RchiOBHm_Chr7g0213391

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012472
Physical Location & Seq
Forward (+)
30496478 .. 30502000
5523 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19100

Sequence Viewer

Length: 885 bp
ATGGATTCCCAGGACGTGTCTCAGAAGAAGGGCTATCTGATTCTGCGCTGGTCTCTCGCTGTCCTTTTCCCTATCGTCGCTTTCTGTTCTCTCTCACTTTTCCTCGTCTTAGTCACAGTTTTCGTCTCCAATTCTTCGGTTTCCGGCCCCATTTCGGTTTCGTCTCAGTGCAGGATCGTCTCCAGCAGTGTTGATCTTAAGTCAGCCAAGGTTTGTGAGCTCGGATTGTTTAATTACAAAGCCAAGCATGTGTTTTATCCCTTAGAAGGAAGAAGGTTTCGATGTCGTCATGATTACTATTGGGCTTCTGTTTTTAAGGTGGAGTACCAAGATCAGTCTTCTGGTCAAACTCGGGTTGCACTAGCTGAGGCTCCAAGTGAGGCTCTTCCTCTTAATTGCAGACCTAATTTTGGTGCTGCATGGTTGACCAAAGACAAATTCAAGGTCAATAAGACTTATGACTGCTGGTACACATATGGTGTTTCTCAAGTAAGCTTATATGATGATGGTTTCTTCAGTTGCCAAGCTAAAGATCCGTCTACATTTGAAATGATAAGAAGATATTTCATCCTGTCAACAAAGATCTTACGCTCCTGGTTTCTAAGCCAGGAACCAGCCCTGTATTGGAGGTGGGAAACCATAATTGGACTTGTTACTGGTTTTTCAACCGCATTGATCTCAATAAGCTTCTTTAAACTCATGCAACTCTTGAAATCTCAATTGCCTCAAATCTCTGCTAGAAGAATGCTTACACAGTCAATCTCTGCGGTCCTCTTCAGGCGCACTTGTTTTCTCGTGGCATACATCTCTTTTATGGGTTGGTTGGCCATCGAGTATGGGAAAAGGCTTGGCCTGCCAGAGATTCTCACTCTTCTGAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

33.7

Weight (kDa)

9.4

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19140
fragaria_vesca FvH4_5g23960
malus_domestica MD00G1001800.v1.1 MD06G1015300.v1.1
prunus_persica Prupe.5G020400_v2.0.a1
pyrus_communis pycom16g25480
rosa_chinensis RchiOBHm_Chr7g0213391
rosa_laevigata RLG00000002809
rosa_multiflora Rmu_co8237685.1_g000001 Rmu_sc0029136.1_g000001 Rmu_ssc0000262.1_g000033
rosa_roxburghii Rroxscaffold_3G00246030
rosa_rugosa Rorug07G0142100
rosa_samantha Rh7AG273700 Rh7BG269000 Rh7BG269100 Rh7CG292800 Rh7DG281100
rosa_wichuraiana Rw7G023730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 539
AciI CCGC 2 cut(s) 669, 767
AclWI GGATC 2 cut(s) 182, 527
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 2 cut(s) 499, 760
AfaI GTAC 2 cut(s) 326, 470
AfiI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 624
AflII CTTAAG 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 4 cut(s) 442, 548, 666, 712
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 3 cut(s) 9, 593, 606
AjuI GAANNNNNNNTTGG 4 cut(s) 422, 454, 627, 659
AluBI AGCT 5 cut(s) 220, 365, 495, 527, 687
AluI AGCT 5 cut(s) 220, 365, 495, 527, 687
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 5 cut(s) 24, 57, 130, 168, 184
AlwI GGATC 2 cut(s) 182, 527
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 3 cut(s) 145, 825, 850
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
AspLEI GCGC 2 cut(s) 48, 783
AspS9I GGNCC 2 cut(s) 146, 769
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 769
BalI TGGCCA 1 cut(s) 827
BanII GRGCYC 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
BauI CACGAG 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 500, 836
BciT130I CCWGG 3 cut(s) 11, 595, 608
BcoDI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BfaI CTAG 2 cut(s) 362, 738
BfrI CTTAAG 1 cut(s) 197
BglII AGATCT 1 cut(s) 582
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 3 cut(s) 11, 595, 608
Bme18I GGWCC 1 cut(s) 769
BmeT110I CYCGRG 1 cut(s) 351
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 146, 769
BmiI GGNNCC 3 cut(s) 148, 372, 612
BmrFI CCNGG 3 cut(s) 11, 595, 608
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 9, 207
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 266, 410, 624
Bse1I ACTGG 1 cut(s) 661
BseBI CCWGG 3 cut(s) 11, 595, 608
BseDI CCNNGG 2 cut(s) 9, 207
BseGI GGATG 1 cut(s) 567
BseLI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 624
BseMII CTCAG 3 cut(s) 35, 179, 357
BseNI ACTGG 1 cut(s) 661
BseXI GCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 3 cut(s) 147, 827, 852
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 4 cut(s) 154, 266, 410, 624
BsmAI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BsmBI CGTCTC 3 cut(s) 130, 168, 184
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 3 cut(s) 147, 827, 852
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 6 cut(s) 174, 193, 331, 532, 582, 675
BspACI CCGC 2 cut(s) 669, 767
BspANI GGCC 3 cut(s) 147, 827, 852
BspCNI CTCAG 3 cut(s) 34, 178, 358
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 148, 372, 612
BspPI GGATC 2 cut(s) 182, 527
BspQI GCTCTTC 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 661
BssECI CCNNGG 2 cut(s) 9, 207
BssMI GATC 6 cut(s) 174, 193, 331, 532, 582, 675
BssSI CACGAG 1 cut(s) 794
BssT1I CCWWGG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 794
Bst2UI CCWGG 3 cut(s) 11, 595, 608
Bst4CI ACNGT 2 cut(s) 118, 756
Bst6I CTCTTC 3 cut(s) 390, 779, 876
BstAFI CTTAAG 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 854
BstDEI CTNAG 6 cut(s) 21, 109, 165, 262, 366, 602
BstF5I GGATG 1 cut(s) 567
BstHHI GCGC 2 cut(s) 48, 783
BstKTI GATC 6 cut(s) 177, 196, 334, 535, 585, 678
BstMAI GTCTC 5 cut(s) 24, 57, 130, 168, 184
BstMBI GATC 6 cut(s) 174, 193, 331, 532, 582, 675
BstMWI GCNNNNNNNGC 1 cut(s) 853
BstNI CCWGG 3 cut(s) 11, 595, 608
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 9, 593, 606
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 532, 582
BstYI RGATCY 2 cut(s) 532, 582
BsuRI GGCC 3 cut(s) 147, 827, 852
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 173, 193
Cac8I GCNNGC 1 cut(s) 854
CciI TCATGA 1 cut(s) 289
CfoI GCGC 2 cut(s) 48, 783
Cfr13I GGNCC 2 cut(s) 146, 769
Csp6I GTAC 2 cut(s) 325, 469
CviAII CATG 4 cut(s) 248, 290, 420, 700
CviQI GTAC 2 cut(s) 325, 469
DdeI CTNAG 6 cut(s) 21, 109, 165, 262, 366, 602
DpnI GATC 6 cut(s) 176, 195, 333, 534, 584, 677
DpnII GATC 6 cut(s) 174, 193, 331, 532, 582, 675
DraI TTTAAA 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 3 cut(s) 390, 779, 876
EarI CTCTTC 3 cut(s) 390, 779, 876
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 769
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 499, 760
Eco88I CYCGRG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 3 cut(s) 9, 593, 606
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 3 cut(s) 130, 168, 184
FaeI CATG 4 cut(s) 251, 293, 423, 703
FatI CATG 4 cut(s) 247, 289, 419, 699
FauNDI CATATG 1 cut(s) 475
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 1 cut(s) 554
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 2 cut(s) 362, 738
GlaI GCGC 2 cut(s) 47, 782
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 3 cut(s) 147, 827, 852
HapII CCGG 1 cut(s) 144
HhaI GCGC 2 cut(s) 48, 783
Hin1II CATG 4 cut(s) 251, 293, 423, 703
Hin6I GCGC 2 cut(s) 46, 781
HinP1I GCGC 2 cut(s) 46, 781
HincII GTYRAC 2 cut(s) 426, 576
HindII GTYRAC 2 cut(s) 426, 576
HindIII AAGCTT 2 cut(s) 493, 685
HinfI GANTC 3 cut(s) 5, 40, 862
HpaII CCGG 1 cut(s) 144
Hpy166II GTNNAC 4 cut(s) 426, 471, 540, 576
Hpy188I TCNGA 4 cut(s) 24, 39, 224, 876
Hpy188III TCNNGA 2 cut(s) 290, 709
Hpy8I GTNNAC 4 cut(s) 426, 471, 540, 576
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 4 cut(s) 22, 260, 267, 871
HpyCH4III ACNGT 2 cut(s) 118, 756
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 171, 359, 399, 419, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 853
HpyF3I CTNAG 6 cut(s) 21, 109, 165, 262, 366, 602
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 4 cut(s) 251, 293, 423, 703
HspAI GCGC 2 cut(s) 46, 781
Kzo9I GATC 6 cut(s) 174, 193, 331, 532, 582, 675
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 376, 596
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 2 cut(s) 362, 738
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 112, 652
MalI GATC 6 cut(s) 176, 195, 333, 534, 584, 677
MboI GATC 6 cut(s) 174, 193, 331, 532, 582, 675
MfeI CAATTG 1 cut(s) 719
MflI RGATCY 2 cut(s) 532, 582
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 7 cut(s) 130, 232, 394, 406, 437, 642, 719
MluNI TGGCCA 1 cut(s) 827
MnlI CCTC 7 cut(s) 113, 361, 373, 399, 621, 735, 782
Mox20I TGGCCA 1 cut(s) 827
MscI TGGCCA 1 cut(s) 827
MseI TTAA 5 cut(s) 198, 231, 315, 393, 693
Msp20I TGGCCA 1 cut(s) 827
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 3 cut(s) 11, 595, 608
MunI CAATTG 1 cut(s) 719
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 3 cut(s) 11, 595, 608
MwoI GCNNNNNNNGC 1 cut(s) 853
NdeI CATATG 1 cut(s) 475
NdeII GATC 6 cut(s) 174, 193, 331, 532, 582, 675
NlaIII CATG 4 cut(s) 251, 293, 423, 703
NlaIV GGNNCC 3 cut(s) 148, 372, 612
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 251
PagI TCATGA 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 390
PctI GAATGC 1 cut(s) 750
PfeI GAWTC 3 cut(s) 5, 40, 862
PkrI GCNGC 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 3 cut(s) 9, 593, 606
PspGI CCWGG 3 cut(s) 9, 593, 606
PspN4I GGNNCC 3 cut(s) 148, 372, 612
PspPI GGNCC 2 cut(s) 146, 769
PsuI RGATCY 2 cut(s) 532, 582
RsaI GTAC 2 cut(s) 326, 470
RsaNI GTAC 2 cut(s) 325, 469
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 5 cut(s) 198, 231, 315, 393, 693
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 6 cut(s) 174, 193, 331, 532, 582, 675
Sau96I GGNCC 2 cut(s) 146, 769
ScrFI CCNGG 3 cut(s) 11, 595, 608
SduI GDGCHC 1 cut(s) 222
SinI GGWCC 1 cut(s) 769
SmlI CTYRAG 2 cut(s) 197, 486
SmoI CTYRAG 2 cut(s) 197, 486
Sse9I AATT 7 cut(s) 130, 232, 394, 406, 437, 642, 719
SsiI CCGC 2 cut(s) 669, 767
SspMI CTAG 2 cut(s) 362, 738
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 9, 593, 606
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 118, 756
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 280, 831
TasI AATT 7 cut(s) 130, 232, 394, 406, 437, 642, 719
TfiI GAWTC 3 cut(s) 5, 40, 862
Tru1I TTAA 5 cut(s) 198, 231, 315, 393, 693
Tru9I TTAA 5 cut(s) 198, 231, 315, 393, 693
TscAI CASTG 2 cut(s) 173, 193
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 556
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 2 cut(s) 173, 193
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 769
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XmiI GTMKAC 1 cut(s) 539
XspI CTAG 2 cut(s) 362, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.