RLG00000002809

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012472
Physical Location & Seq
Reverse (-)
40203239 .. 40205668
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002809

Sequence Viewer

Length: 780 bp
ATGGATTCCCAGGAGGTCTCTCAGAAGAAGGGCTATCTGATTCTGCGCTGGTCTTTCGCTCTCCTTTTCCCTATCGTCGCTTTCTCTTCTCTCTCACTTTTCCTCGTCTTAGTCACAGTTTTCGTCTCCAATTTTTCGGTTTCCGGCCCCATTTCGGTTTCGTCTCAGTGCAGGATCGTCTCCAGCAGTGTTGATCTTAAGTCAGCCAAGGTTTGTGAGCTCGGATTGTTTAATTACAAAGCCAAGCATGTGTTTTATCCCTTAGAAGGAAGAAGGTTTCGATGTCGTTATGATTACTATTGGGCTTCTGTTTTTAAGGTGGAGTACCAAGATCAGTCTTCTGGTCAAACTCGAGTTGCACTAGCTGAGGCTCCAAGTGAGGCTCTTCCTCTTAATTGCAGACCTAATTTTGGTGCTGCATGGATGACCAAAGACAAATTCAAGGTTCATGTTCTTGGACGTTGTCTTGGAGCAAAACGGTTTTGGGGTTATTTGGAGGAATTGGATGAGGCGAATGAATCGAGGCCGAAGTTGAAAGACTTATTATTGAGGGTTTTAGAGGTGTTCAGCTCGGTTTCTGGCTTGAAGATAAATAGAGCTGAATGTTCGATTTCAGGAATAAACAGTGGAAGAGTTGGCAACAATTTCAGTTCACAGTTGCCACTTCGGCATCCGGTTGTCGAAAAAGTGGAGAGGAGATCAGAAGGCTGGGCTAAAGCCAATTTACTCACTCACTTTTTCGGATTTCTAAAACTGTGGCTAAAAGGATTGGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.37

Weight (kDa)

9.51

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 437
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 154, 266, 410
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 442, 535, 586
AjnI CCWGG 1 cut(s) 9
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 4 cut(s) 220, 365, 570, 599
AluI AGCT 4 cut(s) 220, 365, 570, 599
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 4 cut(s) 22, 130, 168, 184
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 2 cut(s) 145, 524
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 437
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 351
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 4 cut(s) 22, 130, 168, 184
BfaI CTAG 1 cut(s) 362
BfrI CTTAAG 1 cut(s) 197
BglI GCCNNNNNGGC 1 cut(s) 667
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 148, 372
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 9, 207
BsaWI WCCGGW 1 cut(s) 673
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 266, 410
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 9, 207
BseGI GGATG 3 cut(s) 429, 511, 670
BseLI CCNNNNNNNGG 3 cut(s) 154, 266, 410
BseMII CTCAG 3 cut(s) 35, 179, 357
BseRI GAGGAG 1 cut(s) 709
BseXI GCAGC 1 cut(s) 403
BseYI CCCAGC 1 cut(s) 708
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 2 cut(s) 147, 526
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 2 cut(s) 144, 674
BslI CCNNNNNNNGG 3 cut(s) 154, 266, 410
BsmAI GTCTC 4 cut(s) 22, 130, 168, 184
BsmBI CGTCTC 3 cut(s) 130, 168, 184
BsnI GGCC 2 cut(s) 147, 526
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 4 cut(s) 174, 193, 331, 698
BspANI GGCC 2 cut(s) 147, 526
BspCNI CTCAG 3 cut(s) 34, 178, 358
BspLI GGNNCC 2 cut(s) 148, 372
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 9, 207
BssMI GATC 4 cut(s) 174, 193, 331, 698
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 5 cut(s) 118, 480, 626, 657, 756
Bst6I CTCTTC 3 cut(s) 91, 390, 625
BstAFI CTTAAG 1 cut(s) 197
BstDEI CTNAG 5 cut(s) 21, 109, 165, 262, 366
BstF5I GGATG 3 cut(s) 429, 511, 670
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 4 cut(s) 177, 196, 334, 701
BstMAI GTCTC 4 cut(s) 22, 130, 168, 184
BstMBI GATC 4 cut(s) 174, 193, 331, 698
BstMWI GCNNNNNNNGC 1 cut(s) 667
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 330
BsuRI GGCC 2 cut(s) 147, 526
BtsCI GGATG 3 cut(s) 429, 511, 670
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 173, 193, 631
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 248, 420, 449
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 5 cut(s) 21, 109, 165, 262, 366
DpnI GATC 4 cut(s) 176, 195, 333, 700
DpnII GATC 4 cut(s) 174, 193, 331, 698
Eam1104I CTCTTC 3 cut(s) 91, 390, 625
EarI CTCTTC 3 cut(s) 91, 390, 625
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 3 cut(s) 130, 168, 184
FaeI CATG 3 cut(s) 251, 423, 452
FaiI YATR 4 cut(s) 249, 291, 421, 450
FatI CATG 3 cut(s) 247, 419, 448
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 3 cut(s) 436, 518, 657
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 417
GsaI CCCAGC 1 cut(s) 712
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 2 cut(s) 147, 526
HapII CCGG 2 cut(s) 144, 674
HhaI GCGC 1 cut(s) 48
Hin1II CATG 3 cut(s) 251, 423, 452
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 3 cut(s) 5, 40, 518
HpaII CCGG 2 cut(s) 144, 674
Hpy166II GTNNAC 1 cut(s) 653
Hpy188I TCNGA 5 cut(s) 24, 39, 224, 703, 743
Hpy188III TCNNGA 1 cut(s) 615
Hpy8I GTNNAC 1 cut(s) 653
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 4 cut(s) 22, 260, 267, 698
HpyCH4III ACNGT 5 cut(s) 118, 480, 626, 657, 756
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 4 cut(s) 171, 359, 399, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 667
HpyF3I CTNAG 5 cut(s) 21, 109, 165, 262, 366
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 3 cut(s) 251, 423, 452
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 174, 193, 331, 698
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 376, 470
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 1 cut(s) 679
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 112
MalI GATC 4 cut(s) 176, 195, 333, 700
MboI GATC 4 cut(s) 174, 193, 331, 698
MboII GAAGA 7 cut(s) 37, 78, 282, 330, 377, 598, 642
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 8 cut(s) 130, 232, 394, 406, 437, 500, 643, 721
MseI TTAA 5 cut(s) 198, 231, 315, 393, 778
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 2 cut(s) 144, 674
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 667
NdeII GATC 4 cut(s) 174, 193, 331, 698
NlaIII CATG 3 cut(s) 251, 423, 452
NlaIV GGNNCC 2 cut(s) 148, 372
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 3 cut(s) 5, 40, 518
PflFI GACNNNGTC 1 cut(s) 462
PkrI GCNGC 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 708
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 148, 372
PspPI GGNCC 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 351
PsyI GACNNNGTC 1 cut(s) 462
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 5 cut(s) 198, 231, 315, 393, 778
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 4 cut(s) 174, 193, 331, 698
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 1 cut(s) 679
Sfr274I CTCGAG 1 cut(s) 351
SlaI CTCGAG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 197, 351
SmoI CTYRAG 2 cut(s) 197, 351
Sse9I AATT 8 cut(s) 130, 232, 394, 406, 437, 500, 643, 721
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 5 cut(s) 118, 480, 626, 657, 756
TaiI ACGT 1 cut(s) 463
TaqI TCGA 5 cut(s) 280, 352, 521, 608, 681
TasI AATT 8 cut(s) 130, 232, 394, 406, 437, 500, 643, 721
TfiI GAWTC 3 cut(s) 5, 40, 518
Tru1I TTAA 5 cut(s) 198, 231, 315, 393, 778
Tru9I TTAA 5 cut(s) 198, 231, 315, 393, 778
TscAI CASTG 3 cut(s) 173, 193, 631
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 437, 531
TspRI CASTG 3 cut(s) 173, 193, 631
Tth111I GACNNNGTC 1 cut(s) 462
Vha464I CTTAAG 1 cut(s) 197
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 351
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.