Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007929

Physical Location & Seq

Genomic Coordinates Reverse (-)

10776652 .. 10780554

Gene Structure 3903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCAAGACCATTCTGGTCACCGGCGGGGCCGGTTACATCGGTAGCCACACCGTGCTGCAGCTTTTACTCGGCGGCTTCAGCACCGTCGTCGTTGACAACCTTGACAATTCCTCTGAAATTGCTATTGACCGTGTCAGAGAACTCGCTGGGGATTTTGGCAGGAACCTCTCCTTTCACAAGATTGACCTCAGGGACAAACCAGCACTGGAAAAACTCTTTTCTGCAACAAAATTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTTGGTGAAAGTGTTCAGAAGCCATTGCTCTACTATAACAACAATATTGTGGGGACAATTACTCTGTTGGAAGTCATGGCAGCCCATGGTTGCAAAAAGATTGTGTTCTCATCGTCAGCCACTGTTTATGGTTGGCCGAAGGTGGTTCCGTGTACCGAGGAGTTCCCTCTTGTTGCAGCAAATCCATATGGGCGAACTAAGCTCTACATTGAAGAAATTTGTCGTGATATATACCGCTCAGACTCTGAGTGGAAAGTCATATTGCTGAGATACTTCAATCCAGTTGGTGCACACCATAGTGGCTATATTGGTGAGGATCCTCATGGGATCCCAAACAATCTCATGCCATTTGTGCAGCAAGTTGCTGTTGGAAGGCGTCCGGCACTGACGGTGTTTGGAAACGACTATAATACCAAAGATGGTACTGGGGTGCGAGATTATGTTCATGTTGATGATTTAGCACATGGGCACATTGCTGCATTGAACAAGTTAGAAGAAGCTAATATAGGTTGTGAGGTGTACAATTTAGGAACTGGTAAAGGAACATCGGTCTTGGAGATGGTTGCGGCATTTGAAAAGGCATCTGGAAAGAAAATTCCTCTTGTTATTGCTGGCCGGCGACCTGGTGATGCTGAAGTTGTCTATGCATCAACAGATAAGGCAGAGAGGGAACTGAACTGGAAGGCGAAATATAACATTGATGACATGTGCCGGGATCAGTGGAACTGGGCTAGCAAGAACCCATATGGCTATGGACCTCAAGACAATAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

348

Amino Acids

38.26

Weight (kDa)

6.37

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	4 - 166	3.3e-09	RmlD substrate binding domain
Epimerase	PF01370	5 - 267	1.2e-56	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	5 - 187	3.8e-13	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	6 - 329	3.9e-67	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	6 - 135	4.2e-13	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32050
fragaria_vesca	FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510
malus_domestica	MD00G1068600.v1.1 MD06G1023700.v1.1
prunus_persica	Prupe.5G024700_v2.0.a1 Prupe.5G024700_v2.0.a1
pyrus_communis	pycom06g01930 pycom16g25310
rosa_chinensis	RchiOBHm_Chr7g0212781
rosa_laevigata	RLG00000002869
rosa_multiflora	Rmu_sc0000394.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246560
rosa_rugosa	Rorug07G0136600 Rorug07G0136700
rosa_samantha	Rh7AG268200 Rh7BG263600 Rh7CG287200 Rh7DG276300
rosa_wichuraiana	Rw7G023170 Rw7G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	507
AciI	CCGC	4 cut(s)	27, 75, 505, 836
AclWI	GGATC	5 cut(s)	581, 592, 594, 605, 993
AcoI	YGGCCR	3 cut(s)	3, 404, 883
AcsI	RAATTY	3 cut(s)	233, 486, 864
AcuI	CTGAAG	2 cut(s)	64, 924
AcyI	GRCGYC	1 cut(s)	646
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	3 cut(s)	424, 694, 791
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	4 cut(s)	482, 547, 754, 845
AjnI	CCWGG	1 cut(s)	892
AleI	CACNNNNGTG	1 cut(s)	567
AluBI	AGCT	4 cut(s)	64, 472, 770, 1044
AluI	AGCT	4 cut(s)	64, 472, 770, 1044
Alw21I	GWGCWC	1 cut(s)	562
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	5 cut(s)	581, 592, 594, 605, 993
AlwNI	CAGNNNCTG	2 cut(s)	392, 515
AoxI	GGCC	4 cut(s)	3, 30, 404, 883
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	7 cut(s)	58, 61, 350, 446, 625, 746, 1041
ApoI	RAATTY	3 cut(s)	233, 486, 864
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	30, 1025
AsuC2I	CCSGG	1 cut(s)	983
AsuHPI	GGTGA	4 cut(s)	13, 287, 593, 908
AsuNHI	GCTAGC	1 cut(s)	1001
AvaII	GGWCC	1 cut(s)	1025
AxyI	CCTNAGG	1 cut(s)	191
BaeGI	GKGCMC	2 cut(s)	562, 741
BaeI	ACNNNNGTAYC	2 cut(s)	684, 717
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	586, 597
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	6 cut(s)	45, 73, 362, 458, 637, 733
BccI	CCATC	2 cut(s)	683, 823
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	1 cut(s)	894
BcnI	CCSGG	1 cut(s)	983
BfaI	CTAG	1 cut(s)	1002
BfmI	CTRYAG	1 cut(s)	59
BisI	GCNGC	9 cut(s)	59, 62, 76, 351, 447, 626, 747, 837, 1042
BlsI	GCNGC	9 cut(s)	60, 63, 77, 352, 448, 627, 748, 838, 1043
Bme1390I	CCNGG	2 cut(s)	894, 983
Bme18I	GGWCC	1 cut(s)	1025
BmgT120I	GGNCC	2 cut(s)	30, 1025
BmiI	GGNNCC	5 cut(s)	31, 167, 417, 588, 599
BmrFI	CCNGG	2 cut(s)	894, 983
BmrI	ACTGGG	2 cut(s)	705, 1006
BmsI	GCATC	4 cut(s)	229, 860, 889, 926
BmtI	GCTAGC	1 cut(s)	1005
BmuI	ACTGGG	2 cut(s)	705, 1006
BpuEI	CTTGAG	1 cut(s)	1014
BpuMI	CCSGG	1 cut(s)	983
BsaHI	GRCGYC	1 cut(s)	646
BsaJI	CCNNGG	2 cut(s)	355, 426
Bse118I	RCCGGY	3 cut(s)	23, 32, 885
Bse1I	ACTGG	6 cut(s)	213, 551, 700, 808, 953, 1001
Bse21I	CCTNAGG	1 cut(s)	191
Bse3DI	GCAATG	2 cut(s)	293, 741
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	2 cut(s)	355, 426
BseMI	GCAATG	2 cut(s)	293, 741
BseMII	CTCAG	4 cut(s)	205, 507, 522, 527
BseNI	ACTGG	6 cut(s)	213, 551, 700, 808, 953, 1001
BseRI	GAGGAG	1 cut(s)	443
BseSI	GKGCMC	2 cut(s)	562, 741
BseXI	GCAGC	6 cut(s)	45, 73, 362, 458, 637, 733
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	644
BshFI	GGCC	4 cut(s)	5, 32, 406, 885
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	5 cut(s)	24, 33, 650, 886, 982
BslFI	GGGAC	2 cut(s)	209, 337
BsmFI	GGGAC	2 cut(s)	209, 337
BsnI	GGCC	4 cut(s)	5, 32, 406, 885
Bsp1286I	GDGCHC	2 cut(s)	562, 741
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	3 cut(s)	586, 597, 985
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	4 cut(s)	27, 75, 505, 836
BspANI	GGCC	4 cut(s)	5, 32, 406, 885
BspCNI	CTCAG	4 cut(s)	204, 508, 521, 528
BspLI	GGNNCC	5 cut(s)	31, 167, 417, 588, 599
BspMAI	CTGCAG	1 cut(s)	63
BspOI	GCTAGC	1 cut(s)	1005
BspPI	GGATC	5 cut(s)	581, 592, 594, 605, 993
BsrBI	CCGCTC	1 cut(s)	507
BsrDI	GCAATG	2 cut(s)	293, 741
BsrFI	RCCGGY	3 cut(s)	23, 32, 885
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	6 cut(s)	213, 551, 700, 808, 953, 1001
BssAI	RCCGGY	3 cut(s)	23, 32, 885
BssECI	CCNNGG	2 cut(s)	355, 426
BssMI	GATC	3 cut(s)	586, 597, 985
BssNI	GRCGYC	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	5 cut(s)	55, 88, 134, 394, 661
BstACI	GRCGYC	1 cut(s)	646
BstAUI	TGTACA	1 cut(s)	789
BstC8I	GCNNGC	3 cut(s)	883, 887, 1003
BstDEI	CTNAG	5 cut(s)	191, 468, 508, 516, 536
BstDSI	CCRYGG	1 cut(s)	355
BstEII	GGTNACC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	589, 600, 988
BstMBI	GATC	3 cut(s)	586, 597, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 469, 622
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	979
BstPI	GGTNACC	1 cut(s)	19
BstSCI	CCNGG	2 cut(s)	892, 981
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	2 cut(s)	562, 741
BstV1I	GCAGC	6 cut(s)	45, 73, 362, 458, 637, 733
BstX2I	RGATCY	2 cut(s)	586, 597
BstYI	RGATCY	2 cut(s)	586, 597
Bsu36I	CCTNAGG	1 cut(s)	191
BsuRI	GGCC	4 cut(s)	5, 32, 406, 885
BtgI	CCRYGG	1 cut(s)	355
BtsIMutI	CAGTG	4 cut(s)	206, 390, 653, 995
Cac8I	GCNNGC	3 cut(s)	883, 887, 1003
CaiI	CAGNNNCTG	2 cut(s)	392, 515
Cfr10I	RCCGGY	3 cut(s)	23, 32, 885
Cfr13I	GGNCC	2 cut(s)	30, 1025
CseI	GACGC	1 cut(s)	635
CsiI	ACCWGGT	1 cut(s)	892
Csp6I	GTAC	3 cut(s)	423, 693, 790
CviAII	CATG	7 cut(s)	346, 356, 593, 613, 716, 734, 976
CviQI	GTAC	3 cut(s)	423, 693, 790
DdeI	CTNAG	5 cut(s)	191, 468, 508, 516, 536
DpnI	GATC	3 cut(s)	588, 599, 987
DpnII	GATC	3 cut(s)	586, 597, 985
DraIII	CACNNNGTG	1 cut(s)	55
EaeI	YGGCCR	3 cut(s)	3, 404, 883
Eco130I	CCWWGG	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	1025
Eco57I	CTGAAG	2 cut(s)	64, 924
Eco81I	CCTNAGG	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	7 cut(s)	349, 359, 596, 616, 719, 737, 979
FaqI	GGGAC	2 cut(s)	209, 337
FatI	CATG	7 cut(s)	345, 355, 592, 612, 715, 733, 975
FauI	CCCGC	1 cut(s)	20
FauNDI	CATATG	2 cut(s)	457, 1015
Fnu4HI	GCNGC	9 cut(s)	59, 62, 76, 351, 447, 626, 747, 837, 1042
Fsp4HI	GCNGC	9 cut(s)	59, 62, 76, 351, 447, 626, 747, 837, 1042
FspBI	CTAG	1 cut(s)	1002
GluI	GCNGC	9 cut(s)	59, 62, 76, 351, 447, 626, 747, 837, 1042
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	5, 32, 406, 885
HapII	CCGG	5 cut(s)	24, 33, 650, 886, 982
HgaI	GACGC	1 cut(s)	635
Hin1I	GRCGYC	1 cut(s)	646
Hin1II	CATG	7 cut(s)	349, 359, 596, 616, 719, 737, 979
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	5 cut(s)	24, 33, 650, 886, 982
HphI	GGTGA	4 cut(s)	13, 287, 593, 908
Hpy166II	GTNNAC	4 cut(s)	97, 423, 560, 790
Hpy188I	TCNGA	5 cut(s)	118, 140, 288, 511, 517
Hpy188III	TCNNGA	3 cut(s)	494, 855, 1031
Hpy8I	GTNNAC	4 cut(s)	97, 423, 560, 790
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	3 cut(s)	403, 636, 946
HpyCH4III	ACNGT	5 cut(s)	55, 88, 134, 394, 661
HpyCH4V	TGCA	8 cut(s)	61, 227, 363, 446, 560, 625, 749, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 469, 622
HpyF3I	CTNAG	5 cut(s)	191, 468, 508, 516, 536
Hsp92I	GRCGYC	1 cut(s)	646
Hsp92II	CATG	7 cut(s)	349, 359, 596, 616, 719, 737, 979
KroI	GCCGGC	1 cut(s)	885
KroNI	GCCGGC	1 cut(s)	887
Kzo9I	GATC	3 cut(s)	586, 597, 985
Lsp1109I	GCAGC	6 cut(s)	45, 73, 362, 458, 637, 733
LweI	GCATC	4 cut(s)	229, 860, 889, 926
MabI	ACCWGGT	1 cut(s)	892
MaeI	CTAG	1 cut(s)	1002
MaeIII	GTNAC	2 cut(s)	19, 35
MalI	GATC	3 cut(s)	588, 599, 987
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	3 cut(s)	586, 597, 985
MboII	GAAGA	2 cut(s)	494, 776
MflI	RGATCY	2 cut(s)	586, 597
MhlI	GDGCHC	2 cut(s)	562, 741
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	109, 120, 233, 327, 486, 793, 864
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	318, 619
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	919
MroNI	GCCGGC	1 cut(s)	885
MroXI	GAANNNNTTC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	567, 720
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1044
MspI	CCGG	5 cut(s)	24, 33, 650, 886, 982
MspR9I	CCNGG	2 cut(s)	894, 983
MvaI	CCWGG	1 cut(s)	894
MwoI	GCNNNNNNNGC	3 cut(s)	81, 469, 622
NaeI	GCCGGC	1 cut(s)	887
NciI	CCSGG	1 cut(s)	983
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	2 cut(s)	457, 1015
NdeII	GATC	3 cut(s)	586, 597, 985
NgoMIV	GCCGGC	1 cut(s)	885
NheI	GCTAGC	1 cut(s)	1001
NlaIII	CATG	7 cut(s)	349, 359, 596, 616, 719, 737, 979
NlaIV	GGNNCC	5 cut(s)	31, 167, 417, 588, 599
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	1 cut(s)	979
OliI	CACNNNNGTG	1 cut(s)	567
PciI	ACATGT	1 cut(s)	975
PdiI	GCCGGC	1 cut(s)	887
PdmI	GAANNNNTTC	1 cut(s)	282
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	9 cut(s)	60, 63, 77, 352, 448, 627, 748, 838, 1043
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PscI	ACATGT	1 cut(s)	975
Psp6I	CCWGG	1 cut(s)	892
PspEI	GGTNACC	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	5 cut(s)	31, 167, 417, 588, 599
PspPI	GGNCC	2 cut(s)	30, 1025
PstI	CTGCAG	1 cut(s)	63
PstNI	CAGNNNCTG	2 cut(s)	392, 515
PsuI	RGATCY	2 cut(s)	586, 597
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	1044
RsaI	GTAC	3 cut(s)	424, 694, 791
RsaNI	GTAC	3 cut(s)	423, 693, 790
RseI	CAYNNNNRTG	2 cut(s)	567, 720
SatI	GCNGC	9 cut(s)	59, 62, 76, 351, 447, 626, 747, 837, 1042
Sau3AI	GATC	3 cut(s)	586, 597, 985
Sau96I	GGNCC	2 cut(s)	30, 1025
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	894, 983
SduI	GDGCHC	2 cut(s)	562, 741
SexAI	ACCWGGT	1 cut(s)	892
SfaNI	GCATC	4 cut(s)	229, 860, 889, 926
SfcI	CTRYAG	1 cut(s)	59
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	1025
SmiMI	CAYNNNNRTG	2 cut(s)	567, 720
SmlI	CTYRAG	1 cut(s)	1029
SmoI	CTYRAG	1 cut(s)	1029
Sse9I	AATT	7 cut(s)	109, 120, 233, 327, 486, 793, 864
SsiI	CCGC	4 cut(s)	27, 75, 505, 836
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	1002
StyD4I	CCNGG	2 cut(s)	892, 981
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	5 cut(s)	55, 88, 134, 394, 661
TaqII	GACCGA	1 cut(s)	808
TasI	AATT	7 cut(s)	109, 120, 233, 327, 486, 793, 864
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	2 cut(s)	78, 839
TscAI	CASTG	4 cut(s)	213, 397, 660, 995
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	7 cut(s)	58, 61, 350, 446, 625, 746, 1041
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	704
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	4 cut(s)	213, 397, 660, 995
Tth111I	GACNNNGTC	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	1025
XapI	RAATTY	3 cut(s)	233, 486, 864
XceI	RCATGY	1 cut(s)	979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	1002
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.