MD06G1015300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012472
Physical Location & Seq
Forward (+)
1942676 .. 1948290
5615 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1015300.v1.1.491

Sequence Viewer

Length: 879 bp
ATGGATTCTGAGGAGGCCTCTGCGAAGGGCAGCGTGGCCAATTTAATACTCCGGTGGTCTCTGTGTCTCCTTCTCCCTATCCTTGCTTTCTTTTCACTATCGCTTTTCGTCGCTTTCGTCGCCGTTTTCGTCGCCGATTCCTCAATTCCTAGCCCAATTTCCGTGCCCTCTCAGTGCAGGATCGTCTCAAGCAGTGTTGATCTTAAGTCATCTAAGGTGTGTGAGCTTGGATTGTTCAATTATAAAGCCAAGCATGTGTTTTATCCTTTTGAGGGAAGAAGATTTCGTTGCCGTTATGATTACTACTGGGCTTCAATTTTTAAGGTGGAATACAAAGATCAGTCTTCTGGTCAGACTCAGCTTGCATTAGCTGAGGCTCCAGATGAGGCCCTTCCTCTTAATTGCAGACCTAATTTTGGTGCTGCATGGCTGACCAAAGACAAATTCAAGGTCAATGAAACTTATGACTGCTGGTACACATATGGCATTTCCAAAGTAAGCTTATATCATGATGGTTTCTTCAGTTGCCAAGCTAAAGATCCGTCTACATTTGAGATGATTAGAAGATATTGCATCTTGGCGACGAAGATTTTACACGCCTGGATTTTCAGCCAGAAACGAAGCGTGTTTTGCAGGTGGGAAACCATAGCTGGAGTTGTTAGTGGGTTTTCAACTTCTATCATCTCCATATTCTTTGTTAGACTCCTGCAGCAAATGAAATTTCGGTTGCCTCAGATTTTGGCTGCAAGAGTGCGTACTATCAGTTTCAGGCGCACTTGTTTACTTGTGGCATACATCTCTTTTGTGGGTTGGCTGGCTATCCAGTATGGGAAAAGGCTCGGCCTCCCGGAGATCATCGTTCTTCTTAAGAACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.34

Weight (kDa)

9.39

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AarI CACCTGC 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 624
AccI GTMKAC 1 cut(s) 545
AclWI GGATC 2 cut(s) 188, 533
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 2 cut(s) 443, 719
AcuI CTGAAG 1 cut(s) 505
AfaI GTAC 2 cut(s) 476, 757
AfiI CCNNNNNNNGG 2 cut(s) 272, 416
AflII CTTAAG 2 cut(s) 203, 866
AgsI TTSAA 4 cut(s) 238, 315, 448, 672
AjnI CCWGG 1 cut(s) 599
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 6 cut(s) 226, 361, 371, 501, 533, 650
AluI AGCT 6 cut(s) 226, 361, 371, 501, 533, 650
Alw26I GTCTC 3 cut(s) 63, 71, 190
AlwI GGATC 2 cut(s) 188, 533
AoxI GGCC 4 cut(s) 15, 36, 387, 841
ApeKI GCWGC 4 cut(s) 30, 422, 709, 743
ApoI RAATTY 2 cut(s) 443, 719
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
AspLEI GCGC 1 cut(s) 774
AspS9I GGNCC 1 cut(s) 388
AsuC2I CCSGG 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 4 cut(s) 42, 409, 721, 730
BccI CCATC 1 cut(s) 506
BceAI ACGGC 2 cut(s) 107, 276
BciT130I CCWGG 1 cut(s) 601
BcnI CCSGG 1 cut(s) 848
BcoDI GTCTC 3 cut(s) 63, 71, 190
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 707
BfrI CTTAAG 2 cut(s) 203, 866
BfuAI ACCTGC 1 cut(s) 624
BisI GCNGC 4 cut(s) 31, 423, 710, 744
BlsI GCNGC 4 cut(s) 32, 424, 711, 745
Bme1390I CCNGG 2 cut(s) 601, 848
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 2 cut(s) 601, 848
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 336
BplI GAGNNNNNCTC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 363, 672
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 848
BsaI GGTCTC 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 416
Bse1I ACTGG 2 cut(s) 311, 823
BseBI CCWGG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 272, 416
BseMII CTCAG 4 cut(s) 185, 363, 371, 746
BseNI ACTGG 2 cut(s) 311, 823
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 4 cut(s) 42, 409, 721, 730
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 4 cut(s) 17, 38, 389, 843
BsiSI CCGG 2 cut(s) 52, 848
BslI CCNNNNNNNGG 2 cut(s) 272, 416
BsmAI GTCTC 3 cut(s) 63, 71, 190
BsmBI CGTCTC 1 cut(s) 190
BsnI GGCC 4 cut(s) 17, 38, 389, 843
Bso31I GGTCTC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 5 cut(s) 180, 199, 337, 538, 852
BspANI GGCC 4 cut(s) 17, 38, 389, 843
BspCNI CTCAG 4 cut(s) 184, 364, 370, 745
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 711
BspMI ACCTGC 1 cut(s) 624
BspPI GGATC 2 cut(s) 188, 533
BspTI CTTAAG 2 cut(s) 203, 866
BspTNI GGTCTC 1 cut(s) 63
BsrI ACTGG 2 cut(s) 311, 823
BssMI GATC 5 cut(s) 180, 199, 337, 538, 852
Bst2UI CCWGG 1 cut(s) 601
BstAFI CTTAAG 2 cut(s) 203, 866
BstC8I GCNNGC 2 cut(s) 363, 816
BstDEI CTNAG 6 cut(s) 9, 171, 213, 357, 372, 732
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 5 cut(s) 183, 202, 340, 541, 855
BstMAI GTCTC 3 cut(s) 63, 71, 190
BstMBI GATC 5 cut(s) 180, 199, 337, 538, 852
BstMWI GCNNNNNNNGC 2 cut(s) 119, 630
BstNI CCWGG 1 cut(s) 601
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 599, 846
BstSFI CTRYAG 1 cut(s) 707
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 42, 409, 721, 730
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 4 cut(s) 17, 38, 389, 843
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 179, 199
BveI ACCTGC 1 cut(s) 624
Cac8I GCNNGC 2 cut(s) 363, 816
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 774
Cfr13I GGNCC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 475, 756
CviAII CATG 3 cut(s) 254, 426, 509
CviQI GTAC 2 cut(s) 475, 756
DdeI CTNAG 6 cut(s) 9, 171, 213, 357, 372, 732
DpnI GATC 5 cut(s) 182, 201, 339, 540, 854
DpnII GATC 5 cut(s) 180, 199, 337, 538, 852
EaeI YGGCCR 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 599
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 3 cut(s) 257, 429, 512
FatI CATG 3 cut(s) 253, 425, 508
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 1 cut(s) 545
Fnu4HI GCNGC 4 cut(s) 31, 423, 710, 744
Fsp4HI GCNGC 4 cut(s) 31, 423, 710, 744
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 773
GluI GCNGC 4 cut(s) 31, 423, 710, 744
GsuI CTGGAG 2 cut(s) 363, 672
HaeIII GGCC 4 cut(s) 17, 38, 389, 843
HapII CCGG 2 cut(s) 52, 848
HhaI GCGC 1 cut(s) 774
Hin1II CATG 3 cut(s) 257, 429, 512
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 4 cut(s) 5, 137, 355, 702
HpaII CCGG 2 cut(s) 52, 848
Hpy166II GTNNAC 3 cut(s) 477, 546, 782
Hpy188I TCNGA 3 cut(s) 10, 354, 735
Hpy188III TCNNGA 3 cut(s) 380, 509, 876
Hpy8I GTNNAC 3 cut(s) 477, 546, 782
Hpy99I CGWCG 4 cut(s) 113, 122, 134, 586
HpyAV CCTTC 3 cut(s) 19, 80, 401
HpyCH4V TGCA 8 cut(s) 177, 365, 405, 425, 573, 633, 709, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 630
HpyF3I CTNAG 6 cut(s) 9, 171, 213, 357, 372, 732
Hsp92II CATG 3 cut(s) 257, 429, 512
HspAI GCGC 1 cut(s) 772
Kzo9I GATC 5 cut(s) 180, 199, 337, 538, 852
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 4 cut(s) 42, 409, 721, 730
LweI GCATC 1 cut(s) 582
MaeI CTAG 1 cut(s) 150
MalI GATC 5 cut(s) 182, 201, 339, 540, 854
MboI GATC 5 cut(s) 180, 199, 337, 538, 852
MboII GAAGA 7 cut(s) 288, 291, 336, 511, 576, 598, 854
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 9 cut(s) 40, 144, 156, 238, 315, 400, 412, 443, 719
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 2 cut(s) 349, 696
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 5 cut(s) 44, 204, 321, 399, 867
Msp20I TGGCCA 1 cut(s) 38
MspCI CTTAAG 2 cut(s) 203, 866
MspI CCGG 2 cut(s) 52, 848
MspR9I CCNGG 2 cut(s) 601, 848
MvaI CCWGG 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 119, 630
NciI CCSGG 1 cut(s) 848
NdeI CATATG 1 cut(s) 481
NdeII GATC 5 cut(s) 180, 199, 337, 538, 852
NlaIII CATG 3 cut(s) 257, 429, 512
NlaIV GGNNCC 1 cut(s) 378
NmeAIII GCCGAG 1 cut(s) 819
NspI RCATGY 1 cut(s) 257
PagI TCATGA 1 cut(s) 508
PaqCI CACCTGC 1 cut(s) 624
PceI AGGCCT 1 cut(s) 17
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 126
PfeI GAWTC 2 cut(s) 5, 137
PfoI TCCNGGA 1 cut(s) 846
PkrI GCNGC 4 cut(s) 32, 424, 711, 745
PleI GAGTC 2 cut(s) 349, 696
PpsI GAGTC 2 cut(s) 349, 696
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 599
PspGI CCWGG 1 cut(s) 599
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 388
PstI CTGCAG 1 cut(s) 711
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 2 cut(s) 476, 757
RsaNI GTAC 2 cut(s) 475, 756
SaqAI TTAA 5 cut(s) 44, 204, 321, 399, 867
SatI GCNGC 4 cut(s) 31, 423, 710, 744
Sau3AI GATC 5 cut(s) 180, 199, 337, 538, 852
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 2 cut(s) 349, 696
ScrFI CCNGG 2 cut(s) 601, 848
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 1 cut(s) 582
SfcI CTRYAG 1 cut(s) 707
SmlI CTYRAG 3 cut(s) 187, 203, 866
SmoI CTYRAG 3 cut(s) 187, 203, 866
Sse9I AATT 9 cut(s) 40, 144, 156, 238, 315, 400, 412, 443, 719
SseBI AGGCCT 1 cut(s) 17
SspMI CTAG 1 cut(s) 150
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 599, 846
TasI AATT 9 cut(s) 40, 144, 156, 238, 315, 400, 412, 443, 719
TfiI GAWTC 2 cut(s) 5, 137
Tru1I TTAA 5 cut(s) 44, 204, 321, 399, 867
Tru9I TTAA 5 cut(s) 44, 204, 321, 399, 867
TscAI CASTG 2 cut(s) 179, 199
TseI GCWGC 4 cut(s) 30, 422, 709, 743
TspDTI ATGAA 2 cut(s) 471, 731
TspGWI ACGGA 2 cut(s) 151, 531
TspRI CASTG 2 cut(s) 179, 199
Vha464I CTTAAG 2 cut(s) 203, 866
XapI RAATTY 2 cut(s) 443, 719
XceI RCATGY 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 545
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.