Rh7DG281100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012472
Physical Location & Seq
Forward (+)
30368939 .. 30374446
5508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG281100.1

Sequence Viewer

Length: 660 bp
ATGGATTCCCAGGACGTGTCTCAGAAGAAGGGCTATCTGATTCTGCGCTGGTCTCTCGCTCTCCTTTTCCCTATCGTCGCTTTCTCTTCTCTCTCACTTTTCCTCGTCTTAGTCACAGTTTTCGTCTCCAATTCTTCGGTTTCCGTCCCCATTTCGGTTTCGTCTCAGTGCAGGGTCGTCTCCAGCAGTGTTGATCTTAAGTCAGCCAAGGTTTGTGAGCTCGGATTGTTTAATTACAAAGCCAAGCATGTGTTTTATCCCTTAGAAGGAAGAAGGTTTCGATGTCGTTATGATTACTATTGGGCTTCTGTTTTTAAGGTGGAGTACCAAGATCAGTCTTCTGGTCAAACTCGGATTGCACTAGCTGAGGCTCCAAGTGAGGCTCTTCCTCTTAATTGCAGACCTAATTTTGGTGCTGCATGGTTGACCAAAGACAAATTCAAGGTCAATAAGACTTATGACTGCTGGTACACATATGGTGTTTCTCAAGTAAGCTTATATGATGATGGTTTCTTCAGTTGCCAAGCTAAAGATCCGTCTACATTTGAAATGATAAGAAGATATTTCATCCTGAATAAACAGTGGAAGAGTCGGCAACAATTTACAGTTCACAGTTGCCACTTGGGCATCCGGTTGTCGAAAAAGTGGAGAGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.26

Weight (kDa)

9.42

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 539
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 499
AfaI GTAC 2 cut(s) 326, 470
AfiI CCNNNNNNNGG 3 cut(s) 154, 266, 410
AflII CTTAAG 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 442, 548
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 9
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 4 cut(s) 220, 365, 495, 527
AluI AGCT 4 cut(s) 220, 365, 495, 527
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 5 cut(s) 24, 57, 130, 168, 184
AlwI GGATC 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
AspLEI GCGC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 403
BccI CCATC 1 cut(s) 500
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BfaI CTAG 1 cut(s) 362
BfrI CTTAAG 1 cut(s) 197
BglI GCCNNNNNGGC 1 cut(s) 624
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 9, 207
BsaWI WCCGGW 1 cut(s) 630
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 266, 410
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 9, 207
BseGI GGATG 2 cut(s) 567, 627
BseLI CCNNNNNNNGG 3 cut(s) 154, 266, 410
BseMII CTCAG 3 cut(s) 35, 179, 357
BseXI GCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 631
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 154, 266, 410
BsmAI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BsmBI CGTCTC 3 cut(s) 130, 168, 184
BsmFI GGGAC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 193, 331, 532
BspCNI CTCAG 3 cut(s) 34, 178, 358
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 1 cut(s) 527
BspQI GCTCTTC 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 9, 207
BssMI GATC 3 cut(s) 193, 331, 532
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 4 cut(s) 118, 582, 607, 614
Bst6I CTCTTC 3 cut(s) 91, 390, 581
BstAFI CTTAAG 1 cut(s) 197
BstDEI CTNAG 5 cut(s) 21, 109, 165, 262, 366
BstF5I GGATG 2 cut(s) 567, 627
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 3 cut(s) 196, 334, 535
BstMAI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BstMBI GATC 3 cut(s) 193, 331, 532
BstMWI GCNNNNNNNGC 1 cut(s) 624
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 567, 627
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 173, 193, 587
CfoI GCGC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 325, 469
CviAII CATG 2 cut(s) 248, 420
CviQI GTAC 2 cut(s) 325, 469
DdeI CTNAG 5 cut(s) 21, 109, 165, 262, 366
DpnI GATC 3 cut(s) 195, 333, 534
DpnII GATC 3 cut(s) 193, 331, 532
Eam1104I CTCTTC 3 cut(s) 91, 390, 581
EarI CTCTTC 3 cut(s) 91, 390, 581
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 499
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 3 cut(s) 130, 168, 184
FaeI CATG 2 cut(s) 251, 423
FaiI YATR 8 cut(s) 249, 291, 421, 459, 475, 477, 499, 501
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 247, 419
FauNDI CATATG 1 cut(s) 475
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 2 cut(s) 554, 614
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 166
HapII CCGG 1 cut(s) 631
HhaI GCGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 251, 423
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 3 cut(s) 5, 40, 589
HpaII CCGG 1 cut(s) 631
Hpy166II GTNNAC 4 cut(s) 426, 471, 540, 610
Hpy188I TCNGA 4 cut(s) 24, 39, 224, 354
Hpy188III TCNNGA 1 cut(s) 571
Hpy8I GTNNAC 4 cut(s) 426, 471, 540, 610
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 22, 260, 267
HpyCH4III ACNGT 4 cut(s) 118, 582, 607, 614
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 171, 359, 399, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 624
HpyF3I CTNAG 5 cut(s) 21, 109, 165, 262, 366
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 251, 423
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 193, 331, 532
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 8 cut(s) 23, 34, 157, 196, 327, 451, 584, 644
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 1 cut(s) 636
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 112
MalI GATC 3 cut(s) 195, 333, 534
MboI GATC 3 cut(s) 193, 331, 532
MboII GAAGA 9 cut(s) 37, 78, 126, 282, 330, 377, 505, 570, 598
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 6 cut(s) 130, 232, 394, 406, 437, 599
MlyI GAGTC 1 cut(s) 598
MnlI CCTC 5 cut(s) 113, 361, 373, 399, 644
MseI TTAA 4 cut(s) 198, 231, 315, 393
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 1 cut(s) 631
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 624
NdeI CATATG 1 cut(s) 475
NdeII GATC 3 cut(s) 193, 331, 532
NlaIII CATG 2 cut(s) 251, 423
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 5, 40
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 372
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 2 cut(s) 326, 470
RsaNI GTAC 2 cut(s) 325, 469
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 198, 231, 315, 393
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 3 cut(s) 193, 331, 532
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 197, 486
SmoI CTYRAG 2 cut(s) 197, 486
Sse9I AATT 6 cut(s) 130, 232, 394, 406, 437, 599
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 4 cut(s) 118, 582, 607, 614
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 280, 638
TasI AATT 6 cut(s) 130, 232, 394, 406, 437, 599
TfiI GAWTC 2 cut(s) 5, 40
Tru1I TTAA 4 cut(s) 198, 231, 315, 393
Tru9I TTAA 4 cut(s) 198, 231, 315, 393
TscAI CASTG 3 cut(s) 173, 193, 587
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 556
TspGWI ACGGA 2 cut(s) 133, 525
TspRI CASTG 3 cut(s) 173, 193, 587
Vha464I CTTAAG 1 cut(s) 197
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 539
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.