Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003038

Physical Location & Seq

Genomic Coordinates Reverse (-)

40716700 .. 40722086

Gene Structure 5387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1285500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGGATGATGGCGTTCTGTCACCAGCTACCATGCTGGGAGCTCAACCTGATTCCGCTATGGATTTGGATTTCATGGATGAACTCTTCTTAGAGGGATGCTGGTTGGAAGCGAGAGATGGACCTGAGTTTCCTAATCAGAGCCTCCCCAATACCCCCTTGAACCCCTCCTTTTTTTGGCATACGTTGGAGACCAATGGCAATATGGCCATGACCCCGTCTCAAAACAGTAATCAAGAGGAGATGCAAACCCCATTCTTTAAACAACTCGAGGAAGGTCCTGTGAATCCTCAGTCTCCTTGCCAGAGTATGATAGAAGATGTTGTGGCCTACTCTGGTCAATCAGAGGATCCTACAATAGGTCGTGAATTGAGCAGAAGGTGGTGGATTGGTCCCACTGGAAATGATGGGTCTGCATCATCTGTGACGCAGAGATTAATGACGGCACTCATGTACATCAGAGAGGTCATGAGAAACAAAGATGTCCTAGTACAAGTATGGGTGCCAGTGAATAGAGGGGGTAGAGATGTTTTAACAACGAATGAACTTTTCTGTCTTGATCCTAACTGTTCCAGGCTTGCTAAATATCGAGATATCTCTGTTAATTACCAGTTCTCAACTGGGGAGGATTCAACAGAGATGGTCAAGGGATTGCCTGGCCGGGTTTTCTCGGGTAAGGTTCCTGAGTGGACTCCTGATGCTCGATATTTTACAAGTGATGAATATCCACGGGTTGGCTATGCTCAACAGTATGATGTAAGTGGAACTCTAGCCCTTCCAATCTTTGAACAAGGTAGTAGGACTTGCTTGGGTGTAATTGAGGTTGTTACGACCGACCAGAAGATAAGGTATCAACCTGACATTGATGGCATTTGCAAGGCACTTGAGGCTGTTGATCTTCGAAGTTCTAGAAATTTGAGTACTGAAAATGTAAAGGGGTGTGACAAGCCCTATCACGCTGCGTTACCTGAGATCCAAGAGATCTTGAGATCTGCATGTGAGACGCACAAATTGCCCTTGGCACAAACCTGGGTGTCATGCATCGAACAGGGTAAAGATGGGTGTCGACATTCTGATGACAACTACATCCACTGTGTTTCAACTGTGGATCATGCTTGTCATGTGGCTGATCCTTATATCCAGGGTTTTCATGAAGCGTGCTCTGAGCATCACTTGCTAAGAGGCCAAGGCATCGTTGGAAGAGCTTTTATGACCAATCAGCCATGTTTCTCAGATGATATAACTTCCTTTTTCAAGACAGAGTATCCTCTATCTCACCATGCCAGGATGTTCAATTTGCATGCAGCTGTTGCAATACGTCTACGGAGCACCGACACTAGTTCAACTGATTTTGTCCTGGAGTTCTTCTTGCCACTGGAGTGCAGGGATCCTAAAGAACAGAAAAAGATGCTTAATTCACTGTCCTTGATTATACAACAGACATGCCGGAGCTTACGGGTTGTCACAGACAAGGAAGTTGAGGAGGAAACTAAATTTCATGTCAGTGAGGTGATAGTCCCGTCAGATCCCGGACCAAGTAATATTGCCTGTTTCACAGAGGTCCAACAGAATGGTAATGCTGTCTCAATGTTCCCAAACAAAAAACAACGCAAGGTGCTGAGTGTGAAATTGTCGAAATTAAGGCAGCATCAGGAATATTCAAACCTAAAAAGTGTTGAGTGTGGAGAAGAGTTTTCTGTTTTGGGTGAGGGTGAGGGTAGCTTTTCAACTGTTGGTGCGAGTAAGACAAGAGAGAAAAGACGTGCCAAGGCAGAAAAAGATATCAACTTGCAAGTTCTTCGAAAATATTTTTCCGGTAGTCTAAAAGATGCTGCAAAGAGTATTGGAGTTTGCTCAACAACCTTGAAAAGGATATGCAGACAACATGGGATTAAACGTTGGCCATCTCGAAAAATAAAGAAGGTTGGTCACTCTTTACAGAAACTCCAACGTGTAATCGACTCAGTTGAAGGCGCATCTGGTGCTTTCCAAATCAACTCTTTCTATACGAACTTCCCAGAGCTAACGTCTCCAAAGTTATTGGGGACCAGCCCATTTTCAAATTCAAAGCTGAGTGACCAACCAAATCAGGAAAACTTGTCACCTGAAGGTGGTGATTTTAGCCCCCAAGCTACCGCATCAAAATCTCCCCCATCTTCGTGCAGTCAGAATTCCAGTTCAAGCCAATGCTGTTCCAGCAAGACACGGCAACATCCCTTCTCATGTAACGTTGCTGGTAATGATGATCCAGTTGGAGATAACTCAAGAGATGGTGTGCTAAAGAGGGTTAGAAGTGAGGCAGGATTGCATGATTTTTGCCAAGATCGAACGGAGCTACTGCCAAGATCCCAGAGCCAGAAAATTCTCTCTGAGCAACAAAATCTGCAGTCGATTCCACCTTCACTGAAAAATAATGGCCGGGTAGCTCAAGTAGAGGTTCAAAGAGTAAAAGTTGCATATGGGGATGAGAAAACCCGGTTCCGCATGCAGAGTAATTGGAGATATGAAGATTTGGTGCAAGAAATCGCAAAGCGATTTAGCATACAAGACATGAGTAATTTTGATATAAAATACTTGGATGATGACTCAGAAAGGGTGTTGTTAACATGTGATGATGATTTAGAGGAGTGTGTGGATGTATGCCGATCTTCACAGAGCCACACAATTAAGCTCTCTCTCCAGATTTCTCGTCACCATTTGAAAGGTTTGATAGGTAGACCGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

908

Amino Acids

101.67

Weight (kDa)

5.99

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	313 - 485	1.3e-84	NLP protein GAF domain
RWP-RK	PF02042	593 - 641	2.9e-22	RWP-RK domain
PB1	PF00564	814 - 893	3.2e-21	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20640 AT1G20640 AT1G20640 AT1G76350 AT1G76350 AT1G76350 AT1G76350
fragaria_vesca	FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270
malus_domestica	MD06G1009200.v1.1 MD16G1285500.v1.1
prunus_persica	Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1
pyrus_communis	pycom06g00770 pycom16g25880
rosa_chinensis	RchiOBHm_Chr7g0215411
rosa_laevigata	RLG00000002660 RLG00000002663
rosa_multiflora	Rmu_co8448299.1_g000001 Rmu_sc0000355.1_g000001 Rmu_sc0005928.1_g000011
rosa_roxburghii	Rroxscaffold_3G00244210
rosa_rugosa	Rorug07G0153300 Rorug07G0153400
rosa_samantha	Rh7AG289800 Rh7BG281700 Rh7CG309400 Rh7DG293400
rosa_wichuraiana	Rw7G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccI	GTMKAC	3 cut(s)	1063, 1318, 2713
AciI	CCGC	3 cut(s)	54, 2133, 2479
AclI	AACGTT	2 cut(s)	1894, 2226
AcoI	YGGCCR	4 cut(s)	204, 655, 1898, 2413
AcsI	RAATTY	5 cut(s)	910, 1490, 2059, 2167, 2358
AcuI	CTGAAG	1 cut(s)	2124
AfaI	GTAC	3 cut(s)	452, 489, 919
AfiI	CCNNNNNNNGG	5 cut(s)	174, 356, 731, 1866, 2108
AflIII	ACRYGT	2 cut(s)	1948, 2603
AhlI	ACTAGT	1 cut(s)	1334
AjiI	CACGTC	1 cut(s)	1760
AjnI	CCWGG	6 cut(s)	569, 652, 1025, 1137, 1280, 1353
AleI	CACNNNNGTG	1 cut(s)	1375
Alw21I	GWGCWC	3 cut(s)	43, 1160, 1328
Alw26I	GTCTC	6 cut(s)	182, 222, 297, 992, 1585, 2031
Ama87I	CYCGRG	2 cut(s)	266, 667
AoxI	GGCC	6 cut(s)	204, 324, 655, 1180, 1898, 2413
ApeKI	GCWGC	4 cut(s)	956, 1301, 1642, 1829
ApoI	RAATTY	5 cut(s)	910, 1490, 2059, 2167, 2358
AseI	ATTAAT	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	1973
AspS9I	GGNCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
AsuC2I	CCSGG	4 cut(s)	659, 1527, 2417, 2473
AsuHPI	GGTGA	8 cut(s)	12, 1265, 1519, 1715, 1721, 2091, 2123, 2681
AsuII	TTCGAA	2 cut(s)	898, 1798
AvaI	CYCGRG	2 cut(s)	266, 667
AvaII	GGWCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
BalI	TGGCCA	2 cut(s)	206, 1900
BamHI	GGATCC	2 cut(s)	346, 1384
BanI	GGYRCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	3 cut(s)	43, 1160, 1328
BbvI	GCAGC	4 cut(s)	943, 1313, 1654, 1816
BccI	CCATC	9 cut(s)	2, 110, 398, 631, 857, 1049, 1909, 2158, 2261
BceAI	ACGGC	2 cut(s)	456, 2219
BcgI	CGANNNNNNTGC	2 cut(s)	1778, 1812
BciT130I	CCWGG	6 cut(s)	571, 654, 1027, 1139, 1282, 1355
BciVI	GTATCC	1 cut(s)	1272
BcnI	CCSGG	4 cut(s)	659, 1527, 2417, 2473
BcoDI	GTCTC	6 cut(s)	182, 222, 297, 992, 1585, 2031
BcuI	ACTAGT	1 cut(s)	1334
BfaI	CTAG	4 cut(s)	485, 767, 906, 1335
BfmI	CTRYAG	1 cut(s)	2381
BfuI	GTATCC	1 cut(s)	1272
BglII	AGATCT	2 cut(s)	978, 986
BisI	GCNGC	4 cut(s)	957, 1302, 1643, 1830
BlsI	GCNGC	4 cut(s)	958, 1303, 1644, 1831
BmcAI	AGTACT	1 cut(s)	919
Bme18I	GGWCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
BmeT110I	CYCGRG	2 cut(s)	266, 667
BmgBI	CACGTC	1 cut(s)	1760
BmgT120I	GGNCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
BmiI	GGNNCC	7 cut(s)	348, 391, 501, 678, 1386, 2044, 2477
BmrI	ACTGGG	1 cut(s)	627
BmuI	ACTGGG	1 cut(s)	627
BpmI	CTGGAG	3 cut(s)	1376, 1394, 2660
Bpu14I	TTCGAA	2 cut(s)	898, 1798
BpuEI	CTTGAG	4 cut(s)	902, 1003, 2245, 2409
BpuMI	CCSGG	4 cut(s)	659, 1527, 2417, 2473
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	6 cut(s)	725, 1014, 1026, 1138, 1183, 1764
BsaWI	WCCGGW	1 cut(s)	1811
BsaXI	ACNNNNNCTCC	2 cut(s)	1926, 1956
Bsc4I	CCNNNNNNNGG	5 cut(s)	174, 356, 731, 1866, 2108
Bse1I	ACTGG	7 cut(s)	400, 503, 607, 622, 1377, 2172, 2246
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	6 cut(s)	571, 654, 1027, 1139, 1282, 1355
BseDI	CCNNGG	6 cut(s)	725, 1014, 1026, 1138, 1183, 1764
BseGI	GGATG	9 cut(s)	10, 82, 101, 1083, 1290, 2209, 2467, 2581, 2638
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	5 cut(s)	174, 356, 731, 1866, 2108
BseNI	ACTGG	7 cut(s)	400, 503, 607, 622, 1377, 2172, 2246
BseRI	GAGGAG	3 cut(s)	251, 1493, 2636
BseXI	GCAGC	4 cut(s)	943, 1313, 1654, 1816
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	2 cut(s)	1399, 2179
Bsh1285I	CGRYCG	1 cut(s)	831
BshFI	GGCC	6 cut(s)	206, 326, 657, 1182, 1900, 2415
BshNI	GGYRCC	1 cut(s)	499
BsiEI	CGRYCG	1 cut(s)	831
BsiHKAI	GWGCWC	3 cut(s)	43, 1160, 1328
BsiHKCI	CYCGRG	2 cut(s)	266, 667
BsiSI	CCGG	6 cut(s)	658, 1444, 1527, 1812, 2416, 2473
BslFI	GGGAC	3 cut(s)	375, 1499, 2056
BslI	CCNNNNNNNGG	5 cut(s)	174, 356, 731, 1866, 2108
BsmAI	GTCTC	6 cut(s)	182, 222, 297, 992, 1585, 2031
BsmBI	CGTCTC	3 cut(s)	222, 992, 2031
BsmFI	GGGAC	3 cut(s)	375, 1499, 2056
BsnI	GGCC	6 cut(s)	206, 326, 657, 1182, 1900, 2415
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	2 cut(s)	266, 667
Bsp119I	TTCGAA	2 cut(s)	898, 1798
Bsp1286I	GDGCHC	3 cut(s)	43, 1160, 1328
Bsp1407I	TGTACA	1 cut(s)	450
BspACI	CCGC	3 cut(s)	54, 2133, 2479
BspANI	GGCC	6 cut(s)	206, 326, 657, 1182, 1900, 2415
BspHI	TCATGA	2 cut(s)	465, 1147
BspLI	GGNNCC	7 cut(s)	348, 391, 501, 678, 1386, 2044, 2477
BspMAI	CTGCAG	1 cut(s)	2385
BspQI	GCTCTTC	1 cut(s)	1192
BspT104I	TTCGAA	2 cut(s)	898, 1798
BspT107I	GGYRCC	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	7 cut(s)	400, 503, 607, 622, 1377, 2172, 2246
BssECI	CCNNGG	6 cut(s)	725, 1014, 1026, 1138, 1183, 1764
BssT1I	CCWWGG	3 cut(s)	1014, 1183, 1764
Bst2UI	CCWGG	6 cut(s)	571, 654, 1027, 1139, 1282, 1355
Bst4CI	ACNGT	8 cut(s)	227, 566, 747, 1091, 1102, 1419, 1729, 2718
Bst6I	CTCTTC	3 cut(s)	89, 1192, 1680
BstAPI	GCANNNNNTGC	4 cut(s)	1009, 1171, 1307, 1979
BstAUI	TGTACA	1 cut(s)	450
BstBI	TTCGAA	2 cut(s)	898, 1798
BstC8I	GCNNGC	4 cut(s)	576, 1156, 1299, 2483
BstDSI	CCRYGG	1 cut(s)	725
BstENI	CCTNNNNNAGG	2 cut(s)	354, 1864
BstF5I	GGATG	9 cut(s)	10, 82, 101, 1083, 1290, 2209, 2467, 2581, 2638
BstHHI	GCGC	1 cut(s)	1973
BstMAI	GTCTC	6 cut(s)	182, 222, 297, 992, 1585, 2031
BstMCI	CGRYCG	1 cut(s)	831
BstMWI	GCNNNNNNNGC	6 cut(s)	884, 1009, 1171, 1307, 1979, 2193
BstNI	CCWGG	6 cut(s)	571, 654, 1027, 1139, 1282, 1355
BstNSI	RCATGY	5 cut(s)	996, 1301, 1443, 2485, 2607
BstSFI	CTRYAG	1 cut(s)	2381
BstV1I	GCAGC	4 cut(s)	943, 1313, 1654, 1816
BstX2I	RGATCY	7 cut(s)	346, 969, 978, 986, 1384, 1522, 2342
BstXI	CCANNNNNNTGG	1 cut(s)	1568
BstYI	RGATCY	7 cut(s)	346, 969, 978, 986, 1384, 1522, 2342
BsuI	GTATCC	1 cut(s)	1272
BsuRI	GGCC	6 cut(s)	206, 326, 657, 1182, 1900, 2415
BtgI	CCRYGG	1 cut(s)	725
BtrI	CACGTC	1 cut(s)	1760
BtsCI	GGATG	9 cut(s)	10, 82, 101, 1083, 1290, 2209, 2467, 2581, 2638
BtsIMutI	CAGTG	7 cut(s)	393, 510, 1087, 1370, 1415, 1507, 2399
Cac8I	GCNNGC	4 cut(s)	576, 1156, 1299, 2483
CciI	TCATGA	2 cut(s)	465, 1147
CfoI	GCGC	1 cut(s)	1973
Cfr13I	GGNCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
CseI	GACGC	2 cut(s)	433, 1009
Csp6I	GTAC	3 cut(s)	451, 488, 918
CviQI	GTAC	3 cut(s)	451, 488, 918
DraI	TTTAAA	1 cut(s)	259
EaeI	YGGCCR	4 cut(s)	204, 655, 1898, 2413
Eam1104I	CTCTTC	3 cut(s)	89, 1192, 1680
EarI	CTCTTC	3 cut(s)	89, 1192, 1680
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	3 cut(s)	1014, 1183, 1764
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	2 cut(s)	592, 1780
Eco47I	GGWCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	2124
Eco88I	CYCGRG	2 cut(s)	266, 667
EcoICRI	GAGCTC	1 cut(s)	41
EcoNI	CCTNNNNNAGG	2 cut(s)	354, 1864
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	2167
EcoRII	CCWGG	6 cut(s)	569, 652, 1025, 1137, 1280, 1353
EcoRV	GATATC	2 cut(s)	592, 1780
EcoT14I	CCWWGG	3 cut(s)	1014, 1183, 1764
EcoT22I	ATGCAT	1 cut(s)	1040
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	3 cut(s)	1014, 1183, 1764
Esp3I	CGTCTC	3 cut(s)	222, 992, 2031
FaqI	GGGAC	3 cut(s)	375, 1499, 2056
FauNDI	CATATG	1 cut(s)	2455
FblI	GTMKAC	3 cut(s)	1063, 1318, 2713
Fnu4HI	GCNGC	4 cut(s)	957, 1302, 1643, 1830
FokI	GGATG	9 cut(s)	17, 89, 108, 1070, 1297, 2196, 2474, 2588, 2645
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	4 cut(s)	957, 1302, 1643, 1830
FspBI	CTAG	4 cut(s)	485, 767, 906, 1335
GlaI	GCGC	1 cut(s)	1972
GluI	GCNGC	4 cut(s)	957, 1302, 1643, 1830
GsaI	CCCAGC	1 cut(s)	38
GsuI	CTGGAG	3 cut(s)	1376, 1394, 2660
HaeIII	GGCC	6 cut(s)	206, 326, 657, 1182, 1900, 2415
HapII	CCGG	6 cut(s)	658, 1444, 1527, 1812, 2416, 2473
HgaI	GACGC	2 cut(s)	433, 1009
HhaI	GCGC	1 cut(s)	1973
Hin6I	GCGC	1 cut(s)	1971
HinP1I	GCGC	1 cut(s)	1971
HincII	GTYRAC	2 cut(s)	1064, 2601
HindII	GTYRAC	2 cut(s)	1064, 2601
HinfI	GANTC	7 cut(s)	50, 283, 626, 688, 1958, 2389, 2582
HpaI	GTTAAC	1 cut(s)	2601
HpaII	CCGG	6 cut(s)	658, 1444, 1527, 1812, 2416, 2473
HphI	GGTGA	8 cut(s)	12, 1265, 1519, 1715, 1721, 2091, 2123, 2681
Hpy166II	GTNNAC	5 cut(s)	687, 1064, 1319, 2601, 2714
Hpy8I	GTNNAC	5 cut(s)	687, 1064, 1319, 2601, 2714
Hpy99I	CGWCG	1 cut(s)	2722
HpyAV	CCTTC	8 cut(s)	266, 369, 782, 1912, 1961, 2099, 2224, 2406
HpyCH4III	ACNGT	8 cut(s)	227, 566, 747, 1091, 1102, 1419, 1729, 2718
HpyCH4IV	ACGT	7 cut(s)	182, 1315, 1759, 1894, 1948, 2024, 2226
HpyF10VI	GCNNNNNNNGC	6 cut(s)	884, 1009, 1171, 1307, 1979, 2193
HpySE526I	ACGT	7 cut(s)	182, 1315, 1759, 1894, 1948, 2024, 2226
HspAI	GCGC	1 cut(s)	1971
KspAI	GTTAAC	1 cut(s)	2601
LguI	GCTCTTC	1 cut(s)	1192
LmnI	GCTCC	4 cut(s)	38, 1323, 1446, 2329
Lsp1109I	GCAGC	4 cut(s)	943, 1313, 1654, 1816
MaeI	CTAG	4 cut(s)	485, 767, 906, 1335
MaeII	ACGT	7 cut(s)	182, 1315, 1759, 1894, 1948, 2024, 2226
MflI	RGATCY	7 cut(s)	346, 969, 978, 986, 1384, 1522, 2342
MhlI	GDGCHC	3 cut(s)	43, 1160, 1328
MlsI	TGGCCA	2 cut(s)	206, 1900
MluNI	TGGCCA	2 cut(s)	206, 1900
MlyI	GAGTC	3 cut(s)	682, 1952, 2576
MmeI	TCCRAC	6 cut(s)	84, 165, 1174, 1585, 1969, 2230
Mox20I	TGGCCA	2 cut(s)	206, 1900
Mph1103I	ATGCAT	1 cut(s)	1040
MscI	TGGCCA	2 cut(s)	206, 1900
MseI	TTAA	9 cut(s)	258, 434, 530, 600, 1410, 1637, 1890, 2600, 2664
MslI	CAYNNNNRTG	4 cut(s)	1071, 1375, 1500, 2155
Msp20I	TGGCCA	2 cut(s)	206, 1900
MspA1I	CMGCKG	1 cut(s)	1304
MspI	CCGG	6 cut(s)	658, 1444, 1527, 1812, 2416, 2473
MvaI	CCWGG	6 cut(s)	571, 654, 1027, 1139, 1282, 1355
MwoI	GCNNNNNNNGC	6 cut(s)	884, 1009, 1171, 1307, 1979, 2193
NciI	CCSGG	4 cut(s)	659, 1527, 2417, 2473
NdeI	CATATG	1 cut(s)	2455
NlaIV	GGNNCC	7 cut(s)	348, 391, 501, 678, 1386, 2044, 2477
NmuCI	GTSAC	8 cut(s)	18, 421, 938, 1459, 1925, 2072, 2097, 2687
NsiI	ATGCAT	1 cut(s)	1040
NspI	RCATGY	5 cut(s)	996, 1301, 1443, 2485, 2607
NspV	TTCGAA	2 cut(s)	898, 1798
OliI	CACNNNNGTG	1 cut(s)	1375
PaeI	GCATGC	2 cut(s)	1301, 2485
PaeR7I	CTCGAG	1 cut(s)	266
PagI	TCATGA	2 cut(s)	465, 1147
PciI	ACATGT	1 cut(s)	2603
PciSI	GCTCTTC	1 cut(s)	1192
PfeI	GAWTC	4 cut(s)	50, 283, 626, 2389
PflFI	GACNNNGTC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	731
PfoI	TCCNGGA	2 cut(s)	1353, 1525
PkrI	GCNGC	4 cut(s)	958, 1303, 1644, 1831
PleI	GAGTC	3 cut(s)	682, 1952, 2576
PpsI	GAGTC	3 cut(s)	682, 1952, 2576
PpuMI	RGGWCCY	1 cut(s)	275
PscI	ACATGT	1 cut(s)	2603
PshBI	ATTAAT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	43
Psp1406I	AACGTT	2 cut(s)	1894, 2226
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	6 cut(s)	569, 652, 1025, 1137, 1280, 1353
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	6 cut(s)	569, 652, 1025, 1137, 1280, 1353
PspN4I	GGNNCC	7 cut(s)	348, 391, 501, 678, 1386, 2044, 2477
PspPI	GGNCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
PspPPI	RGGWCCY	1 cut(s)	275
PspXI	VCTCGAGB	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	2385
PsuI	RGATCY	7 cut(s)	346, 969, 978, 986, 1384, 1522, 2342
PsyI	GACNNNGTC	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	1304
RsaI	GTAC	3 cut(s)	452, 489, 919
RsaNI	GTAC	3 cut(s)	451, 488, 918
RseI	CAYNNNNRTG	4 cut(s)	1071, 1375, 1500, 2155
SacI	GAGCTC	1 cut(s)	43
SalI	GTCGAC	1 cut(s)	1062
SapI	GCTCTTC	1 cut(s)	1192
SaqAI	TTAA	9 cut(s)	258, 434, 530, 600, 1410, 1637, 1890, 2600, 2664
SatI	GCNGC	4 cut(s)	957, 1302, 1643, 1830
Sau96I	GGNCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
ScaI	AGTACT	1 cut(s)	919
SchI	GAGTC	3 cut(s)	682, 1952, 2576
SduI	GDGCHC	3 cut(s)	43, 1160, 1328
SfcI	CTRYAG	1 cut(s)	2381
Sfr274I	CTCGAG	1 cut(s)	266
SfuI	TTCGAA	2 cut(s)	898, 1798
SinI	GGWCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	4 cut(s)	1071, 1375, 1500, 2155
SmlI	CTYRAG	5 cut(s)	266, 881, 982, 2260, 2424
SmoI	CTYRAG	5 cut(s)	266, 881, 982, 2260, 2424
SpeI	ACTAGT	1 cut(s)	1334
SphI	GCATGC	2 cut(s)	1301, 2485
SsiI	CCGC	3 cut(s)	54, 2133, 2479
SspI	AATATT	3 cut(s)	1540, 1655, 1805
SspMI	CTAG	4 cut(s)	485, 767, 906, 1335
SstI	GAGCTC	1 cut(s)	43
StyI	CCWWGG	3 cut(s)	1014, 1183, 1764
TaaI	ACNGT	8 cut(s)	227, 566, 747, 1091, 1102, 1419, 1729, 2718
TaiI	ACGT	7 cut(s)	185, 1318, 1762, 1897, 1951, 2027, 2229
TaqII	GACCGA	1 cut(s)	845
TatI	WGTACW	3 cut(s)	450, 487, 917
TfiI	GAWTC	4 cut(s)	50, 283, 626, 2389
Tru1I	TTAA	9 cut(s)	258, 434, 530, 600, 1410, 1637, 1890, 2600, 2664
Tru9I	TTAA	9 cut(s)	258, 434, 530, 600, 1410, 1637, 1890, 2600, 2664
TscAI	CASTG	7 cut(s)	400, 510, 1094, 1377, 1422, 1507, 2406
TseFI	GTSAC	8 cut(s)	18, 421, 938, 1459, 1925, 2072, 2097, 2687
TseI	GCWGC	4 cut(s)	956, 1301, 1642, 1829
Tsp45I	GTSAC	8 cut(s)	18, 421, 938, 1459, 1925, 2072, 2097, 2687
TspDTI	ATGAA	8 cut(s)	61, 93, 555, 732, 1136, 1164, 1484, 2517
TspGWI	ACGGA	2 cut(s)	1336, 2342
TspRI	CASTG	7 cut(s)	400, 510, 1094, 1377, 1422, 1507, 2406
Tth111I	GACNNNGTC	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	731
VpaK11BI	GGWCC	6 cut(s)	119, 275, 389, 1529, 1558, 2043
VspI	ATTAAT	1 cut(s)	434
XagI	CCTNNNNNAGG	2 cut(s)	354, 1864
XapI	RAATTY	5 cut(s)	910, 1490, 2059, 2167, 2358
XbaI	TCTAGA	1 cut(s)	905
XceI	RCATGY	5 cut(s)	996, 1301, 1443, 2485, 2607
XcmI	CCANNNNNNNNNTGG	3 cut(s)	199, 614, 1190
XhoI	CTCGAG	1 cut(s)	266
XmiI	GTMKAC	3 cut(s)	1063, 1318, 2713
XspI	CTAG	4 cut(s)	485, 767, 906, 1335
ZrmI	AGTACT	1 cut(s)	919
Zsp2I	ATGCAT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.