Rh7BG269000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012472
Physical Location & Seq
Forward (+)
24686444 .. 24688289
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG269000.1

Sequence Viewer

Length: 498 bp
ATGGATTCCCAGGACGTGTCTCAGAAGAAGGGCTATCTGATTCTGCGGTGGTCACTCGCTCTCCTTTTCCCTATCGTCGCTTTCTCTTCTCTCTCACTTTTCCTCGTCTTAGTCACAGTTTTCGTCTCCAATTCTTCGGTTTCCGTCCCCATTTCGGTTTCGTCTCAGTGCAGGGTCGTCTCCAGCAGTGTTGATCTTAAGTCAGCCAAGGTTTGTGAGCTCGGATTGTTCAATTACAAAGCCAAGCATGTGTTCTATCCTTTAGAAGGAAGAAGGTTTCGATGTCGTTATGATTACTATTGGGCTTCTGTTTTTAAGGTGGAGTACCAAGATCAGTCTTCTGGTCAAACTCAGGTTGCACTAGCTGAGGCTCCAAGTGAGGCTCTTCCTATTAATTGCAGACCTAATTTTGGTGCTGCATGGTTGACCAAAGACAAATTCAAGATTAGGTGCCAAGTGTCGGTTTTAGATTTCGTCGTGAAATCTCATGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

9.13

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 450
AciI CCGC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 437
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 460
AflII CTTAAG 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 232, 442
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 9
AjuI GAANNNNNNNTTGG 4 cut(s) 236, 268, 422, 454
AluBI AGCT 2 cut(s) 220, 365
AluI AGCT 2 cut(s) 220, 365
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 4 cut(s) 24, 130, 168, 184
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 437
AseI ATTAAT 1 cut(s) 393
BanI GGYRCC 1 cut(s) 450
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 4 cut(s) 24, 130, 168, 184
BfaI CTAG 1 cut(s) 362
BfrI CTTAAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 372, 452
BmrFI CCNGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 9, 207
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 266, 410, 460
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 9, 207
BseLI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 460
BseMII CTCAG 4 cut(s) 35, 179, 357, 365
BseXI GCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 222
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 460
BsmAI GTCTC 4 cut(s) 24, 130, 168, 184
BsmBI CGTCTC 3 cut(s) 130, 168, 184
BsmFI GGGAC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 193, 331
BspACI CCGC 1 cut(s) 46
BspCNI CTCAG 4 cut(s) 34, 178, 358, 364
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 372, 452
BspQI GCTCTTC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 450
BspTI CTTAAG 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 9, 207
BssMI GATC 2 cut(s) 193, 331
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 91, 390
BstAFI CTTAAG 1 cut(s) 197
BstDEI CTNAG 5 cut(s) 21, 109, 165, 351, 366
BstENI CCTNNNNNAGG 1 cut(s) 264
BstKTI GATC 2 cut(s) 196, 334
BstMAI GTCTC 4 cut(s) 24, 130, 168, 184
BstMBI GATC 2 cut(s) 193, 331
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 330
BtrI CACGTC 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 173, 193
CciI TCATGA 1 cut(s) 487
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 248, 420, 488
CviJI RGCY 8 cut(s) 33, 206, 220, 242, 305, 365, 371, 383
CviKI_1 RGCY 8 cut(s) 33, 206, 220, 242, 305, 365, 371, 383
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 5 cut(s) 21, 109, 165, 351, 366
DpnI GATC 2 cut(s) 195, 333
DpnII GATC 2 cut(s) 193, 331
Eam1104I CTCTTC 2 cut(s) 91, 390
EarI CTCTTC 2 cut(s) 91, 390
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 3 cut(s) 130, 168, 184
FaeI CATG 3 cut(s) 251, 423, 491
FaiI YATR 4 cut(s) 249, 291, 421, 489
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 247, 419, 487
Fnu4HI GCNGC 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 362
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 166
Hin1II CATG 3 cut(s) 251, 423, 491
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 2 cut(s) 5, 40
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 3 cut(s) 24, 39, 224
Hpy188III TCNNGA 3 cut(s) 442, 478, 488
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 2 cut(s) 80, 479
HpyAV CCTTC 3 cut(s) 22, 260, 267
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 171, 359, 399, 419
HpyF3I CTNAG 5 cut(s) 21, 109, 165, 351, 366
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 251, 423, 491
Kzo9I GATC 2 cut(s) 193, 331
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 5 cut(s) 23, 157, 196, 327, 338
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 51, 112
MalI GATC 2 cut(s) 195, 333
MboI GATC 2 cut(s) 193, 331
MboII GAAGA 6 cut(s) 37, 78, 126, 282, 330, 377
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 5 cut(s) 130, 232, 394, 406, 437
MnlI CCTC 3 cut(s) 113, 361, 373
MseI TTAA 3 cut(s) 198, 315, 393
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NdeII GATC 2 cut(s) 193, 331
NlaIII CATG 3 cut(s) 251, 423, 491
NlaIV GGNNCC 2 cut(s) 372, 452
NmuCI GTSAC 2 cut(s) 51, 112
NspI RCATGY 1 cut(s) 251
PagI TCATGA 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 5, 40
PkrI GCNGC 1 cut(s) 418
PshBI ATTAAT 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 372, 452
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 198, 315, 393
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 2 cut(s) 193, 331
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 222
SetI ASST 9 cut(s) 18, 213, 222, 278, 321, 357, 367, 406, 452
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 5 cut(s) 130, 232, 394, 406, 437
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 280
TasI AATT 5 cut(s) 130, 232, 394, 406, 437
TfiI GAWTC 2 cut(s) 5, 40
Tru1I TTAA 3 cut(s) 198, 315, 393
Tru9I TTAA 3 cut(s) 198, 315, 393
TscAI CASTG 2 cut(s) 173, 193
TseFI GTSAC 2 cut(s) 51, 112
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 2 cut(s) 51, 112
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 2 cut(s) 173, 193
Vha464I CTTAAG 1 cut(s) 197
VspI ATTAAT 1 cut(s) 393
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 251
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.