Prupe.5G020400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012472
Physical Location & Seq
Reverse (-)
2231493 .. 2237130
5638 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G020400.1

Sequence Viewer

Length: 885 bp
ATGGATTCTCAGGAGGTCTCTGAGAAGGGCAACATGGCCTATTTAATACTGCGGTGTTCTCTGGCTCTCGTTTTACCTATCGTTGCTATCTTTGCACTGTCACTTTTGGTCGGCTTCGTAGCCATTTTCGTCGCCAATTCCTCAATTCCTAGCCCAATTTCTGTGTCCTCTCAGTGCAGGATCCTCTCCAGCAGTGTTGATCTTAAGTCATCTAAGGTGTGTGAGCTTGGACTGTTCAATTACAAAGCCAAGCACGTGTTTTATCCTTTTGAAGGAAGAAGATTTCGATGTCGTTATGATTACTATTGGGCTTCAATTTTTAAGGTGGAATACAAAGATCAGTCTTCTGGTCAGACTCAGCTTGCATTGGCTGAGGCTCCAAATGAGGCCCTTCCTCTTGATTGCAGACCTAATTTTGGTGCTGCATGGTTGACCAAAGATAAGTTCAAGGTCAATGAAACTTATGACTGTTGGTACACATATGGCATTTCCAAAGTAAGCTTATATCATGATGGTTTCTTCAGTTGCCAAGCTAAAGATCCGTCTACCTTTGAGATGATTAGAAGATATTTCATCCTTGCGACGAAGATTTTACACTCCTGGTTTGTCGCCCAGGAACGAGCGGGGTTTTGGAGGTGGGAAACCGTAGCTGGAGTTATTGCTGGTTTTTCAACTTCATTAATCTCCATAAGCTTTATTAGACTCCTGCAACAAATGAAATCTCGGTTGCCTCAACTTTTTGCTGCAAGAGTGCTTCCTCTCTATATGATCCGCTTCAGGCGCACTTGTTTTCTTGTGGCATACATCTCTTTTATGAGTTGGCTGGTTATCCAGTATGGGAAAAGGCTTGGCCTCCTGGAGATCATCACTCTTCTTAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.78

Weight (kDa)

9.45

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 623
AccI GTMKAC 1 cut(s) 545
AciI CCGC 3 cut(s) 52, 623, 772
AclWI GGATC 4 cut(s) 175, 188, 533, 763
AcuI CTGAAG 2 cut(s) 505, 760
AcvI CACGTG 1 cut(s) 256
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 2 cut(s) 272, 416
AflII CTTAAG 2 cut(s) 203, 875
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 5 cut(s) 238, 272, 315, 448, 672
AjnI CCWGG 3 cut(s) 599, 612, 855
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 6 cut(s) 226, 361, 501, 533, 650, 693
AluI AGCT 6 cut(s) 226, 361, 501, 533, 650, 693
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 4 cut(s) 175, 188, 533, 763
AoxI GGCC 3 cut(s) 36, 387, 850
ApeKI GCWGC 2 cut(s) 422, 743
AseI ATTAAT 1 cut(s) 680
AspLEI GCGC 1 cut(s) 783
AspS9I GGNCC 1 cut(s) 388
BamHI GGATCC 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 409, 730
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 3 cut(s) 601, 614, 857
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 150
BfrI CTTAAG 2 cut(s) 203, 875
BisI GCNGC 2 cut(s) 423, 744
BlsI GCNGC 2 cut(s) 424, 745
Bme1390I CCNGG 3 cut(s) 601, 614, 857
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 2 cut(s) 182, 378
BmrFI CCNGG 3 cut(s) 601, 614, 857
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 3 cut(s) 172, 672, 878
Bpu10I CCTNAGC 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 612
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 416
Bse1I ACTGG 1 cut(s) 832
BseBI CCWGG 3 cut(s) 601, 614, 857
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 272, 416
BseMII CTCAG 5 cut(s) 12, 23, 185, 363, 371
BseNI ACTGG 1 cut(s) 832
BseXI GCAGC 2 cut(s) 409, 730
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 3 cut(s) 38, 389, 852
BslI CCNNNNNNNGG 2 cut(s) 272, 416
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 3 cut(s) 38, 389, 852
Bso31I GGTCTC 1 cut(s) 22
Bsp143I GATC 6 cut(s) 180, 199, 337, 538, 768, 861
BspACI CCGC 3 cut(s) 52, 623, 772
BspANI GGCC 3 cut(s) 38, 389, 852
BspCNI CTCAG 5 cut(s) 13, 22, 184, 364, 370
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 182, 378
BspPI GGATC 4 cut(s) 175, 188, 533, 763
BspTI CTTAAG 2 cut(s) 203, 875
BspTNI GGTCTC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 623
BsrI ACTGG 1 cut(s) 832
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 6 cut(s) 180, 199, 337, 538, 768, 861
Bst2UI CCWGG 3 cut(s) 601, 614, 857
Bst4CI ACNGT 4 cut(s) 99, 234, 470, 646
Bst6I CTCTTC 1 cut(s) 876
BstAFI CTTAAG 2 cut(s) 203, 875
BstBAI YACGTR 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 6 cut(s) 9, 21, 171, 213, 357, 372
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 573
BstHHI GCGC 1 cut(s) 783
BstKTI GATC 6 cut(s) 183, 202, 340, 541, 771, 864
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 6 cut(s) 180, 199, 337, 538, 768, 861
BstMWI GCNNNNNNNGC 2 cut(s) 92, 780
BstNI CCWGG 3 cut(s) 601, 614, 857
BstSCI CCNGG 3 cut(s) 599, 612, 855
BstV1I GCAGC 2 cut(s) 409, 730
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 2 cut(s) 180, 538
BstYI RGATCY 2 cut(s) 180, 538
BsuRI GGCC 3 cut(s) 38, 389, 852
BtsCI GGATG 1 cut(s) 573
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 3 cut(s) 95, 179, 199
Cac8I GCNNGC 1 cut(s) 363
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 783
Cfr13I GGNCC 1 cut(s) 388
Csp6I GTAC 1 cut(s) 475
CviAII CATG 3 cut(s) 34, 426, 509
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 6 cut(s) 9, 21, 171, 213, 357, 372
DpnI GATC 6 cut(s) 182, 201, 339, 540, 770, 863
DpnII GATC 6 cut(s) 180, 199, 337, 538, 768, 861
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
Eco31I GGTCTC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 505, 760
Eco72I CACGTG 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 3 cut(s) 599, 612, 855
FaeI CATG 3 cut(s) 37, 429, 512
FatI CATG 3 cut(s) 33, 425, 508
FauI CCCGC 1 cut(s) 616
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 1 cut(s) 545
Fnu4HI GCNGC 2 cut(s) 423, 744
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 2 cut(s) 423, 744
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 782
GluI GCNGC 2 cut(s) 423, 744
GsuI CTGGAG 3 cut(s) 172, 672, 878
HaeIII GGCC 3 cut(s) 38, 389, 852
HhaI GCGC 1 cut(s) 783
Hin1II CATG 3 cut(s) 37, 429, 512
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HindIII AAGCTT 2 cut(s) 499, 691
HinfI GANTC 3 cut(s) 5, 355, 702
Hpy166II GTNNAC 3 cut(s) 432, 477, 546
Hpy188I TCNGA 2 cut(s) 22, 354
Hpy188III TCNNGA 3 cut(s) 11, 398, 509
Hpy8I GTNNAC 3 cut(s) 432, 477, 546
Hpy99I CGWCG 2 cut(s) 134, 586
HpyAV CCTTC 3 cut(s) 19, 266, 401
HpyCH4III ACNGT 4 cut(s) 99, 234, 470, 646
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 7 cut(s) 95, 177, 365, 405, 425, 709, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 780
HpyF3I CTNAG 6 cut(s) 9, 21, 171, 213, 357, 372
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 37, 429, 512
HspAI GCGC 1 cut(s) 781
Kzo9I GATC 6 cut(s) 180, 199, 337, 538, 768, 861
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 2 cut(s) 409, 730
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 99
MalI GATC 6 cut(s) 182, 201, 339, 540, 770, 863
MbiI CCGCTC 1 cut(s) 623
MboI GATC 6 cut(s) 180, 199, 337, 538, 768, 861
MboII GAAGA 7 cut(s) 288, 291, 336, 511, 576, 598, 863
MflI RGATCY 2 cut(s) 180, 538
MluCI AATT 6 cut(s) 136, 144, 156, 238, 315, 412
MlyI GAGTC 2 cut(s) 349, 696
MseI TTAA 5 cut(s) 44, 204, 321, 680, 876
MspCI CTTAAG 2 cut(s) 203, 875
MspR9I CCNGG 3 cut(s) 601, 614, 857
MvaI CCWGG 3 cut(s) 601, 614, 857
MwoI GCNNNNNNNGC 2 cut(s) 92, 780
NdeI CATATG 1 cut(s) 481
NdeII GATC 6 cut(s) 180, 199, 337, 538, 768, 861
NlaIII CATG 3 cut(s) 37, 429, 512
NlaIV GGNNCC 2 cut(s) 182, 378
NmuCI GTSAC 1 cut(s) 99
PagI TCATGA 1 cut(s) 508
PfeI GAWTC 1 cut(s) 5
PfoI TCCNGGA 1 cut(s) 855
PkrI GCNGC 2 cut(s) 424, 745
PleI GAGTC 2 cut(s) 349, 696
PmaCI CACGTG 1 cut(s) 256
PmlI CACGTG 1 cut(s) 256
PpsI GAGTC 2 cut(s) 349, 696
Ppu21I YACGTR 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 680
Psp6I CCWGG 3 cut(s) 599, 612, 855
PspCI CACGTG 1 cut(s) 256
PspGI CCWGG 3 cut(s) 599, 612, 855
PspN4I GGNNCC 2 cut(s) 182, 378
PspPI GGNCC 1 cut(s) 388
PsuI RGATCY 2 cut(s) 180, 538
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SaqAI TTAA 5 cut(s) 44, 204, 321, 680, 876
SatI GCNGC 2 cut(s) 423, 744
Sau3AI GATC 6 cut(s) 180, 199, 337, 538, 768, 861
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 2 cut(s) 349, 696
ScrFI CCNGG 3 cut(s) 601, 614, 857
SmlI CTYRAG 2 cut(s) 203, 875
SmoI CTYRAG 2 cut(s) 203, 875
Sse9I AATT 6 cut(s) 136, 144, 156, 238, 315, 412
SsiI CCGC 3 cut(s) 52, 623, 772
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 599, 612, 855
TaaI ACNGT 4 cut(s) 99, 234, 470, 646
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 286
TasI AATT 6 cut(s) 136, 144, 156, 238, 315, 412
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 5 cut(s) 44, 204, 321, 680, 876
Tru9I TTAA 5 cut(s) 44, 204, 321, 680, 876
TscAI CASTG 3 cut(s) 102, 179, 199
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 2 cut(s) 422, 743
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 4 cut(s) 471, 562, 666, 731
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 3 cut(s) 102, 179, 199
Vha464I CTTAAG 2 cut(s) 203, 875
VspI ATTAAT 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 270
XmiI GTMKAC 1 cut(s) 545
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.