Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007929

Physical Location & Seq

Genomic Coordinates Reverse (-)

2765910 .. 2773669

Gene Structure 7760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G024700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAATCGGCACCACGACCCCAACCCATTTGACGAAGAAGTGGTCGAGGTCGAGGTCAATCCCTTTTCGAATGGTGCTGGTGCTCCCAAGTCAAAGTCACGTGTTCCACCATTGGCATCTGAACCTCTGGGTTTTGGGCACAAGCATGATGCAACAGTCGATATACCATTGGATACAATGAATGATTCTAAGCAAAAGGCAAAAGAGCTTGCAACTTGGGAAGCAGATCTCAAGAGGAGAGAAAAGGATATTAAACGGAGAGAAGATTCTGTTGCAAAGGCTGGTGTCCCCGCTGATGATAGAAATTGGCCTCCATTTTTTCCAATTATTCACCATGATATAGCTAATGAAATACCAGTACATGCTCAAAGGCTACAATATCTGGCTTTTGCAAGTTGGCTAGGCATAGTTCTTTGCCTATCTTTTAATGCAATTGCTATTATTGTTTGTTGGATTAGAGGCGGAGGTGTTAAAATATTTTTGCTTGCAACGATCTATGCTCTACTTGGATGCCCTCTTTCATATGTTCTGTGGTACAGGCCTCTCTATCGTGCAATGAGGACAGATAGTGCCTTTAAGTTTGGTTGGTTTTTCCTGTTCTACATGCTCCATATTGGGTTTTGCATTTTTGCGGCGATAGCTCCTCCAATTGTCTTTAATGGGAGATCATTGACGGGCATTCTTCCGGCAATTGATGTCTTCTCAGACCATGTGGTGGTAGGGATATTCTACTTAACTGGGTTTGCCTTGTTTTGCTTAGAAACCCTTCTAAGCTTTTGGGTACTTCAGAAAGTATACATGTATTTCAGGGGGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

274

Amino Acids

30.95

Weight (kDa)

8.23

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32050
fragaria_vesca	FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510
malus_domestica	MD00G1068600.v1.1 MD06G1023700.v1.1
prunus_persica	Prupe.5G024700_v2.0.a1 Prupe.5G024700_v2.0.a1
pyrus_communis	pycom06g01930 pycom16g25310
rosa_chinensis	RchiOBHm_Chr7g0212781
rosa_laevigata	RLG00000002869
rosa_multiflora	Rmu_sc0000394.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246560
rosa_rugosa	Rorug07G0136600 Rorug07G0136700
rosa_samantha	Rh7AG268200 Rh7BG263600 Rh7CG287200 Rh7DG276300
rosa_wichuraiana	Rw7G023170 Rw7G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	795
AciI	CCGC	3 cut(s)	291, 462, 632
AcuI	CTGAAG	1 cut(s)	770
AcvI	CACGTG	1 cut(s)	101
AfaI	GTAC	3 cut(s)	360, 536, 783
AfiI	CCNNNNNNNGG	1 cut(s)	715
AflIII	ACRYGT	2 cut(s)	100, 798
AluBI	AGCT	4 cut(s)	208, 344, 641, 774
AluI	AGCT	4 cut(s)	208, 344, 641, 774
Alw21I	GWGCWC	1 cut(s)	85
AoxI	GGCC	2 cut(s)	308, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
Asp700I	GAANNNNTTC	1 cut(s)	765
AsuHPI	GGTGA	1 cut(s)	323
AsuII	TTCGAA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	9
BbrPI	CACGTG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
BmiI	GGNNCC	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	747
BmsI	GCATC	3 cut(s)	125, 139, 500
BmuI	ACTGGG	1 cut(s)	747
BpiI	GAAGAC	1 cut(s)	691
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse1I	ACTGG	2 cut(s)	356, 742
Bse3DI	GCAATG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	515
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	2 cut(s)	356, 742
BseRI	GAGGAG	2 cut(s)	250, 633
BseSI	GKGCMC	1 cut(s)	141
BshFI	GGCC	2 cut(s)	310, 541
BshNI	GGYRCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	2 cut(s)	310, 541
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	85, 141
Bsp143I	GATC	3 cut(s)	226, 492, 665
BspACI	CCGC	3 cut(s)	291, 462, 632
BspANI	GGCC	2 cut(s)	310, 541
BspCNI	CTCAG	1 cut(s)	716
BspLI	GGNNCC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	356, 742
BssMI	GATC	3 cut(s)	226, 492, 665
BssNAI	GTATAC	1 cut(s)	796
Bst1107I	GTATAC	1 cut(s)	796
Bst4CI	ACNGT	1 cut(s)	157
BstBAI	YACGTR	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	210, 486
BstDEI	CTNAG	4 cut(s)	189, 703, 757, 770
BstF5I	GGATG	1 cut(s)	515
BstKTI	GATC	3 cut(s)	229, 495, 668
BstMBI	GATC	3 cut(s)	226, 492, 665
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNSI	RCATGY	3 cut(s)	365, 607, 802
BstSLI	GKGCMC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BstZ17I	GTATAC	1 cut(s)	796
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	310, 541
BtsCI	GGATG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	210, 486
Csp6I	GTAC	3 cut(s)	359, 535, 782
CviAII	CATG	6 cut(s)	146, 335, 362, 604, 710, 799
CviQI	GTAC	3 cut(s)	359, 535, 782
DdeI	CTNAG	4 cut(s)	189, 703, 757, 770
DpnI	GATC	3 cut(s)	228, 494, 667
DpnII	GATC	3 cut(s)	226, 492, 665
EciI	GGCGGA	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	770
Eco72I	CACGTG	1 cut(s)	101
FaeI	CATG	6 cut(s)	149, 338, 365, 607, 713, 802
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	6 cut(s)	145, 334, 361, 603, 709, 798
FauI	CCCGC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	1 cut(s)	522
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	310, 541
HapII	CCGG	1 cut(s)	686
Hin1II	CATG	6 cut(s)	149, 338, 365, 607, 713, 802
HindIII	AAGCTT	1 cut(s)	772
HinfI	GANTC	3 cut(s)	4, 185, 266
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	3 cut(s)	121, 706, 789
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	796
HpyAV	CCTTC	1 cut(s)	776
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	8 cut(s)	152, 212, 275, 392, 431, 488, 554, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	4 cut(s)	189, 703, 757, 770
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	6 cut(s)	149, 338, 365, 607, 713, 802
Kzo9I	GATC	3 cut(s)	226, 492, 665
LmnI	GCTCC	3 cut(s)	88, 612, 646
LweI	GCATC	3 cut(s)	125, 139, 500
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	3 cut(s)	228, 494, 667
MboI	GATC	3 cut(s)	226, 492, 665
MboII	GAAGA	4 cut(s)	47, 275, 674, 691
MfeI	CAATTG	3 cut(s)	432, 648, 690
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	85, 141
MluCI	AATT	5 cut(s)	304, 324, 432, 648, 690
MmeI	TCCRAC	1 cut(s)	431
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	6 cut(s)	252, 426, 471, 576, 657, 734
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	686
MunI	CAATTG	3 cut(s)	432, 648, 690
Mva1269I	GAATGC	1 cut(s)	678
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	3 cut(s)	226, 492, 665
NlaIII	CATG	6 cut(s)	149, 338, 365, 607, 713, 802
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	3 cut(s)	365, 607, 802
NspV	TTCGAA	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	541
PciI	ACATGT	1 cut(s)	798
PctI	GAATGC	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	3 cut(s)	4, 185, 266
PflMI	CCANNNNNTGG	1 cut(s)	715
PkrI	GCNGC	1 cut(s)	634
PmaCI	CACGTG	1 cut(s)	101
PmlI	CACGTG	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	101
PscI	ACATGT	1 cut(s)	798
PspCI	CACGTG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	360, 536, 783
RsaNI	GTAC	3 cut(s)	359, 535, 782
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	6 cut(s)	252, 426, 471, 576, 657, 734
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	3 cut(s)	226, 492, 665
SduI	GDGCHC	2 cut(s)	85, 141
SetI	ASST	9 cut(s)	51, 57, 103, 127, 210, 346, 469, 643, 776
SfaNI	GCATC	3 cut(s)	125, 139, 500
SfuI	TTCGAA	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	5 cut(s)	304, 324, 432, 648, 690
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	3 cut(s)	291, 462, 632
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	1 cut(s)	401
StuI	AGGCCT	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	4 cut(s)	45, 51, 68, 159
TasI	AATT	5 cut(s)	304, 324, 432, 648, 690
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	4, 185, 266
Tru1I	TTAA	6 cut(s)	252, 426, 471, 576, 657, 734
Tru9I	TTAA	6 cut(s)	252, 426, 471, 576, 657, 734
TseFI	GTSAC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	4 cut(s)	17, 194, 363, 510
TspGWI	ACGGA	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	715
XceI	RCATGY	3 cut(s)	365, 607, 802
XmiI	GTMKAC	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.