Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009804

Physical Location & Seq

Genomic Coordinates Forward (+)

13681629 .. 13685569

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGAAACGTAGCAAGATGTCCCGCTGCAGCATGCGCATGCGGCGCAGCGTGCATTGGACATTGTTTCCTCAATGTTCTTTGATTCTTCTCCTTCTGTTTCATATTAACGTTGCCTCCTCAGCTGCACCCCCACCAGACCCCGCAGACACCCTCCTCAAGTTCAAGGACTCACTCAAGATTAGTGGTAATGCGCTGAGTAATTGGGTGAAGACCACGCCTCCGTGCGATGGCAGAAAGGCGAATTGGGATGGCGTTCTTTGTGGCGAGGGGAAGATTTGGGGCTTGCAGCTTGAAAAGATGGGGTTAAGCGGCCACATTAATGTCACAGCACTCACGCAGCTTCCAGACTTGAGAACCATAAGCATGATGCAAAATAATTTTGAGGGTTCGTTGCCGGACTGGAGGAAACTTAGTGCGTTGAAAACGTTGTATATGTCGGAAAATAAATTCTCGGGGGACATTCCCTCCGACTTGTTCCAGGGAATGAAGCAATTGAAGAAGCTTCATTTGGCAAATAACCAATTTACGGGTCAGATTCCCAAGTCGTTGACAACCTTGGATAAGCTGGTGGAGCTGACCCTTCAAGGGAACAAATTTTCAGGCAAAATACCAGATTTTCCACAAGTTCGATGGACTGTCTTTAATGCGTCCAAAAACGACTTGGAGGGTGAGATCCCAGACAGCTTGAGAAAGTTGAGTGCAGACTTCTTTGCTGGGAATAAAGATCTATGTGGAGCTCCATTACATGCATGCTCAGCTCCCTCCTCACACGTTAATACAGAGAAGCCCACGGGTGTGAGCACCGCCCTAATTGTGATTATGATTGTGATAGCAGTCATATCCATCGGTGCGGCAATTTTCTTCATCATCGTCAGACGTCGCAACAAAAGATCCGAATACTTATCATCAAATATAGAGGCTCCACCGGCGCCATCAGTCCATAACAGATCGGTATCACCAGTTCCAAAAGAACCAGACCAGGTTAGCCAAACCTCAGAGCACTCGAGTAAAGGAACGGGAGGAGGAGGAGGAAGCAGTGGAAAGAAGGCTGATAGCTTGAAGCTCTCGTTTGTCCGAGACGACAGGGAAAGGTTTGATATGCAAGACTTGCTAAAAGCCTCCGCCGAGGTGTTGGGCAGCGGCAGCTTTGGGTCTTCTTACAAGGCCGCGCTGCTGACTGGACCGGTGATGGTTGTGAAGAGGTATAAGCAGATGAACAATGTGGGAAGAGAGGAGTTCCAAGAGCATATGAGGAGAATAGGGAGACTGGGACACCCTAATTTGCTTCCACTTGTGGCTTATTACTATAAGAAAGAAGAGAAGCTCTTGATTACCGACCATGTTCCGAATGGCAGCTTGGCTGTTCGTCTTCATGGACACCAAAGCTTAGGTCAACCAAGCCTTGACTGGCCTACGCGTTTGAAGATTGTCAAAGGTGTAGCCCAAGGCTTAAAATACCTCTACAGTGAGCTGCCGAGCGTAATCACACCCCACGGCCACCTGAAATCCTCGAACGTTCTTCTCAGCAAATCCTTCGAACCCCTCATCACCGACTATGGCCTAATTCCTGTAGTTAACCAAGAGCATGCTCAGACCCTAATGGTGGTGTACAAGTCCCCTGAGTACGTTGCAACCAAGCGGATCACAAAGAAGACCGATGTATGGAGCCTCGGTGTGCTCATCTTGGAAATCCTAACCGGGAAGTTGCCAACCAACTTTTTGCAACACGGTAAGGGAAGCGAGGAGGATCTGGCGAGCTGGGTGAACTCGGTGCCTAGAGAGGAGTGGTTCACGCAGGTGTTCGATAGGGAAATGGGTGCAAACAAGAACTGCGAGGGGGAGATGCTGAAGCTCTTGAACATTGGGTTGGATTGTTGCGAAGGGGATGTGGAGAAGAGGTGGGATATGAAAGAGGCTGTGGAGAGGATTGAAGAGTTGAAAGAAAAGGAAGATGGTGGTGGTAGTGGTGGTGGCGGTCCGAATGAGGATCTCATGTCTTCTTGCGCTAGTGAAGGTGCCACGAAGATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

677

Amino Acids

74.71

Weight (kDa)

8.94

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	48 - 87	1.5e-08	Leucine rich repeat N-terminal domain
LRR_8	PF13855	139 - 199	7.6e-09	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	376 - 642	3.1e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	376 - 641	1.2e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07040 AT5G35390
fragaria_vesca	FvH4_4g06060 FvH4_5g22250
malus_domestica	MD13G1232600.v1.1 MD16G1238200.v1.1
prunus_persica	Prupe.1G064100_v2.0.a1
pyrus_communis	pycom13g20500 pycom13g20530
rosa_chinensis	RchiOBHm_Chr4g0397621
rosa_laevigata	RLG00000009423
rosa_multiflora	Rmu_co8327933.1_g000001 Rmu_sc0002729.1_g000002 Rmu_sc0005653.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342430
rosa_rugosa	Rorug03G0342300
rosa_samantha	Rh4AG079400 Rh4BG077300 Rh4CG085000 Rh4DG072400
rosa_wichuraiana	Rw4G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1786
AatII	GACGTC	1 cut(s)	880
Acc16I	TGCGCA	1 cut(s)	35
Acc36I	ACCTGC	1 cut(s)	1786
AccB1I	GGYRCC	3 cut(s)	928, 1771, 2015
AccII	CGCG	2 cut(s)	1169, 1417
AclI	AACGTT	3 cut(s)	108, 425, 1515
AclWI	GGATC	5 cut(s)	667, 885, 1649, 1755, 1995
AcoI	YGGCCR	2 cut(s)	310, 1495
AcsI	RAATTY	2 cut(s)	446, 593
AcuI	CTGAAG	1 cut(s)	1868
AcyI	GRCGYC	2 cut(s)	877, 929
AfaI	GTAC	2 cut(s)	1610, 1625
AfiI	CCNNNNNNNGG	5 cut(s)	227, 526, 585, 1603, 1662
AflIII	ACRYGT	2 cut(s)	769, 1415
AgeI	ACCGGT	1 cut(s)	1183
AjnI	CCWGG	2 cut(s)	477, 978
AjuI	GAANNNNNNNTTGG	8 cut(s)	226, 258, 491, 523, 1340, 1372, 1850, 1882
AleI	CACNNNNGTG	2 cut(s)	794, 1796
Alw21I	GWGCWC	4 cut(s)	739, 803, 1002, 1680
Alw26I	GTCTC	2 cut(s)	1071, 1258
AlwI	GGATC	5 cut(s)	667, 885, 1649, 1755, 1995
Ama87I	CYCGRG	2 cut(s)	451, 1003
AoxI	GGCC	5 cut(s)	310, 1164, 1409, 1495, 1558
ApoI	RAATTY	2 cut(s)	446, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	1375, 1407
AseI	ATTAAT	1 cut(s)	318
AsiGI	ACCGGT	1 cut(s)	1183
AspLEI	GCGC	6 cut(s)	36, 45, 193, 931, 1171, 2006
AspS9I	GGNCC	2 cut(s)	1181, 1976
AsuC2I	CCSGG	1 cut(s)	1699
AsuHPI	GGTGA	6 cut(s)	217, 680, 948, 1198, 1540, 1774
AsuII	TTCGAA	1 cut(s)	1536
AvaI	CYCGRG	2 cut(s)	451, 1003
AvaII	GGWCC	2 cut(s)	1181, 1976
BanI	GGYRCC	3 cut(s)	928, 1771, 2015
BanII	GRGCYC	1 cut(s)	739
BbsI	GAAGAC	5 cut(s)	215, 1146, 1361, 1658, 1989
Bbv12I	GWGCWC	4 cut(s)	739, 803, 1002, 1680
BbvCI	CCTCAGC	1 cut(s)	118
BccI	CCATC	9 cut(s)	221, 242, 292, 624, 851, 940, 1183, 1946, 2020
BceAI	ACGGC	1 cut(s)	1510
BcgI	CGANNNNNNTGC	2 cut(s)	1516, 1550
BciT130I	CCWGG	2 cut(s)	479, 980
BcnI	CCSGG	1 cut(s)	1699
BcoDI	GTCTC	2 cut(s)	1071, 1258
BfaI	CTAG	2 cut(s)	1776, 2007
BfmI	CTRYAG	3 cut(s)	25, 1462, 1569
BfoI	RGCGCY	1 cut(s)	932
BfuAI	ACCTGC	1 cut(s)	1786
BglII	AGATCT	1 cut(s)	724
BlpI	GCTNAGC	1 cut(s)	754
Bme1390I	CCNGG	3 cut(s)	479, 980, 1699
Bme18I	GGWCC	2 cut(s)	1181, 1976
BmeT110I	CYCGRG	2 cut(s)	451, 1003
BmgT120I	GGNCC	2 cut(s)	1181, 1976
BmiI	GGNNCC	5 cut(s)	921, 930, 1667, 1773, 2017
BmrFI	CCNGG	3 cut(s)	479, 980, 1699
BmrI	ACTGGG	1 cut(s)	1277
BmsI	GCATC	2 cut(s)	357, 1833
BmuI	ACTGGG	1 cut(s)	1277
BpiI	GAAGAC	5 cut(s)	215, 1146, 1361, 1658, 1989
BpmI	CTGGAG	1 cut(s)	421
Bpu10I	CCTNAGC	2 cut(s)	118, 1387
Bpu1102I	GCTNAGC	1 cut(s)	754
Bpu14I	TTCGAA	1 cut(s)	1536
BpuEI	CTTGAG	4 cut(s)	140, 158, 370, 706
BpuMI	CCSGG	1 cut(s)	1699
BsaBI	GATNNNNATC	1 cut(s)	952
BsaHI	GRCGYC	2 cut(s)	877, 929
BsaJI	CCNNGG	7 cut(s)	478, 555, 789, 1125, 1444, 1492, 1669
BsaWI	WCCGGW	1 cut(s)	1183
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 526, 585, 1603, 1662
Bse118I	RCCGGY	2 cut(s)	925, 1183
Bse1I	ACTGG	5 cut(s)	404, 959, 1183, 1272, 1412
Bse8I	GATNNNNATC	1 cut(s)	952
BseBI	CCWGG	2 cut(s)	479, 980
BseDI	CCNNGG	7 cut(s)	478, 555, 789, 1125, 1444, 1492, 1669
BseGI	GGATG	2 cut(s)	253, 1891
BseJI	GATNNNNATC	1 cut(s)	952
BseLI	CCNNNNNNNGG	5 cut(s)	227, 526, 585, 1603, 1662
BseMII	CTCAG	7 cut(s)	132, 185, 768, 1008, 1537, 1604, 1611
BseNI	ACTGG	5 cut(s)	404, 959, 1183, 1272, 1412
BseYI	CCCAGC	2 cut(s)	713, 1758
BsgI	GTGCAG	2 cut(s)	108, 720
Bsh1236I	CGCG	2 cut(s)	1169, 1417
BshFI	GGCC	5 cut(s)	312, 1166, 1411, 1497, 1560
BshNI	GGYRCC	3 cut(s)	928, 1771, 2015
BshTI	ACCGGT	1 cut(s)	1183
BsiHKAI	GWGCWC	4 cut(s)	739, 803, 1002, 1680
BsiHKCI	CYCGRG	2 cut(s)	451, 1003
BsiSI	CCGG	4 cut(s)	395, 926, 1184, 1698
BslFI	GGGAC	4 cut(s)	4, 470, 1284, 1600
BslI	CCNNNNNNNGG	5 cut(s)	227, 526, 585, 1603, 1662
BsmAI	GTCTC	2 cut(s)	1071, 1258
BsmBI	CGTCTC	1 cut(s)	1071
BsmFI	GGGAC	4 cut(s)	4, 470, 1284, 1600
BsnI	GGCC	5 cut(s)	312, 1166, 1411, 1497, 1560
BsoBI	CYCGRG	2 cut(s)	451, 1003
Bsp119I	TTCGAA	1 cut(s)	1536
Bsp1286I	GDGCHC	4 cut(s)	739, 803, 1002, 1680
Bsp1407I	TGTACA	1 cut(s)	1608
Bsp143I	GATC	7 cut(s)	672, 724, 890, 947, 1641, 1747, 1987
Bsp1720I	GCTNAGC	1 cut(s)	754
BspANI	GGCC	5 cut(s)	312, 1166, 1411, 1497, 1560
BspCNI	CTCAG	7 cut(s)	131, 186, 767, 1007, 1536, 1603, 1612
BspFNI	CGCG	2 cut(s)	1169, 1417
BspLI	GGNNCC	5 cut(s)	921, 930, 1667, 1773, 2017
BspMAI	CTGCAG	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	1786
BspPI	GGATC	5 cut(s)	667, 885, 1649, 1755, 1995
BspT104I	TTCGAA	1 cut(s)	1536
BspT107I	GGYRCC	3 cut(s)	928, 1771, 2015
BsrFI	RCCGGY	2 cut(s)	925, 1183
BsrGI	TGTACA	1 cut(s)	1608
BsrI	ACTGG	5 cut(s)	404, 959, 1183, 1272, 1412
BssAI	RCCGGY	2 cut(s)	925, 1183
BssECI	CCNNGG	7 cut(s)	478, 555, 789, 1125, 1444, 1492, 1669
BssMI	GATC	7 cut(s)	672, 724, 890, 947, 1641, 1747, 1987
BssNI	GRCGYC	2 cut(s)	877, 929
BssT1I	CCWWGG	2 cut(s)	555, 1444
Bst2UI	CCWGG	2 cut(s)	479, 980
Bst4CI	ACNGT	3 cut(s)	637, 1466, 1730
Bst6I	CTCTTC	5 cut(s)	1193, 1222, 1311, 1889, 1926
BstACI	GRCGYC	2 cut(s)	877, 929
BstAPI	GCANNNNNTGC	1 cut(s)	1108
BstAUI	TGTACA	1 cut(s)	1608
BstBI	TTCGAA	1 cut(s)	1536
BstC8I	GCNNGC	7 cut(s)	32, 38, 50, 284, 751, 1587, 1756
BstDEI	CTNAG	9 cut(s)	118, 194, 410, 754, 994, 1387, 1523, 1590, 1620
BstDSI	CCRYGG	2 cut(s)	789, 1492
BstF5I	GGATG	2 cut(s)	253, 1891
BstFNI	CGCG	2 cut(s)	1169, 1417
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	6 cut(s)	36, 45, 193, 931, 1171, 2006
BstKTI	GATC	7 cut(s)	675, 727, 893, 950, 1644, 1750, 1990
BstMAI	GTCTC	2 cut(s)	1071, 1258
BstMBI	GATC	7 cut(s)	672, 724, 890, 947, 1641, 1747, 1987
BstNI	CCWGG	2 cut(s)	479, 980
BstNSI	RCATGY	5 cut(s)	34, 40, 749, 753, 1589
BstSCI	CCNGG	3 cut(s)	477, 978, 1697
BstSFI	CTRYAG	3 cut(s)	25, 1462, 1569
BstUI	CGCG	2 cut(s)	1169, 1417
BstV2I	GAAGAC	5 cut(s)	215, 1146, 1361, 1658, 1989
BstX2I	RGATCY	5 cut(s)	672, 724, 890, 1747, 1987
BstXI	CCANNNNNNTGG	1 cut(s)	2026
BstYI	RGATCY	5 cut(s)	672, 724, 890, 1747, 1987
BsuRI	GGCC	5 cut(s)	312, 1166, 1411, 1497, 1560
BtgI	CCRYGG	2 cut(s)	789, 1492
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	253, 1891
BtsI	GCAGTG	1 cut(s)	1042
BtsIMutI	CAGTG	2 cut(s)	1042, 1471
BveI	ACCTGC	1 cut(s)	1786
Cac8I	GCNNGC	7 cut(s)	32, 38, 50, 284, 751, 1587, 1756
CfoI	GCGC	6 cut(s)	36, 45, 193, 931, 1171, 2006
Cfr10I	RCCGGY	2 cut(s)	925, 1183
Cfr13I	GGNCC	2 cut(s)	1181, 1976
CpoI	CGGWCCG	1 cut(s)	1976
CseI	GACGC	1 cut(s)	636
CsiI	ACCWGGT	1 cut(s)	978
Csp6I	GTAC	2 cut(s)	1609, 1624
CspAI	ACCGGT	1 cut(s)	1183
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CspI	CGGWCCG	1 cut(s)	1976
CviAII	CATG	9 cut(s)	31, 37, 364, 746, 750, 1340, 1373, 1586, 1993
CviQI	GTAC	2 cut(s)	1609, 1624
DdeI	CTNAG	9 cut(s)	118, 194, 410, 754, 994, 1387, 1523, 1590, 1620
DinI	GGCGCC	1 cut(s)	930
DpnI	GATC	7 cut(s)	674, 726, 892, 949, 1643, 1749, 1989
DpnII	GATC	7 cut(s)	672, 724, 890, 947, 1641, 1747, 1987
EaeI	YGGCCR	2 cut(s)	310, 1495
Eam1104I	CTCTTC	5 cut(s)	1193, 1222, 1311, 1889, 1926
EarI	CTCTTC	5 cut(s)	1193, 1222, 1311, 1889, 1926
EciI	GGCGGA	1 cut(s)	1111
Ecl136II	GAGCTC	1 cut(s)	737
Eco130I	CCWWGG	2 cut(s)	555, 1444
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	2 cut(s)	1181, 1976
Eco53kI	GAGCTC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	1868
Eco88I	CYCGRG	2 cut(s)	451, 1003
EcoICRI	GAGCTC	1 cut(s)	737
EcoRII	CCWGG	2 cut(s)	477, 978
EcoT14I	CCWWGG	2 cut(s)	555, 1444
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	739
EgeI	GGCGCC	1 cut(s)	930
EheI	GGCGCC	1 cut(s)	930
ErhI	CCWWGG	2 cut(s)	555, 1444
Esp3I	CGTCTC	1 cut(s)	1071
FaeI	CATG	9 cut(s)	34, 40, 367, 749, 753, 1343, 1376, 1589, 1996
FaqI	GGGAC	4 cut(s)	4, 470, 1284, 1600
FatI	CATG	9 cut(s)	30, 36, 363, 745, 749, 1339, 1372, 1585, 1992
FauI	CCCGC	2 cut(s)	29, 148
FauNDI	CATATG	1 cut(s)	1248
FokI	GGATG	2 cut(s)	260, 1898
FriOI	GRGCYC	1 cut(s)	739
FspAI	RTGCGCAY	1 cut(s)	35
FspBI	CTAG	2 cut(s)	1776, 2007
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	6 cut(s)	35, 44, 192, 930, 1170, 2005
GsaI	CCCAGC	2 cut(s)	717, 1762
GsuI	CTGGAG	1 cut(s)	421
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	5 cut(s)	312, 1166, 1411, 1497, 1560
HapII	CCGG	4 cut(s)	395, 926, 1184, 1698
HgaI	GACGC	1 cut(s)	636
HhaI	GCGC	6 cut(s)	36, 45, 193, 931, 1171, 2006
Hin1I	GRCGYC	2 cut(s)	877, 929
Hin1II	CATG	9 cut(s)	34, 40, 367, 749, 753, 1343, 1376, 1589, 1996
Hin6I	GCGC	6 cut(s)	34, 43, 191, 929, 1169, 2004
HinP1I	GCGC	6 cut(s)	34, 43, 191, 929, 1169, 2004
HincII	GTYRAC	3 cut(s)	549, 1394, 1576
HindII	GTYRAC	3 cut(s)	549, 1394, 1576
HindIII	AAGCTT	2 cut(s)	500, 1384
HinfI	GANTC	3 cut(s)	82, 167, 535
HpaI	GTTAAC	1 cut(s)	1576
HpaII	CCGG	4 cut(s)	395, 926, 1184, 1698
HphI	GGTGA	6 cut(s)	217, 680, 948, 1198, 1540, 1774
Hpy166II	GTNNAC	6 cut(s)	549, 1394, 1576, 1609, 1765, 1791
Hpy188III	TCNNGA	4 cut(s)	175, 344, 1327, 1855
Hpy8I	GTNNAC	6 cut(s)	549, 1394, 1576, 1609, 1765, 1791
Hpy99I	CGWCG	1 cut(s)	882
HpyAV	CCTTC	6 cut(s)	101, 590, 1039, 1543, 1874, 2006
HpyCH4III	ACNGT	3 cut(s)	637, 1466, 1730
HpyCH4IV	ACGT	7 cut(s)	7, 108, 425, 771, 877, 1515, 1626
HpyF3I	CTNAG	9 cut(s)	118, 194, 410, 754, 994, 1387, 1523, 1590, 1620
HpySE526I	ACGT	7 cut(s)	7, 108, 425, 771, 877, 1515, 1626
Hsp92I	GRCGYC	2 cut(s)	877, 929
Hsp92II	CATG	9 cut(s)	34, 40, 367, 749, 753, 1343, 1376, 1589, 1996
HspAI	GCGC	6 cut(s)	34, 43, 191, 929, 1169, 2004
KasI	GGCGCC	1 cut(s)	928
KspAI	GTTAAC	1 cut(s)	1576
Kzo9I	GATC	7 cut(s)	672, 724, 890, 947, 1641, 1747, 1987
LmnI	GCTCC	6 cut(s)	571, 734, 742, 763, 925, 1665
LweI	GCATC	2 cut(s)	357, 1833
MabI	ACCWGGT	1 cut(s)	978
MaeI	CTAG	2 cut(s)	1776, 2007
MaeII	ACGT	7 cut(s)	7, 108, 425, 771, 877, 1515, 1626
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	7 cut(s)	674, 726, 892, 949, 1643, 1749, 1989
MboI	GATC	7 cut(s)	672, 724, 890, 947, 1641, 1747, 1987
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	5 cut(s)	672, 724, 890, 1747, 1987
MhlI	GDGCHC	4 cut(s)	739, 803, 1002, 1680
MluI	ACGCGT	1 cut(s)	1415
Mly113I	GGCGCC	1 cut(s)	929
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	3 cut(s)	417, 492, 1848
Mph1103I	ATGCAT	1 cut(s)	751
MseI	TTAA	7 cut(s)	105, 305, 318, 642, 774, 1451, 1575
MslI	CAYNNNNRTG	6 cut(s)	35, 318, 362, 794, 1796, 2024
MspA1I	CMGCKG	3 cut(s)	24, 122, 1140
MspI	CCGG	4 cut(s)	395, 926, 1184, 1698
MspR9I	CCNGG	3 cut(s)	479, 980, 1699
MunI	CAATTG	1 cut(s)	491
MvaI	CCWGG	2 cut(s)	479, 980
MvnI	CGCG	2 cut(s)	1169, 1417
NarI	GGCGCC	1 cut(s)	929
NciI	CCSGG	1 cut(s)	1699
NdeI	CATATG	1 cut(s)	1248
NdeII	GATC	7 cut(s)	672, 724, 890, 947, 1641, 1747, 1987
NlaIII	CATG	9 cut(s)	34, 40, 367, 749, 753, 1343, 1376, 1589, 1996
NlaIV	GGNNCC	5 cut(s)	921, 930, 1667, 1773, 2017
NmeAIII	GCCGAG	2 cut(s)	1150, 1500
NmuCI	GTSAC	1 cut(s)	322
NsbI	TGCGCA	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	5 cut(s)	34, 40, 749, 753, 1589
NspV	TTCGAA	1 cut(s)	1536
OliI	CACNNNNGTG	2 cut(s)	794, 1796
PaeI	GCATGC	4 cut(s)	34, 40, 753, 1589
PaeR7I	CTCGAG	1 cut(s)	1003
PaqCI	CACCTGC	1 cut(s)	1786
PfeI	GAWTC	2 cut(s)	82, 535
PinAI	ACCGGT	1 cut(s)	1183
PleI	GAGTC	1 cut(s)	161
PluTI	GGCGCC	1 cut(s)	932
PpsI	GAGTC	1 cut(s)	161
PshBI	ATTAAT	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	739
Psp1406I	AACGTT	3 cut(s)	108, 425, 1515
Psp6I	CCWGG	2 cut(s)	477, 978
PspFI	CCCAGC	2 cut(s)	713, 1758
PspGI	CCWGG	2 cut(s)	477, 978
PspN4I	GGNNCC	5 cut(s)	921, 930, 1667, 1773, 2017
PspPI	GGNCC	2 cut(s)	1181, 1976
PspXI	VCTCGAGB	1 cut(s)	1003
PsrI	GAACNNNNNNTAC	2 cut(s)	945, 977
PstI	CTGCAG	1 cut(s)	29
PsuI	RGATCY	5 cut(s)	672, 724, 890, 1747, 1987
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	1610, 1625
RsaNI	GTAC	2 cut(s)	1609, 1624
RseI	CAYNNNNRTG	6 cut(s)	35, 318, 362, 794, 1796, 2024
Rsr2I	CGGWCCG	1 cut(s)	1976
RsrII	CGGWCCG	1 cut(s)	1976
SacI	GAGCTC	1 cut(s)	739
SaqAI	TTAA	7 cut(s)	105, 305, 318, 642, 774, 1451, 1575
Sau3AI	GATC	7 cut(s)	672, 724, 890, 947, 1641, 1747, 1987
Sau96I	GGNCC	2 cut(s)	1181, 1976
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	479, 980, 1699
SduI	GDGCHC	4 cut(s)	739, 803, 1002, 1680
SexAI	ACCWGGT	1 cut(s)	978
SfaNI	GCATC	2 cut(s)	357, 1833
SfcI	CTRYAG	3 cut(s)	25, 1462, 1569
SfoI	GGCGCC	1 cut(s)	930
Sfr274I	CTCGAG	1 cut(s)	1003
SfuI	TTCGAA	1 cut(s)	1536
SgrAI	CRCCGGYG	1 cut(s)	925
SinI	GGWCC	2 cut(s)	1181, 1976
SlaI	CTCGAG	1 cut(s)	1003
SmiMI	CAYNNNNRTG	6 cut(s)	35, 318, 362, 794, 1796, 2024
SmlI	CTYRAG	5 cut(s)	155, 173, 349, 685, 1003
SmoI	CTYRAG	5 cut(s)	155, 173, 349, 685, 1003
SphI	GCATGC	4 cut(s)	34, 40, 753, 1589
SspDI	GGCGCC	1 cut(s)	928
SspMI	CTAG	2 cut(s)	1776, 2007
SstI	GAGCTC	1 cut(s)	739
StyD4I	CCNGG	3 cut(s)	477, 978, 1697
StyI	CCWWGG	2 cut(s)	555, 1444
TaaI	ACNGT	3 cut(s)	637, 1466, 1730
TaiI	ACGT	7 cut(s)	10, 111, 428, 774, 880, 1518, 1629
TaqI	TCGA	5 cut(s)	628, 1004, 1511, 1536, 1803
TaqII	GACCGA	1 cut(s)	1670
TatI	WGTACW	1 cut(s)	1608
TauI	GCSGC	5 cut(s)	43, 312, 854, 1143, 1169
TfiI	GAWTC	2 cut(s)	82, 535
Tru1I	TTAA	7 cut(s)	105, 305, 318, 642, 774, 1451, 1575
Tru9I	TTAA	7 cut(s)	105, 305, 318, 642, 774, 1451, 1575
TscAI	CASTG	2 cut(s)	1042, 1471
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	8 cut(s)	17, 89, 494, 500, 853, 1229, 1361, 1922
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	2 cut(s)	1042, 1471
VpaK11BI	GGWCC	2 cut(s)	1181, 1976
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	2 cut(s)	446, 593
XceI	RCATGY	5 cut(s)	34, 40, 749, 753, 1589
XcmI	CCANNNNNNNNNTGG	4 cut(s)	627, 658, 1346, 1404
XhoI	CTCGAG	1 cut(s)	1003
XspI	CTAG	2 cut(s)	1776, 2007
ZraI	GACGTC	1 cut(s)	878
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.