Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000394.1

Orthogroup ID

OG0007929

Physical Location & Seq

Genomic Coordinates Forward (+)

111314 .. 118434

Gene Structure 7121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000394.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgaatcggcaccacgaccccaatccctttgaagaagaggtcgaggtcaatcccttttcgaatgggaagtcacggattccaccattggcatctgaacctcttggttttgggcaaaagcatgatgcaacagttgatataccattggacacaatgagtgattctaagcaaaaggcaaaagagcttgcaacctgggaagcagatctcaagagaagagaaaaggatatcaaacgaagagaggattctgttgcaaaagttggtgtccctgatgatggaaaaaattggcctccattctttccgattattcaccatgatattgccaatgaaattcctgtacatgctcaaaggctacagtatatggcttttgcaagttggttaggtatagttctttgcctcgtgttcaatgtaattgctgttatcatctgttgggttagaggaggaggctccaaaatatttttccttgcagtcatctatgctctacttggaataccactctcatatgtgctgtggtacaggcccctctatcgggcaatgaggacagatagtgccttgaagtttggttggtttttcctgttctacatgctccatattgggttttgtattatcgcggctatagcgcctccaattgtctttcaaggaaaatcactgacgggcattcttgctgcaatagatgtcttttctgaccatgcggtggtagggatattctacttaattgggtttggcttgttttgcttagagacgcttctaagcttttgggtactccagaaaatatacgtgtatttcagggggcacaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

264

Amino Acids

30.03

Weight (kDa)

8.28

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32050
fragaria_vesca	FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510
malus_domestica	MD00G1068600.v1.1 MD06G1023700.v1.1
prunus_persica	Prupe.5G024700_v2.0.a1 Prupe.5G024700_v2.0.a1
pyrus_communis	pycom06g01930 pycom16g25310
rosa_chinensis	RchiOBHm_Chr7g0212781
rosa_laevigata	RLG00000002869
rosa_multiflora	Rmu_sc0000394.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246560
rosa_rugosa	Rorug07G0136600 Rorug07G0136700
rosa_samantha	Rh7AG268200 Rh7BG263600 Rh7CG287200 Rh7DG276300
rosa_wichuraiana	Rw7G023170 Rw7G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccII	CGCG	1 cut(s)	605
AciI	CCGC	2 cut(s)	605, 686
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	3 cut(s)	333, 509, 756
AfiI	CCNNNNNNNGG	4 cut(s)	269, 522, 523, 688
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	4 cut(s)	32, 400, 550, 632
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	2 cut(s)	181, 747
AluI	AGCT	2 cut(s)	181, 747
Alw26I	GTCTC	1 cut(s)	728
AoxI	GGCC	2 cut(s)	281, 512
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	1 cut(s)	616
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	296
AsuII	TTCGAA	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	728
BfmI	CTRYAG	2 cut(s)	347, 609
BfoI	RGCGCY	1 cut(s)	617
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	606, 660
BlsI	GCNGC	2 cut(s)	607, 661
Bme1390I	CCNGG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	3 cut(s)	11, 442, 515
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	98, 112
BpmI	CTGGAG	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	772
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 522, 523, 688
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	269, 522, 523, 688
BseMI	GCAATG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	447, 450
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	283, 514
BshNI	GGYRCC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	4 cut(s)	269, 522, 523, 688
BsmAI	GTCTC	1 cut(s)	728
BsmBI	CGTCTC	1 cut(s)	728
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	651
BsnI	GGCC	2 cut(s)	283, 514
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	2 cut(s)	605, 686
BspANI	GGCC	2 cut(s)	283, 514
BspFNI	CGCG	1 cut(s)	605
BspLI	GGNNCC	3 cut(s)	11, 442, 515
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	130, 351
Bst6I	CTCTTC	3 cut(s)	30, 205, 226
BstAUI	TGTACA	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	772
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	162, 730, 743
BstFNI	CGCG	1 cut(s)	605
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 726
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	2 cut(s)	338, 580
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	2 cut(s)	347, 609
BstSLI	GKGCMC	1 cut(s)	789
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	283, 514
BtsIMutI	CAGTG	1 cut(s)	641
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	616
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	1 cut(s)	745
Csp6I	GTAC	3 cut(s)	332, 508, 755
CviAII	CATG	5 cut(s)	119, 308, 335, 577, 683
CviJI	RGCY	9 cut(s)	181, 283, 346, 359, 441, 514, 608, 720, 747
CviKI_1	RGCY	9 cut(s)	181, 283, 346, 359, 441, 514, 608, 720, 747
CviQI	GTAC	3 cut(s)	332, 508, 755
DdeI	CTNAG	3 cut(s)	162, 730, 743
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	30, 205, 226
EarI	CTCTTC	3 cut(s)	30, 205, 226
Eco32I	GATATC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	728
FaeI	CATG	5 cut(s)	122, 311, 338, 580, 686
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	5 cut(s)	118, 307, 334, 576, 682
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	606, 660
Fsp4HI	GCNGC	2 cut(s)	606, 660
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	2 cut(s)	606, 660
GsuI	CTGGAG	1 cut(s)	743
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	283, 514
HgaI	GACGC	1 cut(s)	745
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	5 cut(s)	122, 311, 338, 580, 686
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HindIII	AAGCTT	1 cut(s)	745
HinfI	GANTC	4 cut(s)	4, 76, 158, 239
HphI	GGTGA	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	94, 297, 679
Hpy188III	TCNNGA	2 cut(s)	205, 760
HpyCH4III	ACNGT	2 cut(s)	130, 351
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	6 cut(s)	125, 185, 248, 365, 461, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 726
HpyF3I	CTNAG	3 cut(s)	162, 730, 743
HpySE526I	ACGT	1 cut(s)	771
Hsp92II	CATG	5 cut(s)	122, 311, 338, 580, 686
HspAI	GCGC	1 cut(s)	614
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	446, 585
LpnPI	CCDG	8 cut(s)	175, 202, 276, 342, 496, 581, 766, 773
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	2 cut(s)	98, 112
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	44, 47, 222, 243
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	5 cut(s)	277, 324, 405, 621, 708
MseI	TTAA	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	190
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	2 cut(s)	611, 726
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	122, 311, 338, 580, 686
NlaIV	GGNNCC	3 cut(s)	11, 442, 515
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	2 cut(s)	338, 580
NspV	TTCGAA	1 cut(s)	59
PctI	GAATGC	1 cut(s)	651
PfeI	GAWTC	4 cut(s)	4, 76, 158, 239
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	607, 661
Ppu21I	YACGTR	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	3 cut(s)	11, 442, 515
PspPI	GGNCC	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	3 cut(s)	333, 509, 756
RsaNI	GTAC	3 cut(s)	332, 508, 755
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	2 cut(s)	606, 660
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	513
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	789
SetI	ASST	8 cut(s)	42, 48, 100, 183, 191, 379, 749, 774
SfaNI	GCATC	2 cut(s)	98, 112
SfcI	CTRYAG	2 cut(s)	347, 609
SfuI	TTCGAA	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	277, 324, 405, 621, 708
SsiI	CCGC	2 cut(s)	605, 686
SspI	AATATT	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	130, 351
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	2 cut(s)	42, 59
TasI	AATT	5 cut(s)	277, 324, 405, 621, 708
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	4 cut(s)	4, 76, 158, 239
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	17, 336
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	648
Van91I	CCANNNNNTGG	1 cut(s)	688
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	2 cut(s)	338, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.