Rroxscaffold_3G00246030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012472
Physical Location & Seq
Reverse (-)
39115087 .. 39120335
5249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246030.1

Sequence Viewer

Length: 996 bp
ATGGATTCCCAGGACGTCTCTCAGAACAAGGGCTATCTGATTCTGCGCTGGTCACTCGCTCTCCTTTTCCCTATCGTCGCTTTCGCTTCTCTCTCACTTTTCCTCGTCTTAGTCACAGTTTTCGTCTCCAATTCTTCGGTTTCCGTCCCCATTTCGGTTTCGTCTCAGTGCACGATCGTCTCCAGCAGTGTTGATCTCAAGTCAGCCAAGGTTTGTGAGCTCGGATTGTTTAATTACAAAGCCAAGCATGTGTTTTATCCCTTAGAAGGAAGAAGGTTTCGATGTCGTTATGATTACTATTGGGCTTCTGTTTTTAAGGTGGAGTACCAAGATCAGTCTTCTGGTCAAACTCGGGTTGCACTAGCTGAGGCTCCAAGTGAGGCTCTTCCTCTTAATTGCAGACCTAATTTTGGTGCTGCATGGTTGACCAAAGACAAATTCAAGGTCAATAAGACTTATGACTGCTGGTACACATATGGTGTTTCTCAAGTAAGCTTATATGATGATGGTTTCTTCAGTTGCCAAGCTAAAGATCCGTCTACATTTGAAATGATAAGAAGATATTTCATGCTGATATTTCTGGGAAAGTGTTGGAAGAAAAAAAGATCTTGTGGTCAAGTGGGGATTGGTGGCACAAGCAAAAGGATAAAGGGGCATAGAACTGGTGTAGGTGGCAAGGAAGAGTCAACAAAGATCTTACGCTCCTGGTTTCTAAGCCAGGAACCAGCCCTGTATTGGAGGTGGGAAACCATAATTGGACTTGTTACTGGTTTTTCAACCGCATTGATCTCAATAAGTTTCTTTAAACTCATGCAACTCTTGAAATCTCAATTGCCTCAAATCTCTGCTAGAAGAATGCTTTCACAGTCAATCTCTGCGGTCCTCTTCAGGCGCACTTGTTTTCTCGTGGCATACATCTCTTTTATGGGTTGGTTGGCCATCGAGTATGGGAAAAGGCTTGGCCTGCCAGAGATTCTCACTCTTCTCAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

37.65

Weight (kDa)

9.6

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 539
AciI CCGC 2 cut(s) 780, 878
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 2 cut(s) 499, 871
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 326, 470
AfiI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 735
AgsI TTSAA 4 cut(s) 442, 548, 777, 823
AjnI CCWGG 3 cut(s) 9, 704, 717
AjuI GAANNNNNNNTTGG 4 cut(s) 422, 454, 738, 770
AluBI AGCT 4 cut(s) 220, 365, 495, 527
AluI AGCT 4 cut(s) 220, 365, 495, 527
Alw21I GWGCWC 2 cut(s) 173, 222
Alw26I GTCTC 4 cut(s) 22, 130, 168, 184
Alw44I GTGCAC 1 cut(s) 169
AlwI GGATC 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 2 cut(s) 936, 961
ApaLI GTGCAC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
Asp700I GAANNNNTTC 1 cut(s) 859
AspLEI GCGC 2 cut(s) 48, 894
AspS9I GGNCC 1 cut(s) 880
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 880
BaeGI GKGCMC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 938
BanII GRGCYC 1 cut(s) 222
BauI CACGAG 1 cut(s) 905
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 173, 222
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 500, 947
BciT130I CCWGG 3 cut(s) 11, 706, 719
BcoDI GTCTC 4 cut(s) 22, 130, 168, 184
BfaI CTAG 2 cut(s) 362, 849
BglII AGATCT 2 cut(s) 605, 693
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 3 cut(s) 11, 706, 719
Bme18I GGWCC 1 cut(s) 880
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 880
BmiI GGNNCC 2 cut(s) 372, 723
BmrFI CCNGG 3 cut(s) 11, 706, 719
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 366
BpuEI CTTGAG 3 cut(s) 182, 471, 971
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 9, 207
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 266, 410, 735
Bse1I ACTGG 2 cut(s) 667, 772
BseBI CCWGG 3 cut(s) 11, 706, 719
BseDI CCNNGG 2 cut(s) 9, 207
BseLI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 735
BseMII CTCAG 3 cut(s) 35, 179, 357
BseNI ACTGG 2 cut(s) 667, 772
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 938, 963
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 173, 222
BsiHKCI CYCGRG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 735
BsmAI GTCTC 4 cut(s) 22, 130, 168, 184
BsmBI CGTCTC 4 cut(s) 22, 130, 168, 184
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 2 cut(s) 938, 963
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 173, 222
Bsp143I GATC 7 cut(s) 174, 193, 331, 532, 605, 693, 786
BspACI CCGC 2 cut(s) 780, 878
BspANI GGCC 2 cut(s) 938, 963
BspCNI CTCAG 3 cut(s) 34, 178, 358
BspLI GGNNCC 2 cut(s) 372, 723
BspPI GGATC 1 cut(s) 527
BspQI GCTCTTC 1 cut(s) 390
BsrI ACTGG 2 cut(s) 667, 772
BssECI CCNNGG 2 cut(s) 9, 207
BssMI GATC 7 cut(s) 174, 193, 331, 532, 605, 693, 786
BssNI GRCGYC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 905
BssT1I CCWWGG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 905
Bst2UI CCWGG 3 cut(s) 11, 706, 719
Bst4CI ACNGT 2 cut(s) 118, 867
Bst6I CTCTTC 4 cut(s) 390, 675, 890, 987
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 965
BstDEI CTNAG 6 cut(s) 21, 109, 165, 262, 366, 713
BstHHI GCGC 2 cut(s) 48, 894
BstKTI GATC 7 cut(s) 177, 196, 334, 535, 608, 696, 789
BstMAI GTCTC 4 cut(s) 22, 130, 168, 184
BstMBI GATC 7 cut(s) 174, 193, 331, 532, 605, 693, 786
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 964
BstNI CCWGG 3 cut(s) 11, 706, 719
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 9, 704, 717
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 3 cut(s) 532, 605, 693
BstYI RGATCY 3 cut(s) 532, 605, 693
BsuRI GGCC 2 cut(s) 938, 963
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 173, 193
Cac8I GCNNGC 1 cut(s) 965
CfoI GCGC 2 cut(s) 48, 894
Cfr13I GGNCC 1 cut(s) 880
Csp6I GTAC 2 cut(s) 325, 469
CviAII CATG 4 cut(s) 248, 420, 568, 811
CviQI GTAC 2 cut(s) 325, 469
DdeI CTNAG 6 cut(s) 21, 109, 165, 262, 366, 713
DpnI GATC 7 cut(s) 176, 195, 333, 534, 607, 695, 788
DpnII GATC 7 cut(s) 174, 193, 331, 532, 605, 693, 786
DraI TTTAAA 1 cut(s) 805
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 4 cut(s) 390, 675, 890, 987
EarI CTCTTC 4 cut(s) 390, 675, 890, 987
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 880
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 499, 871
Eco88I CYCGRG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 3 cut(s) 9, 704, 717
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 4 cut(s) 22, 130, 168, 184
FaeI CATG 4 cut(s) 251, 423, 571, 814
FaqI GGGAC 1 cut(s) 131
FatI CATG 4 cut(s) 247, 419, 567, 810
FauNDI CATATG 1 cut(s) 475
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 2 cut(s) 362, 849
GlaI GCGC 2 cut(s) 47, 893
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 2 cut(s) 938, 963
HhaI GCGC 2 cut(s) 48, 894
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 251, 423, 571, 814
Hin6I GCGC 2 cut(s) 46, 892
HinP1I GCGC 2 cut(s) 46, 892
HincII GTYRAC 2 cut(s) 426, 687
HindII GTYRAC 2 cut(s) 426, 687
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 4 cut(s) 5, 40, 683, 973
Hpy166II GTNNAC 5 cut(s) 171, 426, 471, 540, 687
Hpy188I TCNGA 3 cut(s) 24, 39, 224
Hpy188III TCNNGA 1 cut(s) 820
Hpy8I GTNNAC 5 cut(s) 171, 426, 471, 540, 687
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 260, 267
HpyCH4III ACNGT 2 cut(s) 118, 867
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 171, 359, 399, 419, 814
HpyF10VI GCNNNNNNNGC 1 cut(s) 964
HpyF3I CTNAG 6 cut(s) 21, 109, 165, 262, 366, 713
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 251, 423, 571, 814
HspAI GCGC 2 cut(s) 46, 892
Kzo9I GATC 7 cut(s) 174, 193, 331, 532, 605, 693, 786
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 376, 707
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 2 cut(s) 362, 849
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 3 cut(s) 51, 112, 763
MalI GATC 7 cut(s) 176, 195, 333, 534, 607, 695, 788
MboI GATC 7 cut(s) 174, 193, 331, 532, 605, 693, 786
MfeI CAATTG 1 cut(s) 830
MflI RGATCY 3 cut(s) 532, 605, 693
MhlI GDGCHC 2 cut(s) 173, 222
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 7 cut(s) 130, 232, 394, 406, 437, 753, 830
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 7 cut(s) 113, 361, 373, 399, 732, 846, 893
Mox20I TGGCCA 1 cut(s) 938
MroXI GAANNNNTTC 1 cut(s) 859
MscI TGGCCA 1 cut(s) 938
MseI TTAA 4 cut(s) 231, 315, 393, 804
Msp20I TGGCCA 1 cut(s) 938
MspR9I CCNGG 3 cut(s) 11, 706, 719
MunI CAATTG 1 cut(s) 830
Mva1269I GAATGC 1 cut(s) 861
MvaI CCWGG 3 cut(s) 11, 706, 719
MwoI GCNNNNNNNGC 1 cut(s) 964
NdeI CATATG 1 cut(s) 475
NdeII GATC 7 cut(s) 174, 193, 331, 532, 605, 693, 786
NlaIII CATG 4 cut(s) 251, 423, 571, 814
NlaIV GGNNCC 2 cut(s) 372, 723
NmuCI GTSAC 2 cut(s) 51, 112
NspI RCATGY 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 390
PctI GAATGC 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 859
PfeI GAWTC 3 cut(s) 5, 40, 973
PkrI GCNGC 1 cut(s) 418
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 3 cut(s) 9, 704, 717
PspGI CCWGG 3 cut(s) 9, 704, 717
PspN4I GGNNCC 2 cut(s) 372, 723
PspPI GGNCC 1 cut(s) 880
PsuI RGATCY 3 cut(s) 532, 605, 693
PvuI CGATCG 1 cut(s) 177
RsaI GTAC 2 cut(s) 326, 470
RsaNI GTAC 2 cut(s) 325, 469
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 231, 315, 393, 804
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 7 cut(s) 174, 193, 331, 532, 605, 693, 786
Sau96I GGNCC 1 cut(s) 880
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 3 cut(s) 11, 706, 719
SduI GDGCHC 2 cut(s) 173, 222
SinI GGWCC 1 cut(s) 880
SmlI CTYRAG 3 cut(s) 197, 486, 986
SmoI CTYRAG 3 cut(s) 197, 486, 986
Sse9I AATT 7 cut(s) 130, 232, 394, 406, 437, 753, 830
SsiI CCGC 2 cut(s) 780, 878
SspMI CTAG 2 cut(s) 362, 849
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 9, 704, 717
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 118, 867
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 280, 942
TasI AATT 7 cut(s) 130, 232, 394, 406, 437, 753, 830
TfiI GAWTC 3 cut(s) 5, 40, 973
Tru1I TTAA 4 cut(s) 231, 315, 393, 804
Tru9I TTAA 4 cut(s) 231, 315, 393, 804
TscAI CASTG 2 cut(s) 173, 193
TseFI GTSAC 2 cut(s) 51, 112
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 2 cut(s) 51, 112
TspDTI ATGAA 1 cut(s) 556
TspGWI ACGGA 2 cut(s) 133, 525
TspRI CASTG 2 cut(s) 173, 193
VneI GTGCAC 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 880
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XmiI GTMKAC 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 859
XspI CTAG 2 cut(s) 362, 849
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.