Rorug07G0136600

Secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007929
Physical Location & Seq
Forward (+)
10775214 .. 10775447
234 bp
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UTR
Exon/CDS
Intron
Rorug07G0136600.1

Sequence Viewer

Length: 234 bp
ATGTGTGGAAGCTTTTCATGTAACTGCGTAGATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTTCTCGCAAAGATTGTTAATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGAAGTACTCAAATTCGGAAATGCATGTGGAGCAATAACAACTACTAAGAAGGGAGCAATTCCTGCACTCCCCACAGAGTCCGAAGTCCTCGCCCTAATCAAAGAGGCATAA

Protein Analysis

77

Amino Acids

8.0

Weight (kDa)

4.65

Isoelectric Point (pI)

26.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 8 - 66 1.7e-15 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 129
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 71, 152, 185
BstNSI RCATGY 1 cut(s) 150
Csp6I GTAC 1 cut(s) 128
CviAII CATG 2 cut(s) 18, 147
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 2 cut(s) 21, 150
FaiI YATR 3 cut(s) 19, 148, 232
FatI CATG 2 cut(s) 17, 146
Hin1II CATG 2 cut(s) 21, 150
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 50, 200
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 140, 205
Hpy188III TCNNGA 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 146, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 152, 185
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 2 cut(s) 21, 150
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 152, 176
LpnPI CCDG 3 cut(s) 24, 30, 198
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 2 cut(s) 134, 180
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 3 cut(s) 114, 220, 221
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 71, 152, 185
NlaIII CATG 2 cut(s) 21, 150
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 50
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 84
ScaI AGTACT 1 cut(s) 129
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 67
SetI ASST 2 cut(s) 14, 119
SgeI CNNG 8 cut(s) 30, 51, 57, 83, 113, 159, 197, 224
Sse9I AATT 2 cut(s) 134, 180
TasI AATT 2 cut(s) 134, 180
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 6, 42
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 13
ZrmI AGTACT 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.