Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003038

Physical Location & Seq

Genomic Coordinates Forward (+)

16759495 .. 16765334

Gene Structure 5840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2649 bp

ATGGAAGATGGTGTTTTATCACCAGCTACCATGATGGGAGCTCCAGCTGATTCCACAATGGATTTAGACTTCATGGATGAATTGTTCTTAGATGGATGCTGGTTGGAAACAACAGAGGGACCTGGATTTCCTAATCAGAGTCCCCTCAGTTCTGGCGCTATCATGGACTCCTCATTTTTCTGGCCTACATCAGGGACCAATGGAAATTTCGGCATGAACCCATTTCAGATCAGTAATCAAGCACAAACACCACTGTTCAATGAACTCCAGGAAGAAGCTCCAGCCAGTATGCAGTCTCCTAACCAGAATATGACAGACGTTGTGGGGTTCTCTGGTCAATCAGAAAATCCTATAATTCAAGGTCATGAATTTAGTAGAGGAATCTGGATCGGTCCCATAGAGAATCGAATTTCTGCACCATCTGTGATGGAGAGATTAAAGAGGGCACTTGTGTACATGAAAGATGTCATGAGAGACAAAAATGTTCTTGTACAGGTATGGCTGCCAGTGAATAGAGGGGGTAGACGTGTTTTAACAACTAATGATCTACTTTCGTCACTTGATTCTAGCTGTCCAAGGCTCGCCAAGTATCACGACATATCTGTGAATTATCAGTTCTCAACTGGAGAAGATTCTAAGGAGTTAGTTAAGGGCTTGCCTGGTCGGGTTTTCTCGGCAAAGGTACCTGAGTGGACTCCTGATGTTCGATTTTTCAGGAATGACGAGTACCCACGGGTTGATGATGCTCAACGGTATGATGTACGTGGAACTCTTGCCCTTCCAATCTTTGAACAAGGTAGTAGGACTTGCTTGGGTGTAATTGAGGTTGTCACAACCACCCAGAAGGTGCAGTATCAACCTGAGCTTGAAAGTGTTTGCAAGGCCCTTGAGGCTGTTGATCTTCGGAGTTCAGAAAATTTGAATACTCATAATATTAAGCAGGTAAATGGCAAGCCTTACCAAGCTGTATTACCTGAGATCCGAGAGGTCTTGAGATCTGCATGTGAAACACACAACTTGCCCTTGGCACAAACTTGGGTGTCATGCATCCAACAAGCCAAAGATGGATGCCGACATTCTGATGACAACTACGTTCATTGTGTTTCAACTGTGGATCAAGCTTGCCATGTGACTGATCCTCATATCCGGGGTTTTCATGAAGCTTGCTCTGAGCATCACTTGTTAAAAGGCCAAGGCATTGTTGGGAGAGCTTTTATGACTAATCAACCATGCTTCTCAAATGATATAACTTCCTTAGCCAAAACAGAGTATCCTTTATCCCACCATGCTAGGATGTTTGGATTGCATGCAGCTGTTGCAATACGTCTACGGAGCATCGACACTGGTTCAACTGATTTTGTCCTGGAGTTCTTCTTGCCAGTGGATTGCAGGGATCCTGAAGAACACAAGAAGATGCTAACTTCTCTGTCTTTAATCATACAAAATATCTGCCGGAGCTTACGGGTTGTCACAGACAAAGAACTAGAGGAAGAAATAGATTTGCCAGTCAGTGAAGTGATCGTTCCTTCAGATCCCAGGCCTAGTGGCATTGCCTCTTTTGCAGAGGTGCAACAGACTGATAATGATGTCTCCATATTCCCAAAGGAAAAGGCAAGGAAGATGCCAAGTGCGAAATCCTCAAAGTTGATGCCACAAGACTTGAACGTAAAAGGTGTTGACTGTGTTGGAGAGTTTTCTACAATTGTTGAGGGTAGCTTCTCAAGTGTTGGTGCAAGTAAGACAGGAGAGAAAAGACGTACCAAAGCGGAGAAAGCTATCACCTTGGAAGTTCTTCGAAAATATTTTTCTGGTAGCCTGAAAGATGCGGCAAAAAGTCTTGGAGTTTGCTCCACAACCTTGAAAAGGATATGCCGACAACATGGAATTAAGCGTTGGCCATCTCGGAAAATCAAGAAGGTTGGTCACTCCTTAGAGAAACTGCAACGTGTAATTGATTCAGTCCAAGGTGCGTCCAGTGCTTTCCAAATCAATTCTTTCTATACAAACTATCCAGAGCTAGCCTCTCCAAATTTGTCTGGGACCAGTCCGTTTTCAACTTCAAAGCTGATTGATCGGCCAAGGCCATCAGACGTGCCACCTGATGGTGGTGTTTTGAGTCCCCAAGCTACTGCATCAAAATCTCCCTCGTCTTCATGTAGTCAGAGTACCAGTTCAAGCCAGTGCTGTTCCAGCAAGACAGAGCAGCATCTTCCCACATGGAGCGTCGCAGGTAATGATGATCCAATTGTTGGAGATAACAGAATGTTGAAGAGGGTCAGAAGTGAAGCAGAGTTGGATGCGCTTCGTCAAGATGGAGTGGATGAGCTAATGCAAAGATCCCAGAGCCATAAAAATCTAAGTGAGCAACAAAAGTTGCAGTCTTTTCAACCTTCACTGAAATATGATGGCCAGATAGCTCAAGAAGGGGATGCTCGAAAAGTAAAAGTCACTTATGGAGATGAGAAAACTCGGTTTCGCATTCAAAATAACTGGAAGTATGAAGATTTGGGGCAAGAAATAGCAAAGCGATTTGATTTGGAGGAGTGCCTTGATGTATGTCGCTCTTCACGATGCAGTACAATTAAGCTCTCCCTCCAGCTTTCTCGTCGGCAGTTAGAAAGGTTCTCAGGTAGCAGTGGCCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

883

Amino Acids

98.01

Weight (kDa)

6.3

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	316 - 488	3.5e-85	NLP protein GAF domain
RWP-RK	PF02042	593 - 640	1.3e-23	RWP-RK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20640 AT1G20640 AT1G20640 AT1G76350 AT1G76350 AT1G76350 AT1G76350
fragaria_vesca	FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270
malus_domestica	MD06G1009200.v1.1 MD16G1285500.v1.1
prunus_persica	Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1
pyrus_communis	pycom06g00770 pycom16g25880
rosa_chinensis	RchiOBHm_Chr7g0215411
rosa_laevigata	RLG00000002660 RLG00000002663
rosa_multiflora	Rmu_co8448299.1_g000001 Rmu_sc0000355.1_g000001 Rmu_sc0005928.1_g000011
rosa_roxburghii	Rroxscaffold_3G00244210
rosa_rugosa	Rorug07G0153300 Rorug07G0153400
rosa_samantha	Rh7AG289800 Rh7BG281700 Rh7CG309400 Rh7DG293400
rosa_wichuraiana	Rw7G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	931, 2219
Acc65I	GGTACC	1 cut(s)	682
AccB1I	GGYRCC	1 cut(s)	682
AccB7I	CCANNNNNTGG	2 cut(s)	2102, 2249
AccI	GTMKAC	2 cut(s)	523, 1327
AciI	CCGC	2 cut(s)	1766, 1826
AclWI	GGATC	9 cut(s)	395, 973, 1122, 1130, 1388, 1401, 1526, 2234, 2331
AcoI	YGGCCR	3 cut(s)	1895, 2075, 2407
AcsI	RAATTY	5 cut(s)	205, 368, 408, 916, 2029
AcuI	CTGAAG	2 cut(s)	1419, 1512
AfaI	GTAC	8 cut(s)	455, 492, 684, 728, 762, 1759, 2167, 2578
AfiI	CCNNNNNNNGG	5 cut(s)	191, 1863, 2102, 2105, 2249
AflIII	ACRYGT	2 cut(s)	526, 1945
AjiI	CACGTC	2 cut(s)	527, 2092
AjnI	CCWGG	5 cut(s)	121, 267, 658, 1362, 1535
AjuI	GAANNNNNNNTTGG	4 cut(s)	191, 223, 1876, 1908
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	3 cut(s)	300, 468, 1594
AlwI	GGATC	9 cut(s)	395, 973, 1122, 1130, 1388, 1401, 1526, 2234, 2331
AoxI	GGCC	9 cut(s)	182, 882, 1189, 1538, 1895, 2075, 2081, 2407, 2638
ApeKI	GCWGC	3 cut(s)	502, 1310, 2203
ApoI	RAATTY	5 cut(s)	205, 368, 408, 916, 2029
Asp700I	GAANNNNTTC	1 cut(s)	1791
Asp718I	GGTACC	1 cut(s)	682
AspLEI	GCGC	2 cut(s)	158, 2302
AspS9I	GGNCC	6 cut(s)	119, 195, 392, 883, 2040, 2639
AsuC2I	CCSGG	1 cut(s)	1148
AsuHPI	GGTGA	2 cut(s)	12, 1771
AsuII	TTCGAA	1 cut(s)	1795
AsuNHI	GCTAGC	1 cut(s)	2017
AvaII	GGWCC	4 cut(s)	119, 195, 392, 2040
BaeGI	GKGCMC	1 cut(s)	448
BaeI	ACNNNNGTAYC	2 cut(s)	674, 707
BalI	TGGCCA	2 cut(s)	1897, 2409
BamHI	GGATCC	1 cut(s)	1393
BanI	GGYRCC	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	2142
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	489, 1322, 2215
BciT130I	CCWGG	5 cut(s)	123, 269, 660, 1364, 1537
BciVI	GTATCC	1 cut(s)	1281
BcnI	CCSGG	1 cut(s)	1148
BcoDI	GTCTC	3 cut(s)	300, 468, 1594
BfaI	CTAG	5 cut(s)	567, 1290, 1484, 1542, 2018
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	2 cut(s)	931, 2219
BfuI	GTATCC	1 cut(s)	1281
BglI	GCCNNNNNGGC	1 cut(s)	890
BglII	AGATCT	1 cut(s)	995
BisI	GCNGC	4 cut(s)	503, 1311, 1827, 2204
BlsI	GCNGC	4 cut(s)	504, 1312, 1828, 2205
Bme1390I	CCNGG	6 cut(s)	123, 269, 660, 1148, 1364, 1537
Bme18I	GGWCC	4 cut(s)	119, 195, 392, 2040
BmgBI	CACGTC	2 cut(s)	527, 2092
BmgT120I	GGNCC	6 cut(s)	119, 195, 392, 883, 2040, 2639
BmiI	GGNNCC	6 cut(s)	120, 196, 394, 684, 1395, 2041
BmrFI	CCNGG	6 cut(s)	123, 269, 660, 1148, 1364, 1537
BmtI	GCTAGC	1 cut(s)	2021
BpiI	GAAGAC	1 cut(s)	2142
BplI	GAGNNNNNCTC	2 cut(s)	2006, 2038
BpmI	CTGGAG	6 cut(s)	27, 251, 264, 645, 1385, 2579
Bpu10I	CCTNAGC	2 cut(s)	861, 1255
Bpu14I	TTCGAA	1 cut(s)	1795
BpuEI	CTTGAG	4 cut(s)	908, 1012, 1705, 2403
BpuMI	CCSGG	1 cut(s)	1148
BsaAI	YACGTR	1 cut(s)	764
BsaJI	CCNNGG	9 cut(s)	575, 731, 1023, 1147, 1192, 1535, 1782, 1963, 2078
Bsc4I	CCNNNNNNNGG	5 cut(s)	191, 1863, 2102, 2105, 2249
Bse3DI	GCAATG	1 cut(s)	1548
BseBI	CCWGG	5 cut(s)	123, 269, 660, 1364, 1537
BseDI	CCNNGG	9 cut(s)	575, 731, 1023, 1147, 1192, 1535, 1782, 1963, 2078
BseGI	GGATG	8 cut(s)	82, 101, 1047, 1073, 1299, 2302, 2326, 2434
BseLI	CCNNNNNNNGG	5 cut(s)	191, 1863, 2102, 2105, 2249
BseMI	GCAATG	1 cut(s)	1548
BseMII	CTCAG	6 cut(s)	160, 678, 852, 966, 1161, 2640
BseRI	GAGGAG	2 cut(s)	160, 2555
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	489, 1322, 2215
BsgI	GTGCAG	2 cut(s)	399, 869
BshFI	GGCC	9 cut(s)	184, 884, 1191, 1540, 1897, 2077, 2083, 2409, 2640
BshNI	GGYRCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	1147, 1453
BslFI	GGGAC	6 cut(s)	126, 132, 208, 378, 2053, 2103
BslI	CCNNNNNNNGG	5 cut(s)	191, 1863, 2102, 2105, 2249
BsmAI	GTCTC	3 cut(s)	300, 468, 1594
BsmFI	GGGAC	6 cut(s)	126, 132, 208, 378, 2053, 2103
BsmI	GAATGC	1 cut(s)	2478
BsnI	GGCC	9 cut(s)	184, 884, 1191, 1540, 1897, 2077, 2083, 2409, 2640
Bsp119I	TTCGAA	1 cut(s)	1795
Bsp1286I	GDGCHC	2 cut(s)	43, 448
Bsp1407I	TGTACA	2 cut(s)	453, 490
BspACI	CCGC	2 cut(s)	1766, 1826
BspANI	GGCC	9 cut(s)	184, 884, 1191, 1540, 1897, 2077, 2083, 2409, 2640
BspCNI	CTCAG	6 cut(s)	159, 679, 853, 967, 1162, 2639
BspHI	TCATGA	3 cut(s)	364, 468, 1156
BspLI	GGNNCC	6 cut(s)	120, 196, 394, 684, 1395, 2041
BspMI	ACCTGC	2 cut(s)	931, 2219
BspOI	GCTAGC	1 cut(s)	2021
BspPI	GGATC	9 cut(s)	395, 973, 1122, 1130, 1388, 1401, 1526, 2234, 2331
BspQI	GCTCTTC	1 cut(s)	2569
BspT104I	TTCGAA	1 cut(s)	1795
BspT107I	GGYRCC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	1548
BsrGI	TGTACA	2 cut(s)	453, 490
BssECI	CCNNGG	9 cut(s)	575, 731, 1023, 1147, 1192, 1535, 1782, 1963, 2078
BssT1I	CCWWGG	6 cut(s)	575, 1023, 1192, 1782, 1963, 2078
Bst2UI	CCWGG	5 cut(s)	123, 269, 660, 1364, 1537
Bst4CI	ACNGT	4 cut(s)	255, 753, 1111, 1682
Bst6I	CTCTTC	2 cut(s)	2264, 2569
BstAPI	GCANNNNNTGC	1 cut(s)	1316
BstAUI	TGTACA	2 cut(s)	453, 490
BstBAI	YACGTR	1 cut(s)	764
BstBI	TTCGAA	1 cut(s)	1795
BstC8I	GCNNGC	7 cut(s)	582, 656, 953, 1123, 1165, 1308, 2019
BstDSI	CCRYGG	1 cut(s)	731
BstENI	CCTNNNNNAGG	2 cut(s)	189, 1861
BstF5I	GGATG	8 cut(s)	82, 101, 1047, 1073, 1299, 2302, 2326, 2434
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	158, 2302
BstMAI	GTCTC	3 cut(s)	300, 468, 1594
BstMWI	GCNNNNNNNGC	6 cut(s)	890, 1316, 1559, 1772, 1976, 2190
BstNI	CCWGG	5 cut(s)	123, 269, 660, 1364, 1537
BstNSI	RCATGY	2 cut(s)	1005, 1310
BstSCI	CCNGG	6 cut(s)	121, 267, 658, 1146, 1362, 1535
BstSLI	GKGCMC	1 cut(s)	448
BstV1I	GCAGC	3 cut(s)	489, 1322, 2215
BstV2I	GAAGAC	1 cut(s)	2142
BstX2I	RGATCY	5 cut(s)	978, 995, 1393, 1531, 2336
BstYI	RGATCY	5 cut(s)	978, 995, 1393, 1531, 2336
BsuI	GTATCC	1 cut(s)	1281
BsuRI	GGCC	9 cut(s)	184, 884, 1191, 1540, 1897, 2077, 2083, 2409, 2640
BtgI	CCRYGG	1 cut(s)	731
BtrI	CACGTC	2 cut(s)	527, 2092
BtsCI	GGATG	8 cut(s)	82, 101, 1047, 1073, 1299, 2302, 2326, 2434
BtsI	GCAGTG	1 cut(s)	2641
BtsIMutI	CAGTG	9 cut(s)	251, 513, 1341, 1386, 1516, 1981, 2186, 2393, 2641
BveI	ACCTGC	2 cut(s)	931, 2219
Cac8I	GCNNGC	7 cut(s)	582, 656, 953, 1123, 1165, 1308, 2019
CciI	TCATGA	3 cut(s)	364, 468, 1156
CfoI	GCGC	2 cut(s)	158, 2302
Cfr13I	GGNCC	6 cut(s)	119, 195, 392, 883, 2040, 2639
CseI	GACGC	2 cut(s)	1959, 2212
Csp6I	GTAC	8 cut(s)	454, 491, 683, 727, 761, 1758, 2166, 2577
CspCI	CAANNNNNGTGG	2 cut(s)	1641, 1676
CviQI	GTAC	8 cut(s)	454, 491, 683, 727, 761, 1758, 2166, 2577
EaeI	YGGCCR	3 cut(s)	1895, 2075, 2407
Eam1104I	CTCTTC	2 cut(s)	2264, 2569
EarI	CTCTTC	2 cut(s)	2264, 2569
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	6 cut(s)	575, 1023, 1192, 1782, 1963, 2078
Eco147I	AGGCCT	1 cut(s)	1540
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	4 cut(s)	119, 195, 392, 2040
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	1419, 1512
EcoICRI	GAGCTC	1 cut(s)	41
EcoNI	CCTNNNNNAGG	2 cut(s)	189, 1861
EcoO109I	RGGNCCY	2 cut(s)	119, 883
EcoRII	CCWGG	5 cut(s)	121, 267, 658, 1362, 1535
EcoT14I	CCWWGG	6 cut(s)	575, 1023, 1192, 1782, 1963, 2078
EcoT22I	ATGCAT	1 cut(s)	1049
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	6 cut(s)	575, 1023, 1192, 1782, 1963, 2078
FaqI	GGGAC	6 cut(s)	126, 132, 208, 378, 2053, 2103
FblI	GTMKAC	2 cut(s)	523, 1327
Fnu4HI	GCNGC	4 cut(s)	503, 1311, 1827, 2204
FokI	GGATG	8 cut(s)	89, 108, 1034, 1080, 1306, 2309, 2333, 2441
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	4 cut(s)	503, 1311, 1827, 2204
FspBI	CTAG	5 cut(s)	567, 1290, 1484, 1542, 2018
GlaI	GCGC	2 cut(s)	157, 2301
GluI	GCNGC	4 cut(s)	503, 1311, 1827, 2204
GsuI	CTGGAG	6 cut(s)	27, 251, 264, 645, 1385, 2579
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	9 cut(s)	184, 884, 1191, 1540, 1897, 2077, 2083, 2409, 2640
HapII	CCGG	2 cut(s)	1147, 1453
HgaI	GACGC	2 cut(s)	1959, 2212
HhaI	GCGC	2 cut(s)	158, 2302
Hin6I	GCGC	2 cut(s)	156, 2300
HinP1I	GCGC	2 cut(s)	156, 2300
HincII	GTYRAC	1 cut(s)	1678
HindII	GTYRAC	1 cut(s)	1678
HindIII	AAGCTT	2 cut(s)	1119, 1161
HpaII	CCGG	2 cut(s)	1147, 1453
HphI	GGTGA	2 cut(s)	12, 1771
Hpy166II	GTNNAC	5 cut(s)	454, 524, 693, 1328, 1678
Hpy8I	GTNNAC	5 cut(s)	454, 524, 693, 1328, 1678
Hpy99I	CGWCG	2 cut(s)	2228, 2610
HpyAV	CCTTC	6 cut(s)	788, 838, 1536, 1909, 2400, 2417
HpyCH4III	ACNGT	4 cut(s)	255, 753, 1111, 1682
HpyCH4IV	ACGT	9 cut(s)	318, 526, 763, 1092, 1324, 1665, 1756, 1945, 2091
HpyF10VI	GCNNNNNNNGC	6 cut(s)	890, 1316, 1559, 1772, 1976, 2190
HpySE526I	ACGT	9 cut(s)	318, 526, 763, 1092, 1324, 1665, 1756, 1945, 2091
HspAI	GCGC	2 cut(s)	156, 2300
KpnI	GGTACC	1 cut(s)	686
LguI	GCTCTTC	1 cut(s)	2569
LmnI	GCTCC	7 cut(s)	38, 46, 283, 1332, 1455, 1853, 2220
Lsp1109I	GCAGC	3 cut(s)	489, 1322, 2215
MaeI	CTAG	5 cut(s)	567, 1290, 1484, 1542, 2018
MaeII	ACGT	9 cut(s)	318, 526, 763, 1092, 1324, 1665, 1756, 1945, 2091
MaeIII	GTNAC	6 cut(s)	555, 829, 1129, 1468, 1922, 2446
MfeI	CAATTG	2 cut(s)	1701, 2244
MflI	RGATCY	5 cut(s)	978, 995, 1393, 1531, 2336
MhlI	GDGCHC	2 cut(s)	43, 448
MlsI	TGGCCA	2 cut(s)	1897, 2409
MluNI	TGGCCA	2 cut(s)	1897, 2409
MlyI	GAGTC	4 cut(s)	148, 161, 688, 2125
MmeI	TCCRAC	5 cut(s)	84, 1075, 1666, 2230, 2274
Mox20I	TGGCCA	2 cut(s)	1897, 2409
Mph1103I	ATGCAT	1 cut(s)	1049
MroXI	GAANNNNTTC	1 cut(s)	1791
MscI	TGGCCA	2 cut(s)	1897, 2409
MseI	TTAA	8 cut(s)	437, 533, 648, 936, 1184, 1433, 1887, 2583
MslI	CAYNNNNRTG	2 cut(s)	602, 1080
Msp20I	TGGCCA	2 cut(s)	1897, 2409
MspA1I	CMGCKG	2 cut(s)	47, 1313
MspI	CCGG	2 cut(s)	1147, 1453
MspR9I	CCNGG	6 cut(s)	123, 269, 660, 1148, 1364, 1537
MunI	CAATTG	2 cut(s)	1701, 2244
Mva1269I	GAATGC	1 cut(s)	2478
MvaI	CCWGG	5 cut(s)	123, 269, 660, 1364, 1537
MwoI	GCNNNNNNNGC	6 cut(s)	890, 1316, 1559, 1772, 1976, 2190
NciI	CCSGG	1 cut(s)	1148
NheI	GCTAGC	1 cut(s)	2017
NlaIV	GGNNCC	6 cut(s)	120, 196, 394, 684, 1395, 2041
NmeAIII	GCCGAG	1 cut(s)	653
NmuCI	GTSAC	6 cut(s)	555, 829, 1129, 1468, 1922, 2446
NsiI	ATGCAT	1 cut(s)	1049
NspI	RCATGY	2 cut(s)	1005, 1310
NspV	TTCGAA	1 cut(s)	1795
PaeI	GCATGC	1 cut(s)	1310
PagI	TCATGA	3 cut(s)	364, 468, 1156
PceI	AGGCCT	1 cut(s)	1540
PciSI	GCTCTTC	1 cut(s)	2569
PcsI	WCGNNNNNNNCGW	1 cut(s)	2566
PctI	GAATGC	1 cut(s)	2478
PdmI	GAANNNNTTC	1 cut(s)	1791
PfeI	GAWTC	6 cut(s)	50, 381, 403, 563, 632, 1955
PflMI	CCANNNNNTGG	2 cut(s)	2102, 2249
PfoI	TCCNGGA	2 cut(s)	267, 1362
PkrI	GCNGC	4 cut(s)	504, 1312, 1828, 2205
PleI	GAGTC	4 cut(s)	147, 161, 688, 2124
PpsI	GAGTC	4 cut(s)	147, 161, 688, 2124
Ppu21I	YACGTR	1 cut(s)	764
PpuMI	RGGWCCY	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	5 cut(s)	121, 267, 658, 1362, 1535
PspGI	CCWGG	5 cut(s)	121, 267, 658, 1362, 1535
PspN4I	GGNNCC	6 cut(s)	120, 196, 394, 684, 1395, 2041
PspPI	GGNCC	6 cut(s)	119, 195, 392, 883, 2040, 2639
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	5 cut(s)	978, 995, 1393, 1531, 2336
PvuII	CAGCTG	2 cut(s)	47, 1313
RsaI	GTAC	8 cut(s)	455, 492, 684, 728, 762, 1759, 2167, 2578
RsaNI	GTAC	8 cut(s)	454, 491, 683, 727, 761, 1758, 2166, 2577
RseI	CAYNNNNRTG	2 cut(s)	602, 1080
SacI	GAGCTC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	2569
SaqAI	TTAA	8 cut(s)	437, 533, 648, 936, 1184, 1433, 1887, 2583
SatI	GCNGC	4 cut(s)	503, 1311, 1827, 2204
Sau96I	GGNCC	6 cut(s)	119, 195, 392, 883, 2040, 2639
SchI	GAGTC	4 cut(s)	148, 161, 688, 2125
ScrFI	CCNGG	6 cut(s)	123, 269, 660, 1148, 1364, 1537
SduI	GDGCHC	2 cut(s)	43, 448
SfuI	TTCGAA	1 cut(s)	1795
SinI	GGWCC	4 cut(s)	119, 195, 392, 2040
SmiMI	CAYNNNNRTG	2 cut(s)	602, 1080
SmlI	CTYRAG	4 cut(s)	887, 991, 1720, 2418
SmoI	CTYRAG	4 cut(s)	887, 991, 1720, 2418
SphI	GCATGC	1 cut(s)	1310
SseBI	AGGCCT	1 cut(s)	1540
SsiI	CCGC	2 cut(s)	1766, 1826
SspI	AATATT	2 cut(s)	934, 1802
SspMI	CTAG	5 cut(s)	567, 1290, 1484, 1542, 2018
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	1540
StyD4I	CCNGG	6 cut(s)	121, 267, 658, 1146, 1362, 1535
StyI	CCWWGG	6 cut(s)	575, 1023, 1192, 1782, 1963, 2078
TaaI	ACNGT	4 cut(s)	255, 753, 1111, 1682
TaiI	ACGT	9 cut(s)	321, 529, 766, 1095, 1327, 1668, 1759, 1948, 2094
TaqI	TCGA	5 cut(s)	406, 706, 1338, 1795, 2434
TaqII	GACCGA	1 cut(s)	380
TatI	WGTACW	3 cut(s)	453, 490, 2576
TauI	GCSGC	1 cut(s)	1829
TfiI	GAWTC	6 cut(s)	50, 381, 403, 563, 632, 1955
Tru1I	TTAA	8 cut(s)	437, 533, 648, 936, 1184, 1433, 1887, 2583
Tru9I	TTAA	8 cut(s)	437, 533, 648, 936, 1184, 1433, 1887, 2583
TscAI	CASTG	9 cut(s)	258, 513, 1348, 1386, 1516, 1981, 2186, 2400, 2641
TseFI	GTSAC	6 cut(s)	555, 829, 1129, 1468, 1922, 2446
TseI	GCWGC	3 cut(s)	502, 1310, 2203
Tsp45I	GTSAC	6 cut(s)	555, 829, 1129, 1468, 1922, 2446
TspGWI	ACGGA	2 cut(s)	1345, 2037
TspRI	CASTG	9 cut(s)	258, 513, 1348, 1386, 1516, 1981, 2186, 2400, 2641
Van91I	CCANNNNNTGG	2 cut(s)	2102, 2249
VpaK11BI	GGWCC	4 cut(s)	119, 195, 392, 2040
XagI	CCTNNNNNAGG	2 cut(s)	189, 1861
XapI	RAATTY	5 cut(s)	205, 368, 408, 916, 2029
XceI	RCATGY	2 cut(s)	1005, 1310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1199
XmiI	GTMKAC	2 cut(s)	523, 1327
XmnI	GAANNNNTTC	1 cut(s)	1791
XspI	CTAG	5 cut(s)	567, 1290, 1484, 1542, 2018
Zsp2I	ATGCAT	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.