Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007929

Physical Location & Seq

Genomic Coordinates Forward (+)

14846225 .. 14854407

Gene Structure 8183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g23510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAATCGCCACCACGACCCCAATCCCTTTGAAGAAGAAGAGGTCGAGGTCAATCCCTTCTCGAATGGGAAGTCACGGATTCCACCTCTATCATCTGAACCTCTTGGTTTTGGGCAGAAACATGATGCAACAGTTGATATACCACTGGACACAATGAATGATTCTAATCAAAAGGCAAAAGAGCTTGCAGCTTGGGAAGCAGATCTCAAGAGAAGAGAAAAGGATATCAAACGGAGAGAGGATTCTGTTGCAAAAGCTGGTGTCCCCGATGATGGAAAAAATTGGCCTCCATTCTTTCCAATTATTCACCATGATATTGCCAATGAAATACCCGTACATGCTCAGAGGCTACAATATATGGCTTTTGCAAGTTGGTTAGGTATAGTTCTTTGCCTAGTGTTCAATGTAATTGCTGTTATCGTCTGTTGGGTCCGAGGTGGAGGTTCTAAGATATTTTTCCTTGCAATCATCTATGCTCTACTTGGAGTACCACTCTCATATGTGCTGTGGTACAGGCCTCTCTATCGGGCAATGAGGACAGATAGTGCCTTGAAGTTTGGTTGGTTCTTCATGTTCTACATGCTCCATATTGGGTTTTGCATTATCGCGGCTATAGCTCCACCAATTGTCTTTCAAGGAAAATCTCTGACGGGCATTCTTGCTGCAATTGATGTCTTTTCTGACCATGTGATAGTAGGGATATTCTACTTAATTGGTTTCGCCTTGTTTTGCTTAGAGTCACTTCTAAGCTTTTGGGTACTCCAGAAAATTTACGTGTATTTCAGGGGAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

266

Amino Acids

30.15

Weight (kDa)

7.08

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	86 - 256	2.2e-61	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32050
fragaria_vesca	FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510
malus_domestica	MD00G1068600.v1.1 MD06G1023700.v1.1
prunus_persica	Prupe.5G024700_v2.0.a1 Prupe.5G024700_v2.0.a1
pyrus_communis	pycom06g01930 pycom16g25310
rosa_chinensis	RchiOBHm_Chr7g0212781
rosa_laevigata	RLG00000002869
rosa_multiflora	Rmu_sc0000394.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246560
rosa_rugosa	Rorug07G0136600 Rorug07G0136700
rosa_samantha	Rh7AG268200 Rh7BG263600 Rh7CG287200 Rh7DG276300
rosa_wichuraiana	Rw7G023170 Rw7G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	608
AciI	CCGC	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	768
AfaI	GTAC	4 cut(s)	336, 489, 512, 759
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	4 cut(s)	32, 403, 553, 635
AluBI	AGCT	5 cut(s)	184, 191, 257, 617, 750
AluI	AGCT	5 cut(s)	184, 191, 257, 617, 750
AoxI	GGCC	2 cut(s)	284, 515
ApeKI	GCWGC	2 cut(s)	188, 662
ApoI	RAATTY	1 cut(s)	768
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	200, 649
BccI	CCATC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	612
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	3 cut(s)	189, 609, 663
BlsI	GCNGC	3 cut(s)	190, 610, 664
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	431
BmsI	GCATC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	477, 509
BpmI	CTGGAG	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	775
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	200, 649
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	2 cut(s)	286, 517
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	654
BsnI	GGCC	2 cut(s)	286, 517
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	2 cut(s)	286, 517
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	2 cut(s)	33, 208
BstBAI	YACGTR	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	342, 447, 733, 746
BstFNI	CGCG	1 cut(s)	608
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 614
BstNSI	RCATGY	2 cut(s)	341, 583
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	2 cut(s)	200, 649
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	286, 517
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	4 cut(s)	335, 488, 511, 758
CviAII	CATG	6 cut(s)	122, 311, 338, 571, 580, 686
CviQI	GTAC	4 cut(s)	335, 488, 511, 758
DdeI	CTNAG	4 cut(s)	342, 447, 733, 746
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	33, 208
EarI	CTCTTC	2 cut(s)	33, 208
Eco147I	AGGCCT	1 cut(s)	517
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	430
EcoRV	GATATC	1 cut(s)	226
FaeI	CATG	6 cut(s)	125, 314, 341, 574, 583, 689
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	6 cut(s)	121, 310, 337, 570, 579, 685
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	3 cut(s)	189, 609, 663
Fsp4HI	GCNGC	3 cut(s)	189, 609, 663
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	3 cut(s)	189, 609, 663
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	2 cut(s)	286, 517
Hin1II	CATG	6 cut(s)	125, 314, 341, 574, 583, 689
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	5 cut(s)	4, 79, 161, 242, 737
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	5 cut(s)	97, 345, 434, 648, 682
Hpy188III	TCNNGA	3 cut(s)	61, 208, 763
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	7 cut(s)	128, 188, 251, 368, 464, 600, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 614
HpyF3I	CTNAG	4 cut(s)	342, 447, 733, 746
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	6 cut(s)	125, 314, 341, 574, 583, 689
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	588, 622
LpnPI	CCDG	5 cut(s)	131, 243, 499, 769, 776
Lsp1109I	GCAGC	2 cut(s)	200, 649
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	2 cut(s)	72, 738
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	5 cut(s)	44, 47, 50, 225, 559
MfeI	CAATTG	2 cut(s)	624, 666
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	7 cut(s)	280, 300, 408, 624, 666, 711, 768
MlyI	GAGTC	1 cut(s)	746
MseI	TTAA	1 cut(s)	710
MunI	CAATTG	2 cut(s)	624, 666
Mva1269I	GAATGC	1 cut(s)	654
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	2 cut(s)	197, 614
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	6 cut(s)	125, 314, 341, 574, 583, 689
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	2 cut(s)	72, 738
NspI	RCATGY	2 cut(s)	341, 583
PceI	AGGCCT	1 cut(s)	517
PctI	GAATGC	1 cut(s)	654
PfeI	GAWTC	4 cut(s)	4, 79, 161, 242
PkrI	GCNGC	3 cut(s)	190, 610, 664
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
Ppu21I	YACGTR	1 cut(s)	775
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	4 cut(s)	336, 489, 512, 759
RsaNI	GTAC	4 cut(s)	335, 488, 511, 758
SaqAI	TTAA	1 cut(s)	710
SatI	GCNGC	3 cut(s)	189, 609, 663
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	746
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	7 cut(s)	280, 300, 408, 624, 666, 711, 768
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	1 cut(s)	608
SspMI	CTAG	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	2 cut(s)	45, 62
TasI	AATT	7 cut(s)	280, 300, 408, 624, 666, 711, 768
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	4 cut(s)	4, 79, 161, 242
Tru1I	TTAA	1 cut(s)	710
Tru9I	TTAA	1 cut(s)	710
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	2 cut(s)	72, 738
TseI	GCWGC	2 cut(s)	188, 662
Tsp45I	GTSAC	2 cut(s)	72, 738
TspDTI	ATGAA	4 cut(s)	17, 170, 339, 559
TspGWI	ACGGA	2 cut(s)	91, 247
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	1 cut(s)	768
XceI	RCATGY	2 cut(s)	341, 583
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.