FvH4_5g23960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012472
Physical Location & Seq
Forward (+)
15247036 .. 15252759
5724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23960.t1

Sequence Viewer

Length: 873 bp
ATGGATTTGTCTCAGAAGGGCTACCTAATCCTGCGGTGGTCTCTCGCTCTCCTTTTCCCTATCGTCGCTTTCTCTTCGCTCTCACTTTTGCTCATCTCAGTCACAGTCTTCGTCTCCAATTCCTCGGTTCCCGGCCCCATTTCGGTTTCCTCTCAGTGCCGGATCGTCTCCAGCAGTGTTGATCTTAAGTCAGCCAAGGTTTGCGAGCTGGGGTTGTTGAATTACAAGGCCAAGAATGTGTTTTATCCTTTAGAAGGGAGAAGGTTTCGATGTCGTTACGATTACTATTGGGCTTCTGTTTTTAAGGTGGAGTACCAAGATCTGTCTTCTGGTCAAACTCGTGTTGCACTAGCTGAGGCTCCAAGTGAGGCTCTTCCTCTTAATTGCAGACCTAATTTTGGTGCTGCATGGTTGACTAAAGACAAATTCAAGGTCAATAAGACATATGACTGCTGGTACACGTATGGTGTTTCTCAAGTAAGCTTATATGAGGATGGTTTCTTCAGTTGCCAAGCTAAAGATCCGTCTACATTTGAAATGATAAGAAGATATTTCATCCTGTTGACAAAGATCTTACAGTCCTGGTTTCTAAGCCAGGAACCAGCCATGTTTTGGAGGTGGGAAACCATGGTTGGAGTTGTTACTGGTTTTTCAACTGCAATGATCTCGATTACCTTCATTAGACTCATGCAGCTCTTGAAATCCCAATTGCCTCAAATCTCTGCTAGAAGAATGCTTACACAGTCGGTCTCTGCGGTCCTCTTCAGGCGCACTTGTTTTCTCGTGGCATACATCTCTTTTATGGGTTGGTTGACTATTGAGTATGGGAAAAGGCTTGGCCTGCCCGAGATTCTCACCCTTCTTAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.22

Weight (kDa)

9.41

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 612
AccI GTMKAC 1 cut(s) 527
AciI CCGC 2 cut(s) 34, 755
AclWI GGATC 2 cut(s) 170, 515
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 2 cut(s) 487, 748
AfaI GTAC 2 cut(s) 314, 458
AfiI CCNNNNNNNGG 5 cut(s) 142, 254, 398, 612, 865
AflII CTTAAG 2 cut(s) 185, 863
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 5 cut(s) 220, 430, 536, 654, 700
AjnI CCWGG 2 cut(s) 581, 594
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AluBI AGCT 5 cut(s) 208, 353, 483, 515, 694
AluI AGCT 5 cut(s) 208, 353, 483, 515, 694
Alw26I GTCTC 5 cut(s) 15, 45, 118, 172, 754
AlwI GGATC 2 cut(s) 170, 515
Ama87I CYCGRG 1 cut(s) 845
AoxI GGCC 3 cut(s) 133, 228, 838
ApeKI GCWGC 2 cut(s) 404, 691
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
AspLEI GCGC 1 cut(s) 771
AspS9I GGNCC 2 cut(s) 134, 757
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 845
AvaII GGWCC 1 cut(s) 757
BarI GAAGNNNNNNTAC 2 cut(s) 721, 753
BauI CACGAG 2 cut(s) 339, 782
BbsI GAAGAC 2 cut(s) 100, 318
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 391, 703
BccI CCATC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 648, 682
BciT130I CCWGG 2 cut(s) 583, 596
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 5 cut(s) 15, 45, 118, 172, 754
BfaI CTAG 2 cut(s) 350, 726
BfrI CTTAAG 2 cut(s) 185, 863
BglII AGATCT 2 cut(s) 319, 570
BisI GCNGC 2 cut(s) 405, 692
BlsI GCNGC 2 cut(s) 406, 693
Bme1390I CCNGG 3 cut(s) 132, 583, 596
Bme18I GGWCC 1 cut(s) 757
BmeT110I CYCGRG 1 cut(s) 845
BmgT120I GGNCC 2 cut(s) 134, 757
BmiI GGNNCC 4 cut(s) 129, 136, 360, 600
BmrFI CCNGG 3 cut(s) 132, 583, 596
BpiI GAAGAC 2 cut(s) 100, 318
BpmI CTGGAG 1 cut(s) 154
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 462
BsaI GGTCTC 2 cut(s) 45, 754
BsaJI CCNNGG 3 cut(s) 123, 195, 627
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 254, 398, 612, 865
Bse1I ACTGG 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 2 cut(s) 583, 596
BseDI CCNNGG 3 cut(s) 123, 195, 627
BseGI GGATG 2 cut(s) 499, 555
BseLI CCNNNNNNNGG 5 cut(s) 142, 254, 398, 612, 865
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 4 cut(s) 26, 111, 167, 345
BseNI ACTGG 1 cut(s) 649
BseXI GCAGC 2 cut(s) 391, 703
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 3 cut(s) 135, 230, 840
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 2 cut(s) 132, 160
BslI CCNNNNNNNGG 5 cut(s) 142, 254, 398, 612, 865
BsmAI GTCTC 5 cut(s) 15, 45, 118, 172, 754
BsmBI CGTCTC 2 cut(s) 118, 172
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 3 cut(s) 135, 230, 840
Bso31I GGTCTC 2 cut(s) 45, 754
BsoBI CYCGRG 1 cut(s) 845
Bsp143I GATC 6 cut(s) 162, 181, 319, 520, 570, 663
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 2 cut(s) 34, 755
BspANI GGCC 3 cut(s) 135, 230, 840
BspCNI CTCAG 4 cut(s) 25, 110, 166, 346
BspLI GGNNCC 4 cut(s) 129, 136, 360, 600
BspPI GGATC 2 cut(s) 170, 515
BspQI GCTCTTC 1 cut(s) 378
BspTI CTTAAG 2 cut(s) 185, 863
BspTNI GGTCTC 2 cut(s) 45, 754
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 1 cut(s) 649
BssECI CCNNGG 3 cut(s) 123, 195, 627
BssMI GATC 6 cut(s) 162, 181, 319, 520, 570, 663
BssSI CACGAG 2 cut(s) 339, 782
BssT1I CCWWGG 2 cut(s) 195, 627
Bst2BI CACGAG 2 cut(s) 339, 782
Bst2UI CCWGG 2 cut(s) 583, 596
Bst4CI ACNGT 3 cut(s) 106, 579, 744
Bst6I CTCTTC 3 cut(s) 79, 378, 767
BstAFI CTTAAG 2 cut(s) 185, 863
BstBAI YACGTR 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 206, 842
BstDEI CTNAG 5 cut(s) 12, 97, 153, 354, 590
BstDSI CCRYGG 1 cut(s) 627
BstENI CCTNNNNNAGG 2 cut(s) 252, 863
BstF5I GGATG 2 cut(s) 499, 555
BstHHI GCGC 1 cut(s) 771
BstKTI GATC 6 cut(s) 165, 184, 322, 523, 573, 666
BstMAI GTCTC 5 cut(s) 15, 45, 118, 172, 754
BstMBI GATC 6 cut(s) 162, 181, 319, 520, 570, 663
BstMWI GCNNNNNNNGC 1 cut(s) 841
BstNI CCWGG 2 cut(s) 583, 596
BstSCI CCNGG 3 cut(s) 130, 581, 594
BstV1I GCAGC 2 cut(s) 391, 703
BstV2I GAAGAC 2 cut(s) 100, 318
BstX2I RGATCY 3 cut(s) 319, 520, 570
BstYI RGATCY 3 cut(s) 319, 520, 570
BsuRI GGCC 3 cut(s) 135, 230, 840
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 2 cut(s) 499, 555
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 161, 181
Cac8I GCNNGC 2 cut(s) 206, 842
CfoI GCGC 1 cut(s) 771
Cfr13I GGNCC 2 cut(s) 134, 757
Csp6I GTAC 2 cut(s) 313, 457
CviAII CATG 4 cut(s) 408, 607, 628, 688
CviQI GTAC 2 cut(s) 313, 457
DdeI CTNAG 5 cut(s) 12, 97, 153, 354, 590
DpnI GATC 6 cut(s) 164, 183, 321, 522, 572, 665
DpnII GATC 6 cut(s) 162, 181, 319, 520, 570, 663
Eam1104I CTCTTC 3 cut(s) 79, 378, 767
EarI CTCTTC 3 cut(s) 79, 378, 767
Eco130I CCWWGG 2 cut(s) 195, 627
Eco31I GGTCTC 2 cut(s) 45, 754
Eco47I GGWCC 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 487, 748
Eco88I CYCGRG 1 cut(s) 845
EcoNI CCTNNNNNAGG 2 cut(s) 252, 863
EcoRII CCWGG 2 cut(s) 581, 594
EcoT14I CCWWGG 2 cut(s) 195, 627
ErhI CCWWGG 2 cut(s) 195, 627
Esp3I CGTCTC 2 cut(s) 118, 172
FaeI CATG 4 cut(s) 411, 610, 631, 691
FatI CATG 4 cut(s) 407, 606, 627, 687
FauNDI CATATG 1 cut(s) 445
FblI GTMKAC 1 cut(s) 527
Fnu4HI GCNGC 2 cut(s) 405, 692
FokI GGATG 2 cut(s) 506, 542
Fsp4HI GCNGC 2 cut(s) 405, 692
FspBI CTAG 2 cut(s) 350, 726
GlaI GCGC 1 cut(s) 770
GluI GCNGC 2 cut(s) 405, 692
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 3 cut(s) 135, 230, 840
HapII CCGG 2 cut(s) 132, 160
HhaI GCGC 1 cut(s) 771
Hin1II CATG 4 cut(s) 411, 610, 631, 691
Hin6I GCGC 1 cut(s) 769
HinP1I GCGC 1 cut(s) 769
HincII GTYRAC 3 cut(s) 414, 564, 813
HindII GTYRAC 3 cut(s) 414, 564, 813
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 2 cut(s) 684, 850
HpaII CCGG 2 cut(s) 132, 160
HphI GGTGA 1 cut(s) 847
Hpy166II GTNNAC 5 cut(s) 414, 459, 528, 564, 813
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 667, 697
Hpy8I GTNNAC 5 cut(s) 414, 459, 528, 564, 813
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 5 cut(s) 10, 248, 255, 685, 869
HpyCH4III ACNGT 3 cut(s) 106, 579, 744
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 5 cut(s) 347, 387, 407, 659, 691
HpyF10VI GCNNNNNNNGC 1 cut(s) 841
HpyF3I CTNAG 5 cut(s) 12, 97, 153, 354, 590
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 4 cut(s) 411, 610, 631, 691
HspAI GCGC 1 cut(s) 769
Kzo9I GATC 6 cut(s) 162, 181, 319, 520, 570, 663
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 2 cut(s) 391, 703
MaeI CTAG 2 cut(s) 350, 726
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 3 cut(s) 100, 275, 640
MalI GATC 6 cut(s) 164, 183, 321, 522, 572, 665
MboI GATC 6 cut(s) 162, 181, 319, 520, 570, 663
MboII GAAGA 8 cut(s) 66, 100, 318, 365, 493, 558, 741, 754
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 3 cut(s) 319, 520, 570
MluCI AATT 6 cut(s) 118, 220, 382, 394, 425, 707
MlyI GAGTC 1 cut(s) 678
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 9 cut(s) 133, 160, 349, 361, 387, 484, 609, 723, 770
MseI TTAA 4 cut(s) 186, 303, 381, 864
MspCI CTTAAG 2 cut(s) 185, 863
MspI CCGG 2 cut(s) 132, 160
MspR9I CCNGG 3 cut(s) 132, 583, 596
MunI CAATTG 1 cut(s) 707
Mva1269I GAATGC 1 cut(s) 738
MvaI CCWGG 2 cut(s) 583, 596
MwoI GCNNNNNNNGC 1 cut(s) 841
NciI CCSGG 1 cut(s) 132
NcoI CCATGG 1 cut(s) 627
NdeI CATATG 1 cut(s) 445
NdeII GATC 6 cut(s) 162, 181, 319, 520, 570, 663
NlaIII CATG 4 cut(s) 411, 610, 631, 691
NlaIV GGNNCC 4 cut(s) 129, 136, 360, 600
NmuCI GTSAC 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 378
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 1 cut(s) 850
PflMI CCANNNNNTGG 1 cut(s) 612
PkrI GCNGC 2 cut(s) 406, 693
PleI GAGTC 1 cut(s) 678
PpsI GAGTC 1 cut(s) 678
Ppu21I YACGTR 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 581, 594
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 581, 594
PspN4I GGNNCC 4 cut(s) 129, 136, 360, 600
PspPI GGNCC 2 cut(s) 134, 757
PsuI RGATCY 3 cut(s) 319, 520, 570
RsaI GTAC 2 cut(s) 314, 458
RsaNI GTAC 2 cut(s) 313, 457
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 4 cut(s) 186, 303, 381, 864
SatI GCNGC 2 cut(s) 405, 692
Sau3AI GATC 6 cut(s) 162, 181, 319, 520, 570, 663
Sau96I GGNCC 2 cut(s) 134, 757
SchI GAGTC 1 cut(s) 678
ScrFI CCNGG 3 cut(s) 132, 583, 596
SinI GGWCC 1 cut(s) 757
SmlI CTYRAG 3 cut(s) 185, 474, 863
SmoI CTYRAG 3 cut(s) 185, 474, 863
Sse9I AATT 6 cut(s) 118, 220, 382, 394, 425, 707
SsiI CCGC 2 cut(s) 34, 755
SspMI CTAG 2 cut(s) 350, 726
StyD4I CCNGG 3 cut(s) 130, 581, 594
StyI CCWWGG 2 cut(s) 195, 627
TaaI ACNGT 3 cut(s) 106, 579, 744
TaiI ACGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 268, 668
TaqII GACCGA 1 cut(s) 736
TasI AATT 6 cut(s) 118, 220, 382, 394, 425, 707
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 4 cut(s) 186, 303, 381, 864
Tru9I TTAA 4 cut(s) 186, 303, 381, 864
TscAI CASTG 2 cut(s) 161, 181
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 404, 691
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 544, 667
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 2 cut(s) 161, 181
Van91I CCANNNNNTGG 1 cut(s) 612
Vha464I CTTAAG 2 cut(s) 185, 863
VpaK11BI GGWCC 1 cut(s) 757
XagI CCTNNNNNAGG 2 cut(s) 252, 863
XapI RAATTY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 609
XmiI GTMKAC 1 cut(s) 527
XspI CTAG 2 cut(s) 350, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.