Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007929

Physical Location & Seq

Genomic Coordinates Forward (+)

27132201 .. 27175075

Gene Structure 42875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25310.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAATGATTCTAAGCAAAAGGCAAAAGAGCTTGCAACTTGGGAAGCAGATCTCAAGAAGAGAGAAAAGGATATTAAACGTAGAGAAGATTCTGTTGCAAAAGCTGGTGTCCCTGTTGATGATAGAAATTGGCCTCCTTTTTTTCCAATTATTCACCATGATATAGCTAATGAAATACCAATACATGCTCAAAGGCTACAATATCTGGCTTTTGCAAGTTGGCTAGGCATAGTTCTTTGCCTATTTTTCAATGTGATTGCGATTATCGTCTGTTGGATTAGAGGCGGAGGTGTTAAAATATTTTTGCTTGCGACGATCTATGCTCTAATGGGATGCCCTCTTTCGTATGTTCTTTGGTACAGGCCTCTCTATCGTGCTATGAGGACTGATAGTGCCCTGAAGTTTGGTTGGTTTTTCTTGTTCTACATGCTCCACATTGGGTTTTGTATTTTTGCGGCGATAGCTCCTCCAATTGTCTTTAATGGGAAATCATTGACGGGCATTCTTTCGGCAGTTGATGTTTTCTCTGACCATGTGGTGGTAGGGATATTCTACTTAACTGGGTTTGCCTTGTTTTGCTTGGAGTCTCTTCTAAGCTTATGGGTACTTCAGAAAGTATACATGTATTTCAGGGGGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

215

Amino Acids

24.55

Weight (kDa)

9.19

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32050
fragaria_vesca	FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510
malus_domestica	MD00G1068600.v1.1 MD06G1023700.v1.1
prunus_persica	Prupe.5G024700_v2.0.a1 Prupe.5G024700_v2.0.a1
pyrus_communis	pycom06g01930 pycom16g25310
rosa_chinensis	RchiOBHm_Chr7g0212781
rosa_laevigata	RLG00000002869
rosa_multiflora	Rmu_sc0000394.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246560
rosa_rugosa	Rorug07G0136600 Rorug07G0136700
rosa_samantha	Rh7AG268200 Rh7BG263600 Rh7CG287200 Rh7DG276300
rosa_wichuraiana	Rw7G023170 Rw7G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	2 cut(s)	285, 455
AcuI	CTGAAG	2 cut(s)	419, 593
AfaI	GTAC	2 cut(s)	359, 606
AfiI	CCNNNNNNNGG	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	5 cut(s)	31, 104, 167, 464, 597
AluI	AGCT	5 cut(s)	31, 104, 167, 464, 597
Alw26I	GTCTC	1 cut(s)	591
AoxI	GGCC	2 cut(s)	131, 362
AsuHPI	GGTGA	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	565
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	397
BshFI	GGCC	2 cut(s)	133, 364
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	133, 364
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	49, 315
BspACI	CCGC	2 cut(s)	285, 455
BspANI	GGCC	2 cut(s)	133, 364
BsrI	ACTGG	1 cut(s)	565
BssMI	GATC	2 cut(s)	49, 315
BssNAI	GTATAC	1 cut(s)	619
Bst1107I	GTATAC	1 cut(s)	619
Bst6I	CTCTTC	2 cut(s)	53, 594
BstC8I	GCNNGC	2 cut(s)	33, 309
BstDEI	CTNAG	2 cut(s)	12, 593
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	52, 318
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	2 cut(s)	49, 315
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	3 cut(s)	188, 430, 625
BstSLI	GKGCMC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BstZ17I	GTATAC	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	133, 364
BtsCI	GGATG	1 cut(s)	338
Cac8I	GCNNGC	2 cut(s)	33, 309
Csp6I	GTAC	2 cut(s)	358, 605
CviAII	CATG	5 cut(s)	158, 185, 427, 533, 622
CviQI	GTAC	2 cut(s)	358, 605
DdeI	CTNAG	2 cut(s)	12, 593
DpnI	GATC	2 cut(s)	51, 317
DpnII	GATC	2 cut(s)	49, 315
Eam1104I	CTCTTC	2 cut(s)	53, 594
EarI	CTCTTC	2 cut(s)	53, 594
EciI	GGCGGA	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	364
Eco57I	CTGAAG	2 cut(s)	419, 593
FaeI	CATG	5 cut(s)	161, 188, 430, 536, 625
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	5 cut(s)	157, 184, 426, 532, 621
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	133, 364
Hin1II	CATG	5 cut(s)	161, 188, 430, 536, 625
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	3 cut(s)	8, 89, 584
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	2 cut(s)	529, 612
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	619
Hpy99I	CGWCG	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	35, 98, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	2 cut(s)	12, 593
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	5 cut(s)	161, 188, 430, 536, 625
Kzo9I	GATC	2 cut(s)	49, 315
LmnI	GCTCC	2 cut(s)	435, 469
LpnPI	CCDG	7 cut(s)	90, 126, 191, 346, 410, 546, 616
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	79
MalI	GATC	2 cut(s)	51, 317
MboI	GATC	2 cut(s)	49, 315
MboII	GAAGA	3 cut(s)	70, 98, 581
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	3 cut(s)	127, 147, 471
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	7 cut(s)	144, 275, 281, 348, 375, 375, 477
MseI	TTAA	4 cut(s)	75, 294, 480, 557
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	2 cut(s)	49, 315
NlaIII	CATG	5 cut(s)	161, 188, 430, 536, 625
NspI	RCATGY	3 cut(s)	188, 430, 625
PceI	AGGCCT	1 cut(s)	364
PciI	ACATGT	1 cut(s)	621
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	8, 89
PflMI	CCANNNNNTGG	1 cut(s)	538
PkrI	GCNGC	1 cut(s)	457
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PscI	ACATGT	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	2 cut(s)	359, 606
RsaNI	GTAC	2 cut(s)	358, 605
SaqAI	TTAA	4 cut(s)	75, 294, 480, 557
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	49, 315
SchI	GAGTC	1 cut(s)	593
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	7 cut(s)	33, 82, 106, 169, 292, 466, 599
SfaNI	GCATC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	127, 147, 471
SseBI	AGGCCT	1 cut(s)	364
SsiI	CCGC	2 cut(s)	285, 455
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	82
TasI	AATT	3 cut(s)	127, 147, 471
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	8, 89
Tru1I	TTAA	4 cut(s)	75, 294, 480, 557
Tru9I	TTAA	4 cut(s)	75, 294, 480, 557
TspDTI	ATGAA	2 cut(s)	17, 186
Van91I	CCANNNNNTGG	1 cut(s)	538
XceI	RCATGY	3 cut(s)	188, 430, 625
XmiI	GTMKAC	1 cut(s)	618
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.