Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007929

Physical Location & Seq

Genomic Coordinates Reverse (-)

2926730 .. 2934163

Gene Structure 7434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1023700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAATCGCCACCACGACCCCAACCCATTTGACGAAGAAGAAGTCCAGGTCGAGGTCAATCCTTTTTCGAATGGTGCTGCTGCTCCTATGTCAAAGTCGCGTGTTCCACCAGTGTCATCTGAACATCTGGGTTTTGGGCAGAAACATGATGCCACAGTCGATATACCGTTGGATACCATGAATGATTCTAAGCAAAAGGCAAAAGAGCTTGCAACTTGGGAAGCGGATCTCAAGAAGCGAGAAAAGGATATTAAACGGAGAGAAGATTCTGTTGCAAAAGCTGGTGTCCCTGTTGATGATAGAAATTGGCCTCCTTTTTTTCCAATTATTCACCATGATATAGCTAATGAAATACCAATACATGCTCAAAGGCTACAATATATGGCTTTTGCAAGTTGGCTAGGCATAGTTCTTTGCCTATTTTTTAATGTGATTGCGATTATTGTCTGTTGGATTAGAGGCGGGGGTGTTAAAATATTTTTGCTTGCAACGATCTATGCTCTAATGGGATGCCCTCTTTCATATGTTCTTTGGTACAGGCCTCTCTATCGTGCAATGAGAACAGATAGTGCCCTGAAGTTTGGTTGGTTTTTCATGTTCTATATGCTCCACATTGGATTTTGTATTGTTGCGGCGATAGCTCCTCCAATTGTCTTTAATGGGAAATCATTGACGGGAATTCTTTCGGCAATTGATGTTTTCTCTGATCATGTGGTGGTAGGGATATTCTACTTAACTGGGTTTGCATTGTTTTGCTTGGAGTCTCTTCTAAGCTTATGGGTACTTCAGAAAGTATACATGTATTTCAGGGGGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

274

Amino Acids

31.02

Weight (kDa)

7.69

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	101 - 271	5.2e-60	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32050
fragaria_vesca	FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510 FvH4_5g23510
malus_domestica	MD00G1068600.v1.1 MD06G1023700.v1.1
prunus_persica	Prupe.5G024700_v2.0.a1 Prupe.5G024700_v2.0.a1
pyrus_communis	pycom06g01930 pycom16g25310
rosa_chinensis	RchiOBHm_Chr7g0212781
rosa_laevigata	RLG00000002869
rosa_multiflora	Rmu_sc0000394.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246560
rosa_rugosa	Rorug07G0136600 Rorug07G0136700
rosa_samantha	Rh7AG268200 Rh7BG263600 Rh7CG287200 Rh7DG276300
rosa_wichuraiana	Rw7G023170 Rw7G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	795
AccII	CGCG	1 cut(s)	100
AciI	CCGC	3 cut(s)	224, 462, 632
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	678
AcuI	CTGAAG	2 cut(s)	596, 770
AfaI	GTAC	2 cut(s)	536, 783
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	798
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	5 cut(s)	208, 281, 344, 641, 774
AluI	AGCT	5 cut(s)	208, 281, 344, 641, 774
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	308, 539
ApeKI	GCWGC	2 cut(s)	77, 80
ApoI	RAATTY	1 cut(s)	678
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
Asp700I	GAANNNNTTC	1 cut(s)	682
AsuHPI	GGTGA	1 cut(s)	323
AsuII	TTCGAA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	574
BbvI	GCAGC	2 cut(s)	64, 67
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	706
BcoDI	GTCTC	1 cut(s)	768
BfaI	CTAG	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	3 cut(s)	78, 81, 633
BlsI	GCNGC	3 cut(s)	79, 82, 634
Bme1390I	CCNGG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	139, 500
BmuI	ACTGGG	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	110, 742
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	515
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	561
BseNI	ACTGG	2 cut(s)	110, 742
BseRI	GAGGAG	1 cut(s)	633
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	2 cut(s)	64, 67
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	310, 541
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	310, 541
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	3 cut(s)	226, 492, 706
BspACI	CCGC	3 cut(s)	224, 462, 632
BspANI	GGCC	2 cut(s)	310, 541
BspFNI	CGCG	1 cut(s)	100
BspPI	GGATC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	110, 742
BssMI	GATC	3 cut(s)	226, 492, 706
BssNAI	GTATAC	1 cut(s)	796
Bst1107I	GTATAC	1 cut(s)	796
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	157, 168
Bst6I	CTCTTC	1 cut(s)	771
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	210, 486
BstDEI	CTNAG	2 cut(s)	189, 770
BstF5I	GGATG	1 cut(s)	515
BstFNI	CGCG	1 cut(s)	100
BstKTI	GATC	3 cut(s)	229, 495, 709
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	3 cut(s)	226, 492, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	365, 802
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	64, 67
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BstZ17I	GTATAC	1 cut(s)	796
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	310, 541
BtsCI	GGATG	1 cut(s)	515
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	210, 486
Csp6I	GTAC	2 cut(s)	535, 782
CviAII	CATG	7 cut(s)	146, 178, 335, 362, 595, 710, 799
CviQI	GTAC	2 cut(s)	535, 782
DdeI	CTNAG	2 cut(s)	189, 770
DpnI	GATC	3 cut(s)	228, 494, 708
DpnII	GATC	3 cut(s)	226, 492, 706
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco147I	AGGCCT	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	596, 770
EcoRI	GAATTC	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	7 cut(s)	149, 181, 338, 365, 598, 713, 802
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	7 cut(s)	145, 177, 334, 361, 594, 709, 798
FauI	CCCGC	1 cut(s)	455
FauNDI	CATATG	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	3 cut(s)	78, 81, 633
FokI	GGATG	1 cut(s)	522
Fsp4HI	GCNGC	3 cut(s)	78, 81, 633
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	3 cut(s)	78, 81, 633
HaeIII	GGCC	2 cut(s)	310, 541
Hin1II	CATG	7 cut(s)	149, 181, 338, 365, 598, 713, 802
HindIII	AAGCTT	1 cut(s)	772
HinfI	GANTC	4 cut(s)	4, 185, 266, 761
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	3 cut(s)	121, 706, 789
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	796
HpyCH4III	ACNGT	2 cut(s)	157, 168
HpyCH4V	TGCA	6 cut(s)	212, 275, 392, 488, 554, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	2 cut(s)	189, 770
Hsp92II	CATG	7 cut(s)	149, 181, 338, 365, 598, 713, 802
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	3 cut(s)	226, 492, 706
LmnI	GCTCC	3 cut(s)	88, 612, 646
Lsp1109I	GCAGC	2 cut(s)	64, 67
LweI	GCATC	2 cut(s)	139, 500
MaeI	CTAG	1 cut(s)	401
MalI	GATC	3 cut(s)	228, 494, 708
MboI	GATC	3 cut(s)	226, 492, 706
MboII	GAAGA	4 cut(s)	47, 50, 275, 758
MfeI	CAATTG	2 cut(s)	648, 690
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	5 cut(s)	304, 324, 648, 678, 690
MlyI	GAGTC	1 cut(s)	770
MmeI	TCCRAC	2 cut(s)	150, 431
MnlI	CCTC	6 cut(s)	46, 321, 452, 525, 552, 654
MroXI	GAANNNNTTC	1 cut(s)	682
MseI	TTAA	5 cut(s)	252, 426, 471, 657, 734
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	2 cut(s)	648, 690
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	3 cut(s)	226, 492, 706
NlaIII	CATG	7 cut(s)	149, 181, 338, 365, 598, 713, 802
NspI	RCATGY	2 cut(s)	365, 802
NspV	TTCGAA	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	541
PciI	ACATGT	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	4, 185, 266
PkrI	GCNGC	3 cut(s)	79, 82, 634
PleI	GAGTC	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	769
PscI	ACATGT	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	536, 783
RsaNI	GTAC	2 cut(s)	535, 782
SaqAI	TTAA	5 cut(s)	252, 426, 471, 657, 734
SatI	GCNGC	3 cut(s)	78, 81, 633
Sau3AI	GATC	3 cut(s)	226, 492, 706
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	574
SetI	ASST	7 cut(s)	51, 57, 210, 283, 346, 643, 776
SfaNI	GCATC	2 cut(s)	139, 500
SfuI	TTCGAA	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	5 cut(s)	304, 324, 648, 678, 690
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	3 cut(s)	224, 462, 632
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	1 cut(s)	401
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	157, 168
TaqI	TCGA	3 cut(s)	51, 68, 159
TasI	AATT	5 cut(s)	304, 324, 648, 678, 690
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	4, 185, 266
Tru1I	TTAA	5 cut(s)	252, 426, 471, 657, 734
Tru9I	TTAA	5 cut(s)	252, 426, 471, 657, 734
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	2 cut(s)	77, 80
TspDTI	ATGAA	5 cut(s)	17, 194, 363, 510, 583
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	117
XapI	RAATTY	1 cut(s)	678
XceI	RCATGY	2 cut(s)	365, 802
XmiI	GTMKAC	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	682
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.