	GTAC	3 cut(s)	384, 1579, 1594
DdeI	CTNAG	9 cut(s)	88, 164, 380, 724, 964, 1357, 1493, 1560, 1590
DpnI	GATC	7 cut(s)	644, 696, 862, 919, 1613, 1719, 1959
DpnII	GATC	7 cut(s)	642, 694, 860, 917, 1611, 1717, 1957
EaeI	YGGCCR	3 cut(s)	280, 1379, 1465
Eam1104I	CTCTTC	5 cut(s)	1163, 1192, 1281, 1859, 1896
EarI	CTCTTC	5 cut(s)	1163, 1192, 1281, 1859, 1896
EciI	GGCGGA	1 cut(s)	1081
Ecl136II	GAGCTC	1 cut(s)	707
Eco130I	CCWWGG	2 cut(s)	525, 1414
Eco24I	GRGCYC	1 cut(s)	709
Eco47I	GGWCC	2 cut(s)	1151, 1946
Eco53kI	GAGCTC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	1838
Eco88I	CYCGRG	2 cut(s)	421, 973
EcoICRI	GAGCTC	1 cut(s)	707
EcoRII	CCWGG	2 cut(s)	447, 948
EcoT14I	CCWWGG	2 cut(s)	525, 1414
EcoT22I	ATGCAT	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	709
ErhI	CCWWGG	2 cut(s)	525, 1414
Esp3I	CGTCTC	1 cut(s)	1041
FaeI	CATG	8 cut(s)	10, 337, 719, 723, 1313, 1346, 1559, 1966
FaqI	GGGAC	3 cut(s)	440, 1254, 1570
FatI	CATG	8 cut(s)	6, 333, 715, 719, 1309, 1342, 1555, 1962
FauI	CCCGC	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	1218
FokI	GGATG	2 cut(s)	230, 1868
FriOI	GRGCYC	1 cut(s)	709
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	2 cut(s)	1746, 1977
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	5 cut(s)	5, 14, 162, 1140, 1975
GsaI	CCCAGC	2 cut(s)	687, 1732
GsuI	CTGGAG	1 cut(s)	391
HaeIII	GGCC	5 cut(s)	282, 1136, 1381, 1467, 1530
HapII	CCGG	4 cut(s)	365, 896, 1154, 1668
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	5 cut(s)	6, 15, 163, 1141, 1976
Hin1I	GRCGYC	1 cut(s)	847
Hin1II	CATG	8 cut(s)	10, 337, 719, 723, 1313, 1346, 1559, 1966
Hin6I	GCGC	5 cut(s)	4, 13, 161, 1139, 1974
HinP1I	GCGC	5 cut(s)	4, 13, 161, 1139, 1974
HincII	GTYRAC	3 cut(s)	519, 1364, 1546
HindII	GTYRAC	3 cut(s)	519, 1364, 1546
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	4 cut(s)	52, 137, 505, 674
HpaI	GTTAAC	1 cut(s)	1546
HpaII	CCGG	4 cut(s)	365, 896, 1154, 1668
HphI	GGTGA	7 cut(s)	187, 650, 918, 1168, 1510, 1744, 1997
Hpy166II	GTNNAC	6 cut(s)	495, 519, 1364, 1546, 1735, 1761
Hpy188III	TCNNGA	5 cut(s)	145, 314, 910, 1297, 1825
Hpy8I	GTNNAC	6 cut(s)	495, 519, 1364, 1546, 1735, 1761
Hpy99I	CGWCG	1 cut(s)	852
HpyAV	CCTTC	6 cut(s)	71, 560, 1009, 1513, 1844, 1976
HpyCH4III	ACNGT	3 cut(s)	607, 1436, 1700
HpyCH4IV	ACGT	7 cut(s)	78, 386, 395, 741, 847, 1485, 1596
HpyCH4V	TGCA	9 cut(s)	22, 95, 256, 340, 671, 719, 1072, 1601, 1790
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 12, 19, 89, 541, 725, 896, 1078, 1113
HpyF3I	CTNAG	9 cut(s)	88, 164, 380, 724, 964, 1357, 1493, 1560, 1590
HpySE526I	ACGT	7 cut(s)	78, 386, 395, 741, 847, 1485, 1596
Hsp92I	GRCGYC	1 cut(s)	847
Hsp92II	CATG	8 cut(s)	10, 337, 719, 723, 1313, 1346, 1559, 1966
HspAI	GCGC	5 cut(s)	4, 13, 161, 1139, 1974
KspAI	GTTAAC	1 cut(s)	1546
Kzo9I	GATC	7 cut(s)	642, 694, 860, 917, 1611, 1717, 1957
LmnI	GCTCC	6 cut(s)	541, 704, 712, 733, 895, 1635
Lsp1109I	GCAGC	9 cut(s)	27, 79, 268, 319, 1119, 1125, 1128, 1335, 1428
LweI	GCATC	2 cut(s)	327, 1803
MabI	ACCWGGT	1 cut(s)	948
MaeI	CTAG	2 cut(s)	1746, 1977
MaeII	ACGT	7 cut(s)	78, 386, 395, 741, 847, 1485, 1596
MaeIII	GTNAC	2 cut(s)	292, 1985
MalI	GATC	7 cut(s)	644, 696, 862, 919, 1613, 1719, 1959
MboI	GATC	7 cut(s)	642, 694, 860, 917, 1611, 1717, 1957
MfeI	CAATTG	2 cut(s)	169, 461
MflI	RGATCY	5 cut(s)	642, 694, 860, 1717, 1957
MhlI	GDGCHC	4 cut(s)	709, 773, 972, 1650
MlsI	TGGCCA	1 cut(s)	1381
MluI	ACGCGT	1 cut(s)	1385
MluNI	TGGCCA	1 cut(s)	1381
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	462, 1818
Mox20I	TGGCCA	1 cut(s)	1381
Mph1103I	ATGCAT	1 cut(s)	721
MscI	TGGCCA	1 cut(s)	1381
MseI	TTAA	7 cut(s)	75, 275, 288, 612, 744, 1421, 1545
MslI	CAYNNNNRTG	5 cut(s)	288, 332, 764, 1766, 1997
Msp20I	TGGCCA	1 cut(s)	1381
MspA1I	CMGCKG	2 cut(s)	92, 1110
MspI	CCGG	4 cut(s)	365, 896, 1154, 1668
MspR9I	CCNGG	3 cut(s)	449, 950, 1669
MunI	CAATTG	2 cut(s)	169, 461
MvaI	CCWGG	2 cut(s)	449, 950
MvnI	CGCG	2 cut(s)	1139, 1387
MwoI	GCNNNNNNNGC	9 cut(s)	10, 12, 19, 89, 541, 725, 896, 1078, 1113
NciI	CCSGG	1 cut(s)	1669
NdeI	CATATG	1 cut(s)	1218
NdeII	GATC	7 cut(s)	642, 694, 860, 917, 1611, 1717, 1957
NlaIII	CATG	8 cut(s)	10, 337, 719, 723, 1313, 1346, 1559, 1966
NlaIV	GGNNCC	4 cut(s)	891, 900, 1637, 1743
NmeAIII	GCCGAG	2 cut(s)	1120, 1470
NmuCI	GTSAC	2 cut(s)	292, 1985
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	721
NspI	RCATGY	4 cut(s)	10, 719, 723, 1559
NspV	TTCGAA	1 cut(s)	1506
OliI	CACNNNNGTG	2 cut(s)	764, 1766
PaeI	GCATGC	3 cut(s)	10, 723, 1559
PaeR7I	CTCGAG	1 cut(s)	973
PaqCI	CACCTGC	1 cut(s)	1756
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PfeI	GAWTC	3 cut(s)	52, 505, 674
PinAI	ACCGGT	1 cut(s)	1153
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	709
Psp1406I	AACGTT	3 cut(s)	78, 395, 1485
Psp6I	CCWGG	2 cut(s)	447, 948
PspFI	CCCAGC	2 cut(s)	683, 1728
PspGI	CCWGG	2 cut(s)	447, 948
PspN4I	GGNNCC	4 cut(s)	891, 900, 1637, 1743
PspPI	GGNCC	2 cut(s)	1151, 1946
PspXI	VCTCGAGB	1 cut(s)	973
PsrI	GAACNNNNNNTAC	2 cut(s)	915, 947
PsuI	RGATCY	5 cut(s)	642, 694, 860, 1717, 1957
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	3 cut(s)	385, 1580, 1595
RsaNI	GTAC	3 cut(s)	384, 1579, 1594
RseI	CAYNNNNRTG	5 cut(s)	288, 332, 764, 1766, 1997
Rsr2I	CGGWCCG	1 cut(s)	1946
RsrII	CGGWCCG	1 cut(s)	1946
SacI	GAGCTC	1 cut(s)	709
SaqAI	TTAA	7 cut(s)	75, 275, 288, 612, 744, 1421, 1545
Sau3AI	GATC	7 cut(s)	642, 694, 860, 917, 1611, 1717, 1957
Sau96I	GGNCC	2 cut(s)	1151, 1946
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	449, 950, 1669
SduI	GDGCHC	4 cut(s)	709, 773, 972, 1650
SexAI	ACCWGGT	1 cut(s)	948
SfaNI	GCATC	2 cut(s)	327, 1803
SfcI	CTRYAG	2 cut(s)	1432, 1539
Sfr274I	CTCGAG	1 cut(s)	973
SfuI	TTCGAA	1 cut(s)	1506
SinI	GGWCC	2 cut(s)	1151, 1946
SlaI	CTCGAG	1 cut(s)	973
SmiMI	CAYNNNNRTG	5 cut(s)	288, 332, 764, 1766, 1997
SmlI	CTYRAG	5 cut(s)	125, 143, 319, 655, 973
SmoI	CTYRAG	5 cut(s)	125, 143, 319, 655, 973
SphI	GCATGC	3 cut(s)	10, 723, 1559
SspMI	CTAG	2 cut(s)	1746, 1977
SstI	GAGCTC	1 cut(s)	709
StyD4I	CCNGG	3 cut(s)	447, 948, 1667
StyI	CCWWGG	2 cut(s)	525, 1414
TaaI	ACNGT	3 cut(s)	607, 1436, 1700
TaiI	ACGT	7 cut(s)	81, 389, 398, 744, 850, 1488, 1599
TaqI	TCGA	5 cut(s)	598, 974, 1481, 1506, 1773
TaqII	GACCGA	1 cut(s)	1640
TauI	GCSGC	5 cut(s)	13, 282, 824, 1113, 1139
TfiI	GAWTC	3 cut(s)	52, 505, 674
Tru1I	TTAA	7 cut(s)	75, 275, 288, 612, 744, 1421, 1545
Tru9I	TTAA	7 cut(s)	75, 275, 288, 612, 744, 1421, 1545
TscAI	CASTG	2 cut(s)	1012, 1441
TseFI	GTSAC	2 cut(s)	292, 1985
TseI	GCWGC	9 cut(s)	15, 92, 256, 307, 1107, 1113, 1141, 1323, 1441
Tsp45I	GTSAC	2 cut(s)	292, 1985
TspDTI	ATGAA	7 cut(s)	59, 464, 470, 823, 1199, 1331, 1892
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	1012, 1441
VpaK11BI	GGWCC	2 cut(s)	1151, 1946
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	2 cut(s)	416, 563
XceI	RCATGY	4 cut(s)	10, 719, 723, 1559
XcmI	CCANNNNNNNNNTGG	4 cut(s)	597, 628, 1316, 1374
XhoI	CTCGAG	1 cut(s)	973
XspI	CTAG	2 cut(s)	1746, 1977
ZraI	GACGTC	1 cut(s)	848
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.