Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007929

Physical Location & Seq

Genomic Coordinates Forward (+)

24078069 .. 24086915

Gene Structure 8847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAATCGGCACCACGACCCCAATCCCTTTGAAGAAGAGGTCGAGGTCAATCCCTTTTCGAATGGGAAGTCACGGATTCCACCATTGGCATCTGAACCTCTTGGTTTTGGGCAGAAACATGATGCAACAGTTGATATACCATTGGACACAATGAGTGATTCTAAGCAAAAGGCAAAAGAGCTTGCAACCTGGGAAGCAGATCTCAAGAGAAGAGAAAAGGATATCAAACGAAGAGAGGATTCTGTTGCAAAAGCTGGTGTCCCCGATGATGGGAAAAATTGGCCTCCATTCTTTCCGATTATTCACCATGATATTGCCAATGAAATTCCTGTACATGCTCAAAGACTACAGTATATGGCTTTTGCAAGTTGGTTAGGTATAGTTCTTTGCCTAGTGTTCAATGTAATTGCTGTTATCATCTGTTGGGTTAGAGGAGGAGGTTCCAAAATATTTTTCCTTGCAGTCATCTATGCTCTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGGCCCCTCTATCGGGCAATGAGGACAGATAGTGCCTTGAAGTTTGGTTGGTTTTTCCTGTTCTACATGGTATGTACTGATACAATATTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

201

Amino Acids

23.08

Weight (kDa)

7.01

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	92 - 194	3.3e-40	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32050
fragaria_vesca	FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510
malus_domestica	MD00G1068600.v1.1 MD06G1023700.v1.1
prunus_persica	Prupe.5G024700_v2.0.a1 Prupe.5G024700_v2.0.a1
pyrus_communis	pycom06g01930 pycom16g25310
rosa_chinensis	RchiOBHm_Chr7g0212781
rosa_laevigata	RLG00000002869
rosa_multiflora	Rmu_sc0000394.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246560
rosa_rugosa	Rorug07G0136600 Rorug07G0136700
rosa_samantha	Rh7AG268200 Rh7BG263600 Rh7CG287200 Rh7DG276300
rosa_wichuraiana	Rw7G023170 Rw7G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	3 cut(s)	333, 509, 586
AfiI	CCNNNNNNNGG	4 cut(s)	269, 270, 522, 523
AgsI	TTSAA	3 cut(s)	32, 400, 550
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	2 cut(s)	181, 254
AluI	AGCT	2 cut(s)	181, 254
AoxI	GGCC	2 cut(s)	281, 512
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	296
AsuII	TTCGAA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	9
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	190
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	3 cut(s)	11, 442, 515
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	98, 112
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 270, 522, 523
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	269, 270, 522, 523
BseMI	GCAATG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	447, 450
BshFI	GGCC	2 cut(s)	283, 514
BshNI	GGYRCC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	4 cut(s)	269, 270, 522, 523
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	283, 514
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	199
BspANI	GGCC	2 cut(s)	283, 514
BspLI	GGNNCC	3 cut(s)	11, 442, 515
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	130, 351
Bst6I	CTCTTC	3 cut(s)	30, 205, 226
BstAUI	TGTACA	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	283, 514
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	513
Csp6I	GTAC	3 cut(s)	332, 508, 585
CviAII	CATG	4 cut(s)	119, 308, 335, 577
CviJI	RGCY	5 cut(s)	181, 254, 283, 359, 514
CviKI_1	RGCY	5 cut(s)	181, 254, 283, 359, 514
CviQI	GTAC	3 cut(s)	332, 508, 585
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	30, 205, 226
EarI	CTCTTC	3 cut(s)	30, 205, 226
Eco32I	GATATC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	4 cut(s)	122, 311, 338, 580
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	4 cut(s)	118, 307, 334, 576
FauNDI	CATATG	1 cut(s)	496
FspBI	CTAG	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	283, 514
Hin1II	CATG	4 cut(s)	122, 311, 338, 580
HinfI	GANTC	4 cut(s)	4, 76, 158, 239
HphI	GGTGA	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	94, 297
Hpy188III	TCNNGA	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	130, 351
HpyCH4V	TGCA	5 cut(s)	125, 185, 248, 365, 461
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	122, 311, 338, 580
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	6 cut(s)	175, 202, 240, 342, 496, 581
LweI	GCATC	2 cut(s)	98, 112
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	44, 47, 222, 243
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	3 cut(s)	277, 324, 405
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	4 cut(s)	122, 311, 338, 580
NlaIV	GGNNCC	3 cut(s)	11, 442, 515
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	59
PfeI	GAWTC	4 cut(s)	4, 76, 158, 239
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	3 cut(s)	11, 442, 515
PspPI	GGNCC	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	3 cut(s)	333, 509, 586
RsaNI	GTAC	3 cut(s)	332, 508, 585
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	513
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	8 cut(s)	42, 48, 100, 183, 191, 256, 379, 442
SfaNI	GCATC	2 cut(s)	98, 112
SfcI	CTRYAG	1 cut(s)	347
SfuI	TTCGAA	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	277, 324, 405
SspI	AATATT	2 cut(s)	450, 597
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	130, 351
TaqI	TCGA	2 cut(s)	42, 59
TasI	AATT	3 cut(s)	277, 324, 405
TatI	WGTACW	2 cut(s)	331, 584
TfiI	GAWTC	4 cut(s)	4, 76, 158, 239
TseFI	GTSAC	1 cut(s)	69
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	17, 336
TspGWI	ACGGA	1 cut(s)	88
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.