MD00G1068600.v1.1

Secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0007929
Physical Location & Seq
Reverse (-)
13450056 .. 13458149
8094 bp
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UTR
Exon/CDS
Intron
MD00G1068600.v1.1.491

Sequence Viewer

Length: 822 bp
ATGAATCGCCACCACGACCCCAACCCGTTTGACGAAGAAGTGGTCGAGGTCGAGGTCAATCCCTTTTCGAATGGTGCTGCTGCTCCTAAGTCAAAGTCACGAGTTCCACCAGTGTCATCTGACCATCTGGGTTTTGGGCAGAAACACGATGCCACAGTCGATATTCCGTTGGATACAATGAATGATTCTAAGCAAAAGGCAAAAGAGCTTGCAACTTGGGAAGCAGATCTCAAGAAGAGAGAAAAGGATATTAAACGTAGAGAAGATTCTGTTGCAAAAGCTGGTGCCCCTGTTGATGATAGAAATTGGCCTCCTTTTTTTCCAATTATTCACCATGATATAGCTAATGAAATACCAATACATGCTCAAAAGCTACAGTATCTGGCTTTTGCAAGTTGGCTAGGCATAGTTCTTTGCCTATTTTTCAATGTGATTGCGATTATCGTCTGTTGGATTAGAGGCGGAGGTGTTAAAATATTTTTGCTTGCGACGATCTATGCTCTAATGGGATGCCCTCTTTCATATGTTCTTTGGTACAGGCCTCTCTATCGTGCTATGAGGACTGATAGTGCCCTGAAGTTTGGTTGGTTTTTCTTGTTCTACATGCTCCACATTGGGTTTTGTATTTTTGCGGCGATAGCTCCTCCAATTGTCTTTAATGGGAAATCATTGACGGGCATTCTTTCGGCAATTGATGTTTTCTCTGACCATGTGGTGGTAGGGATATTCTACTTAACTGGGTTTGCCTTGTTTTGCTTGGAGTCTCTTCTAAGCTTATGGGTACTTCAGAAAGTATACATGTATTTCAGGGGGAACAAGTGA

Protein Analysis

274

Amino Acids

30.93

Weight (kDa)

8.21

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 101 - 271 7.2e-60 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 715
AccI GTMKAC 1 cut(s) 795
AciI CCGC 2 cut(s) 462, 632
AcuI CTGAAG 2 cut(s) 596, 770
AfaI GTAC 2 cut(s) 536, 783
AfiI CCNNNNNNNGG 1 cut(s) 715
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 1 cut(s) 427
AluBI AGCT 6 cut(s) 208, 281, 344, 373, 641, 774
AluI AGCT 6 cut(s) 208, 281, 344, 373, 641, 774
Alw26I GTCTC 1 cut(s) 768
AlwNI CAGNNNCTG 1 cut(s) 382
AoxI GGCC 2 cut(s) 308, 539
ApeKI GCWGC 2 cut(s) 77, 80
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AsuHPI GGTGA 1 cut(s) 323
AsuII TTCGAA 1 cut(s) 68
BaeGI GKGCMC 2 cut(s) 289, 574
BanI GGYRCC 1 cut(s) 284
BauI CACGAG 1 cut(s) 99
BbvI GCAGC 2 cut(s) 64, 67
BccI CCATC 1 cut(s) 132
BciVI GTATCC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 768
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 374
BfuI GTATCC 1 cut(s) 166
BglII AGATCT 1 cut(s) 226
BisI GCNGC 3 cut(s) 78, 81, 633
BlsI GCNGC 3 cut(s) 79, 82, 634
BmiI GGNNCC 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 2 cut(s) 139, 500
BmuI ACTGGG 1 cut(s) 747
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 715
Bse1I ACTGG 2 cut(s) 110, 742
BseGI GGATG 1 cut(s) 515
BseLI CCNNNNNNNGG 1 cut(s) 715
BseNI ACTGG 2 cut(s) 110, 742
BseRI GAGGAG 1 cut(s) 633
BseSI GKGCMC 2 cut(s) 289, 574
BseXI GCAGC 2 cut(s) 64, 67
BshFI GGCC 2 cut(s) 310, 541
BshNI GGYRCC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 715
BsmAI GTCTC 1 cut(s) 768
BsmI GAATGC 1 cut(s) 678
BsnI GGCC 2 cut(s) 310, 541
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 289, 574
Bsp143I GATC 2 cut(s) 226, 492
BspACI CCGC 2 cut(s) 462, 632
BspANI GGCC 2 cut(s) 310, 541
BspLI GGNNCC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 284
BsrI ACTGG 2 cut(s) 110, 742
BssMI GATC 2 cut(s) 226, 492
BssNAI GTATAC 1 cut(s) 796
BssSI CACGAG 1 cut(s) 99
Bst1107I GTATAC 1 cut(s) 796
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 157, 378
Bst6I CTCTTC 2 cut(s) 230, 771
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 210, 486
BstDEI CTNAG 3 cut(s) 87, 189, 770
BstF5I GGATG 1 cut(s) 515
BstKTI GATC 2 cut(s) 229, 495
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 2 cut(s) 226, 492
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstNSI RCATGY 3 cut(s) 365, 607, 802
BstSFI CTRYAG 1 cut(s) 374
BstSLI GKGCMC 2 cut(s) 289, 574
BstV1I GCAGC 2 cut(s) 64, 67
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BstZ17I GTATAC 1 cut(s) 796
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 310, 541
BtsCI GGATG 1 cut(s) 515
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 210, 486
CaiI CAGNNNCTG 1 cut(s) 382
Csp6I GTAC 2 cut(s) 535, 782
CviAII CATG 5 cut(s) 335, 362, 604, 710, 799
CviQI GTAC 2 cut(s) 535, 782
DdeI CTNAG 3 cut(s) 87, 189, 770
DpnI GATC 2 cut(s) 228, 494
DpnII GATC 2 cut(s) 226, 492
Eam1104I CTCTTC 2 cut(s) 230, 771
EarI CTCTTC 2 cut(s) 230, 771
EciI GGCGGA 1 cut(s) 477
Eco147I AGGCCT 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 596, 770
FaeI CATG 5 cut(s) 338, 365, 607, 713, 802
FatI CATG 5 cut(s) 334, 361, 603, 709, 798
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 1 cut(s) 795
Fnu4HI GCNGC 3 cut(s) 78, 81, 633
FokI GGATG 1 cut(s) 522
Fsp4HI GCNGC 3 cut(s) 78, 81, 633
FspBI CTAG 1 cut(s) 401
GluI GCNGC 3 cut(s) 78, 81, 633
HaeIII GGCC 2 cut(s) 310, 541
Hin1II CATG 5 cut(s) 338, 365, 607, 713, 802
HindIII AAGCTT 1 cut(s) 772
HinfI GANTC 4 cut(s) 4, 185, 266, 761
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 3 cut(s) 121, 706, 789
Hpy188III TCNNGA 2 cut(s) 99, 232
Hpy8I GTNNAC 1 cut(s) 796
Hpy99I CGWCG 1 cut(s) 493
HpyCH4III ACNGT 2 cut(s) 157, 378
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 212, 275, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 3 cut(s) 87, 189, 770
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 5 cut(s) 338, 365, 607, 713, 802
Kzo9I GATC 2 cut(s) 226, 492
LmnI GCTCC 3 cut(s) 88, 612, 646
LpnPI CCDG 9 cut(s) 113, 123, 267, 303, 368, 523, 587, 723, 793
Lsp1109I GCAGC 2 cut(s) 64, 67
LweI GCATC 2 cut(s) 139, 500
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 96
MalI GATC 2 cut(s) 228, 494
MboI GATC 2 cut(s) 226, 492
MboII GAAGA 4 cut(s) 47, 247, 275, 758
MfeI CAATTG 2 cut(s) 648, 690
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 2 cut(s) 289, 574
MluCI AATT 4 cut(s) 304, 324, 648, 690
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 2 cut(s) 150, 431
MnlI CCTC 9 cut(s) 40, 46, 321, 452, 458, 525, 552, 552, 654
MseI TTAA 4 cut(s) 252, 471, 657, 734
MunI CAATTG 2 cut(s) 648, 690
Mva1269I GAATGC 1 cut(s) 678
MwoI GCNNNNNNNGC 1 cut(s) 638
NdeI CATATG 1 cut(s) 523
NdeII GATC 2 cut(s) 226, 492
NlaIII CATG 5 cut(s) 338, 365, 607, 713, 802
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 96
NspI RCATGY 3 cut(s) 365, 607, 802
NspV TTCGAA 1 cut(s) 68
PceI AGGCCT 1 cut(s) 541
PciI ACATGT 1 cut(s) 798
PctI GAATGC 1 cut(s) 678
PfeI GAWTC 3 cut(s) 4, 185, 266
PflMI CCANNNNNTGG 1 cut(s) 715
PkrI GCNGC 3 cut(s) 79, 82, 634
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
PscI ACATGT 1 cut(s) 798
PspN4I GGNNCC 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 536, 783
RsaNI GTAC 2 cut(s) 535, 782
SaqAI TTAA 4 cut(s) 252, 471, 657, 734
SatI GCNGC 3 cut(s) 78, 81, 633
Sau3AI GATC 2 cut(s) 226, 492
SchI GAGTC 1 cut(s) 770
SduI GDGCHC 2 cut(s) 289, 574
SfaNI GCATC 2 cut(s) 139, 500
SfcI CTRYAG 1 cut(s) 374
SfuI TTCGAA 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 304, 324, 648, 690
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 2 cut(s) 462, 632
SspI AATATT 1 cut(s) 477
SspMI CTAG 1 cut(s) 401
StuI AGGCCT 1 cut(s) 541
TaaI ACNGT 2 cut(s) 157, 378
TaiI ACGT 1 cut(s) 259
TaqI TCGA 4 cut(s) 45, 51, 68, 159
TasI AATT 4 cut(s) 304, 324, 648, 690
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 3 cut(s) 4, 185, 266
Tru1I TTAA 4 cut(s) 252, 471, 657, 734
Tru9I TTAA 4 cut(s) 252, 471, 657, 734
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 2 cut(s) 77, 80
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 4 cut(s) 17, 194, 363, 510
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 715
XceI RCATGY 3 cut(s) 365, 607, 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 795
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.