Rh7BG269100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012472
Physical Location & Seq
Forward (+)
24690474 .. 24690878
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG269100.1

Sequence Viewer

Length: 405 bp
ATGTTTTCAATTTATGTCTGTTTTGTAGATCTGGGATCTTTTATTGCATTCTTACTTAGTGATATATATATTTCTGGTGTCTTATTTGTCAGGTCGACAAAGATCTTACGCTCCTGGTTTCTAAGCCAGGAACCAGCCCTGTATTGGAGGTGGGAAACCATAATTGGACTTGTTACTGGTTTTTCAACCGCATTGATCTCAATAAGCTTCTTTAAACTCATGCAACTCTTGAAATCTCAATTGCCTCAAATCTCTGCTAGAAGAATGCTTACACAGTCAATCTCAGTGGTCCTCTTCAGGCGCACTTGTTTTCTTGTGGCATACATCTCTTTTATTGGTTGGTTGGCCATCGAGTTTGGGAAAAGGCTTGGCCTGCCAGAGATTCTCACTCTTCTCAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.45

Weight (kDa)

9.75

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 95
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 3 cut(s) 9, 186, 232
AjnI CCWGG 2 cut(s) 113, 126
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AlwI GGATC 1 cut(s) 43
AoxI GGCC 2 cut(s) 345, 370
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 289
AvaII GGWCC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 347
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 2 cut(s) 115, 128
BfaI CTAG 1 cut(s) 258
BglII AGATCT 2 cut(s) 28, 102
Bme1390I CCNGG 2 cut(s) 115, 128
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 115, 128
BpuEI CTTGAG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 2 cut(s) 115, 128
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 181
BshFI GGCC 2 cut(s) 347, 372
BslI CCNNNNNNNGG 1 cut(s) 144
BsmI GAATGC 2 cut(s) 47, 270
BsnI GGCC 2 cut(s) 347, 372
Bsp143I GATC 4 cut(s) 28, 35, 102, 195
BspACI CCGC 1 cut(s) 189
BspANI GGCC 2 cut(s) 347, 372
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 181
BssMI GATC 4 cut(s) 28, 35, 102, 195
Bst2UI CCWGG 2 cut(s) 115, 128
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 2 cut(s) 299, 396
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 3 cut(s) 56, 122, 283
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 4 cut(s) 31, 38, 105, 198
BstMBI GATC 4 cut(s) 28, 35, 102, 195
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNI CCWGG 2 cut(s) 115, 128
BstSCI CCNGG 2 cut(s) 113, 126
BstX2I RGATCY 3 cut(s) 28, 35, 102
BstYI RGATCY 3 cut(s) 28, 35, 102
BsuRI GGCC 2 cut(s) 347, 372
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 374
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 289
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 1 cut(s) 220
CviJI RGCY 6 cut(s) 126, 137, 207, 347, 367, 372
CviKI_1 RGCY 6 cut(s) 126, 137, 207, 347, 367, 372
DdeI CTNAG 3 cut(s) 56, 122, 283
DpnI GATC 4 cut(s) 30, 37, 104, 197
DpnII GATC 4 cut(s) 28, 35, 102, 195
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 299, 396
EarI CTCTTC 2 cut(s) 299, 396
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 113, 126
FaeI CATG 1 cut(s) 223
FaiI YATR 7 cut(s) 15, 65, 67, 69, 161, 221, 322
FatI CATG 1 cut(s) 219
FblI GTMKAC 1 cut(s) 95
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 302
HaeIII GGCC 2 cut(s) 347, 372
HhaI GCGC 1 cut(s) 303
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 47, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 3 cut(s) 56, 122, 283
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 4 cut(s) 28, 35, 102, 195
LmnI GCTCC 1 cut(s) 116
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 172
MalI GATC 4 cut(s) 30, 37, 104, 197
MboI GATC 4 cut(s) 28, 35, 102, 195
MboII GAAGA 3 cut(s) 273, 286, 383
MfeI CAATTG 1 cut(s) 239
MflI RGATCY 3 cut(s) 28, 35, 102
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 3 cut(s) 9, 162, 239
MluNI TGGCCA 1 cut(s) 347
MnlI CCTC 3 cut(s) 141, 255, 302
Mox20I TGGCCA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 347
MseI TTAA 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 347
MspR9I CCNGG 2 cut(s) 115, 128
MunI CAATTG 1 cut(s) 239
Mva1269I GAATGC 2 cut(s) 47, 270
MvaI CCWGG 2 cut(s) 115, 128
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 4 cut(s) 28, 35, 102, 195
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 132
PctI GAATGC 2 cut(s) 47, 270
PfeI GAWTC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 113, 126
PspGI CCWGG 2 cut(s) 113, 126
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 289
PsuI RGATCY 3 cut(s) 28, 35, 102
SalI GTCGAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 4 cut(s) 28, 35, 102, 195
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 115, 128
SetI ASST 3 cut(s) 95, 152, 209
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 3 cut(s) 9, 162, 239
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 113, 126
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 95, 351
TasI AATT 3 cut(s) 9, 162, 239
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 291
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.