Rmu_sc0029136.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029136.1
OG0012472
Physical Location & Seq
Forward (+)
1300 .. 2002
703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029136.1_g000001.1.cds

Sequence Viewer

Length: 363 bp
atggattcccaggacgtgtctcagaagaagggctatctgattctgcgctggtctctcgctctccttttccctatcgtcgctttctcttctctctcacttttcctcgtcttagtcacagttttcgtctccaattcttcggtttccgtccccatttcggtttcgtctcagtgcaggatcgtctccagcagtgttgatcttaagtcagccaaggtttgtgagctcggattgttcaattacaaagccaagcatgtgttttatccattagaaggaagaaggtttcgatgtcgttatgattactattgggcttctgtttttaaggttacagcattttctctctactcttttaagcatgttttgtgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

9.54

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 154, 266
AflII CTTAAG 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 1 cut(s) 232
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 5 cut(s) 24, 57, 130, 168, 184
AlwI GGATC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BfrI CTTAAG 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 9, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 266
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 9, 207
BseLI CCNNNNNNNGG 2 cut(s) 154, 266
BseMII CTCAG 2 cut(s) 35, 179
BsgI GTGCAG 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 222
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 154, 266
BsmAI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BsmBI CGTCTC 3 cut(s) 130, 168, 184
BsmFI GGGAC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 174, 193
BspCNI CTCAG 2 cut(s) 34, 178
BspPI GGATC 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 9, 207
BssMI GATC 2 cut(s) 174, 193
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 91
BstAFI CTTAAG 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 21, 109, 165
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 2 cut(s) 177, 196
BstMAI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BstMBI GATC 2 cut(s) 174, 193
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 2 cut(s) 251, 353
BstSCI CCNGG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 173, 193
CfoI GCGC 1 cut(s) 48
CviAII CATG 2 cut(s) 248, 350
CviJI RGCY 5 cut(s) 33, 206, 220, 242, 305
CviKI_1 RGCY 5 cut(s) 33, 206, 220, 242, 305
DdeI CTNAG 3 cut(s) 21, 109, 165
DpnI GATC 2 cut(s) 176, 195
DpnII GATC 2 cut(s) 174, 193
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 3 cut(s) 130, 168, 184
FaeI CATG 2 cut(s) 251, 353
FaiI YATR 3 cut(s) 249, 291, 351
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 247, 349
FriOI GRGCYC 1 cut(s) 222
GlaI GCGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 166
HhaI GCGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 251, 353
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 2 cut(s) 5, 40
Hpy188I TCNGA 3 cut(s) 24, 39, 224
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 22, 260, 267
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 171
HpyF3I CTNAG 3 cut(s) 21, 109, 165
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 251, 353
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 174, 193
LpnPI CCDG 4 cut(s) 23, 34, 157, 196
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 112, 319
MalI GATC 2 cut(s) 176, 195
MboI GATC 2 cut(s) 174, 193
MboII GAAGA 4 cut(s) 37, 78, 126, 282
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 130, 232
MnlI CCTC 1 cut(s) 113
MseI TTAA 3 cut(s) 198, 315, 345
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NdeII GATC 2 cut(s) 174, 193
NlaIII CATG 2 cut(s) 251, 353
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 2 cut(s) 251, 353
PfeI GAWTC 2 cut(s) 5, 40
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 198, 315, 345
Sau3AI GATC 2 cut(s) 174, 193
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 222
SetI ASST 5 cut(s) 18, 213, 222, 278, 321
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 130, 232
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 280
TasI AATT 2 cut(s) 130, 232
TfiI GAWTC 2 cut(s) 5, 40
Tru1I TTAA 3 cut(s) 198, 315, 345
Tru9I TTAA 3 cut(s) 198, 315, 345
TscAI CASTG 2 cut(s) 173, 193
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 2 cut(s) 173, 193
Vha464I CTTAAG 1 cut(s) 197
XceI RCATGY 2 cut(s) 251, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.