Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007929

Physical Location & Seq

Genomic Coordinates Reverse (-)

40903963 .. 40910962

Gene Structure 7000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002869

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAATCGGCACCACGACCCCAATCCCTTTGAAGAAGAAGAGGTCGAGGTCAATCCCTTTTCGAATGGGAAGTCACGGATTCCACCATTGGCATCTGAACCTCTTGGTTTTGGGCAGAAACATGATGCAACAGTTGATATACCATTGGACTCAATGAGTGATTCTAAGCAAAAGGCAAAAGAGCTTGCAGCCTGGGAAGCAGATCTCAAGAAAAGAGAAAAGGATATCAAACGAAGAGAGGATTCTGTTGCAAAAGCTGGTGTCCCCGATGATGGAAAAAATTGGCCTCCGTTCTTTCCGATTATTCACCATGATATTGCCAATGAAATTCCTGTACATGCTCAAAGGCTACAGTATATGGCTTTTGCAAGTTGGTTAGGTATAGTTCTTTGCCTAGTGTTCAATGTGATTGCTGTTATCATCTGTTGGGTTAGAGGAGGAGGTTCCAAAATATTTTTCCTTGCAGTCATCTATGCTCTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGACCCCTCTATCGGGCAATGAGGACAGATAGTGCCTTGAAGTTTGGTTGGTTTTTCCTGTTCTACATGTTCCATATTGGGTTTTGCATTATTGCGGCTATAGCTCCTCCAATTGTCTTTCAAGGAAAATCACTGACGGGCATTCTTGCTGCAATTGATGTCTTTTCTGACCATGCGGTGGTAGGGATATTCTACTTAATTGGGTTTGCCTTGTTTTGCTTAGAGACACTTCTAAGCTTTTGGGTACTCCAGAAAATATATGTGTATTTCAGGGGGCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

266

Amino Acids

30.11

Weight (kDa)

7.72

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	93 - 263	6.9e-61	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32050
fragaria_vesca	FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510
malus_domestica	MD00G1068600.v1.1 MD06G1023700.v1.1
prunus_persica	Prupe.5G024700_v2.0.a1 Prupe.5G024700_v2.0.a1
pyrus_communis	pycom06g01930 pycom16g25310
rosa_chinensis	RchiOBHm_Chr7g0212781
rosa_laevigata	RLG00000002869
rosa_multiflora	Rmu_sc0000394.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246560
rosa_rugosa	Rorug07G0136600 Rorug07G0136700
rosa_samantha	Rh7AG268200 Rh7BG263600 Rh7CG287200 Rh7DG276300
rosa_wichuraiana	Rw7G023170 Rw7G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	691
AciI	CCGC	2 cut(s)	608, 689
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	3 cut(s)	336, 512, 759
AfiI	CCNNNNNNNGG	4 cut(s)	272, 525, 526, 691
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	4 cut(s)	32, 403, 553, 635
AjnI	CCWGG	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	4 cut(s)	184, 257, 617, 750
AluI	AGCT	4 cut(s)	184, 257, 617, 750
Alw26I	GTCTC	1 cut(s)	731
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	188, 662
ApoI	RAATTY	1 cut(s)	327
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AsuHPI	GGTGA	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	792
BanI	GGYRCC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	200, 649
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	731
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	2 cut(s)	350, 612
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	3 cut(s)	189, 609, 663
BlsI	GCNGC	3 cut(s)	190, 610, 664
Bme1390I	CCNGG	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	11, 445
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	2 cut(s)	101, 115
BpmI	CTGGAG	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 525, 526, 691
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	4 cut(s)	272, 525, 526, 691
BseMI	GCAATG	1 cut(s)	537
BseRI	GAGGAG	3 cut(s)	450, 453, 609
BseSI	GKGCMC	1 cut(s)	792
BseXI	GCAGC	2 cut(s)	200, 649
BshFI	GGCC	1 cut(s)	286
BshNI	GGYRCC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	4 cut(s)	272, 525, 526, 691
BsmAI	GTCTC	1 cut(s)	731
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	654
BsnI	GGCC	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	608, 689
BspANI	GGCC	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	11, 445
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	537
BsrGI	TGTACA	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	133, 354
Bst6I	CTCTTC	2 cut(s)	33, 229
BstAUI	TGTACA	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	165, 733, 746
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 614
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	2 cut(s)	341, 583
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	2 cut(s)	350, 612
BstSLI	GKGCMC	1 cut(s)	792
BstV1I	GCAGC	2 cut(s)	200, 649
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	644
Cac8I	GCNNGC	1 cut(s)	186
Csp6I	GTAC	3 cut(s)	335, 511, 758
CviAII	CATG	5 cut(s)	122, 311, 338, 580, 686
CviJI	RGCY	9 cut(s)	184, 191, 257, 286, 349, 362, 611, 617, 750
CviKI_1	RGCY	9 cut(s)	184, 191, 257, 286, 349, 362, 611, 617, 750
CviQI	GTAC	3 cut(s)	335, 511, 758
DdeI	CTNAG	3 cut(s)	165, 733, 746
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	33, 229
EarI	CTCTTC	2 cut(s)	33, 229
Eco32I	GATATC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	226
FaeI	CATG	5 cut(s)	125, 314, 341, 583, 689
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	5 cut(s)	121, 310, 337, 579, 685
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	3 cut(s)	189, 609, 663
Fsp4HI	GCNGC	3 cut(s)	189, 609, 663
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	3 cut(s)	189, 609, 663
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	1 cut(s)	286
Hin1II	CATG	5 cut(s)	125, 314, 341, 583, 689
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	5 cut(s)	4, 79, 149, 161, 242
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	97, 300, 682
Hpy188III	TCNNGA	2 cut(s)	208, 763
HpyCH4III	ACNGT	2 cut(s)	133, 354
HpyCH4V	TGCA	7 cut(s)	128, 188, 251, 368, 464, 600, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 614
HpyF3I	CTNAG	3 cut(s)	165, 733, 746
Hsp92II	CATG	5 cut(s)	125, 314, 341, 583, 689
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	7 cut(s)	178, 205, 243, 345, 584, 769, 776
Lsp1109I	GCAGC	2 cut(s)	200, 649
LweI	GCATC	2 cut(s)	101, 115
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	4 cut(s)	44, 47, 50, 246
MfeI	CAATTG	2 cut(s)	624, 666
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	5 cut(s)	280, 327, 624, 666, 711
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	2 cut(s)	624, 666
Mva1269I	GAATGC	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	197, 614
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	5 cut(s)	125, 314, 341, 583, 689
NlaIV	GGNNCC	2 cut(s)	11, 445
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	2 cut(s)	341, 583
NspV	TTCGAA	1 cut(s)	62
PciI	ACATGT	1 cut(s)	579
PctI	GAATGC	1 cut(s)	654
PfeI	GAWTC	4 cut(s)	4, 79, 161, 242
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	3 cut(s)	190, 610, 664
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PscI	ACATGT	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	11, 445
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	3 cut(s)	336, 512, 759
RsaNI	GTAC	3 cut(s)	335, 511, 758
SaqAI	TTAA	1 cut(s)	710
SatI	GCNGC	3 cut(s)	189, 609, 663
Sau3AI	GATC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	792
SetI	ASST	9 cut(s)	45, 51, 103, 186, 259, 382, 445, 619, 752
SfaNI	GCATC	2 cut(s)	101, 115
SfcI	CTRYAG	2 cut(s)	350, 612
SfuI	TTCGAA	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	280, 327, 624, 666, 711
SsiI	CCGC	2 cut(s)	608, 689
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	133, 354
TaqI	TCGA	2 cut(s)	45, 62
TasI	AATT	5 cut(s)	280, 327, 624, 666, 711
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	4 cut(s)	4, 79, 161, 242
Tru1I	TTAA	1 cut(s)	710
Tru9I	TTAA	1 cut(s)	710
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	2 cut(s)	188, 662
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	17, 339
TspGWI	ACGGA	2 cut(s)	91, 279
TspRI	CASTG	1 cut(s)	651
Van91I	CCANNNNNTGG	1 cut(s)	691
XapI	RAATTY	1 cut(s)	327
XceI	RCATGY	2 cut(s)	341, 583
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.