Rh7AG273700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012472
Physical Location & Seq
Forward (+)
28595615 .. 28601402
5788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG273700.1

Sequence Viewer

Length: 636 bp
ATGGATTCCCAGGACGTCTCTCAGAAGAAGGGCTATCTGATTCTGCGCTGGTCTCTCGCTCTCCTTTTCCCTATCGTCGCTTTCTCTTCTCTCTCACTTTTCCTCGTCTTAGTCACAGTTTTCGTCTCCAATTCTTCGGTTTCTGTCCCCATTTCGGTTTCGTCTCAGTGCAGGATCGTCTCCAGCAGTGTTGATCTTAAGTCAGACAAGGTTTGTGAGCTCGGATTGTTCAATTACAAAGCCAAGCATGTGTTTTATCCATTAGAAGGAAGAAGGTTTCGATGTCGTTATGATTACTATTGGGCTTCTGTTTTTAAGGTGGAGTACCAAGATCAGTCTTCTGGTCAAACTCGGGTTGCACTAGCTGAGGCTCCAAGTGAGGCTCTTCCTCGTAATTGCAGACCTAATTTTGGTGCTGCATGGTTGACCAAAGACAAATTCAAGGTCAATAAGACTTATAACTGCTGGTACACATATGGTGTTTCTCAAGTAAGCTTATATGATGATGGTTTCTTCAGTTGCCAAGCTAAAGATCCGTCTACATTTGAAATGATAAGAAGATATTTCATCCTGTGTGATGGAAGAAAAAAAAGATCATTTGGTCAAGAGGGGATTGGTGGCACAAGCAAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.99

Weight (kDa)

9.29

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AatII GACGTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 539
AclWI GGATC 2 cut(s) 182, 527
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 499
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 326, 470
AfiI CCNNNNNNNGG 3 cut(s) 154, 266, 410
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 232, 442, 548
AjnI CCWGG 1 cut(s) 9
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 4 cut(s) 220, 365, 495, 527
AluI AGCT 4 cut(s) 220, 365, 495, 527
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 5 cut(s) 22, 57, 130, 168, 184
AlwI GGATC 2 cut(s) 182, 527
Ama87I CYCGRG 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
AspLEI GCGC 1 cut(s) 48
AvaI CYCGRG 1 cut(s) 351
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 500, 572
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 5 cut(s) 22, 57, 130, 168, 184
BfaI CTAG 1 cut(s) 362
BfrI CTTAAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 266, 410
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 567
BseLI CCNNNNNNNGG 3 cut(s) 154, 266, 410
BseMII CTCAG 3 cut(s) 35, 179, 357
BseXI GCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 154, 266, 410
BsmAI GTCTC 5 cut(s) 22, 57, 130, 168, 184
BsmBI CGTCTC 4 cut(s) 22, 130, 168, 184
BsmFI GGGAC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 5 cut(s) 174, 193, 331, 532, 593
BspCNI CTCAG 3 cut(s) 34, 178, 358
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 2 cut(s) 182, 527
BspQI GCTCTTC 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 5 cut(s) 174, 193, 331, 532, 593
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 91, 390
BstACI GRCGYC 1 cut(s) 15
BstAFI CTTAAG 1 cut(s) 197
BstDEI CTNAG 4 cut(s) 21, 109, 165, 366
BstF5I GGATG 1 cut(s) 567
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 5 cut(s) 177, 196, 334, 535, 596
BstMAI GTCTC 5 cut(s) 22, 57, 130, 168, 184
BstMBI GATC 5 cut(s) 174, 193, 331, 532, 593
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BtsCI GGATG 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 173, 193
CfoI GCGC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 325, 469
CviAII CATG 2 cut(s) 248, 420
CviJI RGCY 9 cut(s) 33, 220, 242, 305, 365, 371, 383, 495, 527
CviKI_1 RGCY 9 cut(s) 33, 220, 242, 305, 365, 371, 383, 495, 527
CviQI GTAC 2 cut(s) 325, 469
DdeI CTNAG 4 cut(s) 21, 109, 165, 366
DpnI GATC 5 cut(s) 176, 195, 333, 534, 595
DpnII GATC 5 cut(s) 174, 193, 331, 532, 593
Eam1104I CTCTTC 2 cut(s) 91, 390
EarI CTCTTC 2 cut(s) 91, 390
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 499
Eco88I CYCGRG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 222
Esp3I CGTCTC 4 cut(s) 22, 130, 168, 184
FaeI CATG 2 cut(s) 251, 423
FaiI YATR 8 cut(s) 249, 291, 421, 459, 475, 477, 499, 501
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 247, 419
FauNDI CATATG 1 cut(s) 475
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 1 cut(s) 554
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 166
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 2 cut(s) 251, 423
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 2 cut(s) 5, 40
Hpy166II GTNNAC 3 cut(s) 426, 471, 540
Hpy188I TCNGA 4 cut(s) 24, 39, 205, 224
Hpy188III TCNNGA 1 cut(s) 605
Hpy8I GTNNAC 3 cut(s) 426, 471, 540
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 22, 260, 267
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 171, 359, 399, 419
HpyF3I CTNAG 4 cut(s) 21, 109, 165, 366
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 2 cut(s) 251, 423
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 5 cut(s) 174, 193, 331, 532, 593
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 7 cut(s) 23, 34, 157, 196, 327, 451, 584
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 112
MalI GATC 5 cut(s) 176, 195, 333, 534, 595
MboI GATC 5 cut(s) 174, 193, 331, 532, 593
MboII GAAGA 9 cut(s) 37, 78, 126, 282, 330, 377, 505, 570, 594
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 5 cut(s) 130, 232, 394, 406, 437
MnlI CCTC 5 cut(s) 113, 361, 373, 399, 601
MseI TTAA 2 cut(s) 198, 315
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 475
NdeII GATC 5 cut(s) 174, 193, 331, 532, 593
NlaIII CATG 2 cut(s) 251, 423
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 5, 40
PkrI GCNGC 1 cut(s) 418
PsiI TTATAA 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 372
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 2 cut(s) 326, 470
RsaNI GTAC 2 cut(s) 325, 469
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 2 cut(s) 198, 315
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 5 cut(s) 174, 193, 331, 532, 593
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 222
SmlI CTYRAG 2 cut(s) 197, 486
SmoI CTYRAG 2 cut(s) 197, 486
Sse9I AATT 5 cut(s) 130, 232, 394, 406, 437
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 280
TasI AATT 5 cut(s) 130, 232, 394, 406, 437
TfiI GAWTC 2 cut(s) 5, 40
Tru1I TTAA 2 cut(s) 198, 315
Tru9I TTAA 2 cut(s) 198, 315
TscAI CASTG 2 cut(s) 173, 193
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 556
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 2 cut(s) 173, 193
Vha464I CTTAAG 1 cut(s) 197
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 539
XspI CTAG 1 cut(s) 362
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.