Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003038

Physical Location & Seq

Genomic Coordinates Forward (+)

33048638 .. 33054307

Gene Structure 5670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGGAAGATGGTGTTTCATCACCAGCTACCATGCTGGGAGCTCCAACTGATTCCGCAATGGATTTAGACTTCATGGATGAATTGTTCTTAGATGGATGCTGGTTGGAAACAATAGATGGAGCTGGATTTCCTAATCAGAGTCCCCTCAGTTCTGGTGCCATTTTGGACTCCTCGTTTTTCTGGCCTACTTTGGGGACCAATGGAAATTTCAGCACGAACCCATTTCAGACCAGTAATCAAGAAGAGACACATACACCACTGTTCAATGAACTCCAGGAAGAAGCTCCAGCCAACATGCAGTCTCCTAGCCAGAATATGACAGATGTTGTCAGGTACTCTGGTCAATCAGGAAATCATATTATTGAAGGTCATGATTTCAGTAGAGGTATCTGGATTGGTCCCATAGAGAATCAAGTTTCTGCACCGTCTGTGATGGAGAGATTAAAGAGGGCACTTGTGTACATGAAAGATGTCATGAGAGACAAAAATGTTCTTGTACAGGTATGGCTGCCTGTAAATAGAGGGGGTAGACGTGTTTTAACAACTAATGATCTACTTTCCTCACTTGATTCTAGCTGTCCAAGGCTTGCCAAGTATCACGACATCTCTGTGAATTATCAGTTCTCAACTGGAGAAGATTCTAAGGAGTTTGTCAAGGGGTTGCCTGGTCGTGTTTTTTCAGGTAAGGTTCCTGAGTGGACTCCTGATGTTCGATTATTTAGAAGTGACGAGTACCCACGGGTTGATGATGCTCAACGGTATGATGTACGAGGAACTCTTGCCCTTCCGATCTTTGAACAAGGTAGTAGAACTTGCTTGGGTGTAATTGAGGTTGTTATGACCACCCAGAAGATGCAGTATCAACCTGAGCTTGAAAGTGTTTGCAAGGCACTCGAGGCTGTTGATCTTCAGAGTTCAAAAAATTTGAATACTCATAATTTAAAGGCGAGTGACAAGCCCTACAAAGCTGCATTACCTGAGATCCGAGAGGTCTTGAGATCTGCATGTGAGACGCACAACTTGCCCTTGGCACAAACTTGGGTGTTATGCATCCAACAAGGCAAAGATGGATGCCGACATTCTGATGACAACTACGTTCACTGTGTTTCAACCGTGGATGATGCTTGCCATGTGACTTATCCTTATATCAAGGGTTTTCATGAAGCTTGCTCTGAGCATCACTTGTTAAAAGGCCAAGGCATCGTTGGGAGAGCTTTTATGACTAATCAACCATGCTTCTCAAATGATATAACTTCCTTAGCCAAAACAGAGTATCCTTTATCTCACCATGCCAGGATGTTTGGATTGCATGCCGCGGTTGCAATACGTCTACGGAGCATCCACACTGGTTCAACTGATTTTGTCCTGGAGTTCTTCTTGCCAGTGGATTGCAGGGATCCTGAACAACACAAGAAGATGCTAACTTCACTGTCTTTCATCATACAAAATATCTGCCGGAGCTTACGGGTTGTCACAGACAAGGAATTAAAGGAAGAAACAGATTTGCCAGTCAGTGAAGTGATAGTCCCTTCAGATCCCAGGCCTAGTGGTATTTCCTCTTTTGCAGAGGTGCAACAGACTGATAATGATGTCTCAATATTCCCAAAGGAAAAGGCAAGGAAGATGCCGAGTGCGAAATCCTCAAAGTTGAGGCCACAAGACTTGAACAAAAAAGAAGGTGTTGACTGTGTTGGAGAGTTTTCTACATTCGGTGAGGGTAGCTTCTCAAGTGTTGGTGCGAGTAAGACCGGAGAGAAAAGGCGTACCAAGGCGGAGAAAGCTATCACCTTGGAAGTTCTTCGAAAATATTTTTCTGGCAGCCTGAAAGATGCTGCAAAGAGTCTTGGAGTTTGCTCCACAACCTTGAAAAGGATATGCCGACAACATGGGATTAAACGTTGGCCATCTCGAAAAATCAAGAAGGTTGGTCACTCCTTAGAGAAACTCCAACGTGTAATTGATTCAGTCCAAGGTGCGTCCAGTGCTTTCCAAATCAATTCTTTCTATACAAGCTATCCAGAGTTAGCCTCTCCAAATTTGTCTGGGACCAGCCCATTTTCAACTTCAAAGCTGATTGATCGGCCAAGGCCATCAGACGTGCCACCTGAAGGTGGTGTTTTGAGTCCCCAAGCTACTGCATCAAAATCTCCGTCGTCCTCATGTAGTCAGTGTTCCAGTTCAAGCCAGTGCTGTTCCAGCAAGACAGAGCAGCATCTTCCCACATGGAGCATCGCAGATAATGACGATCCAATTGCTGGAGATAATAGAGTGCTGAAGAGGGTCAGAAGTGAAGCAGAGTTGAATGACCTTCGTCAAGGTGGAGTGGATGAGCTAATGCAAAGATCCCAGAGCCATAAATATCTCAGTGAGCAACAAAACTTGCAGTCTTTTCGACCTCCACTGAAATATGATGGCCAGATAGCTGAAGAAAGGGATGCTCGAAGAGTAAAAGTCGCATATGGGGATGAGAAAACTCGATTTCGCATTCAAAATAACTGGAGATATGAAGATTTGGGGCAAGAAATTGCAAAGCGATTTGGTATAGAGGACATGAGTAGATTTGATATGAAGTACTTGGACGATGATTCAGAGTGGATCTTGTTAACATGTGATGCAGATTTAGATGAGTGCCTTGATGTATGTCGCTCTTCACGATGCAGTACAATTAAGCTCTCCCTCCAGCTTTCTCGTCGTCATTTAGAAAGGTTCTCAGGTAGCAGTGGCCCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

910

Amino Acids

101.64

Weight (kDa)

6.23

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	317 - 489	1.7e-83	NLP protein GAF domain
RWP-RK	PF02042	595 - 642	1.4e-23	RWP-RK domain
PB1	PF00564	814 - 894	1.4e-19	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20640 AT1G20640 AT1G20640 AT1G76350 AT1G76350 AT1G76350 AT1G76350
fragaria_vesca	FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270
malus_domestica	MD06G1009200.v1.1 MD16G1285500.v1.1
prunus_persica	Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1
pyrus_communis	pycom06g00770 pycom16g25880
rosa_chinensis	RchiOBHm_Chr7g0215411
rosa_laevigata	RLG00000002660 RLG00000002663
rosa_multiflora	Rmu_co8448299.1_g000001 Rmu_sc0000355.1_g000001 Rmu_sc0005928.1_g000011
rosa_roxburghii	Rroxscaffold_3G00244210
rosa_rugosa	Rorug07G0153300 Rorug07G0153400
rosa_samantha	Rh7AG289800 Rh7BG281700 Rh7CG309400 Rh7DG293400
rosa_wichuraiana	Rw7G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	2255
AccI	GTMKAC	2 cut(s)	529, 1330
AccII	CGCG	1 cut(s)	1316
AciI	CCGC	4 cut(s)	54, 1314, 1316, 1772
AclI	AACGTT	1 cut(s)	1897
AclWI	GGATC	7 cut(s)	976, 1391, 1404, 1529, 2240, 2337, 2603
AcoI	YGGCCR	3 cut(s)	1901, 2081, 2413
AcsI	RAATTY	3 cut(s)	205, 922, 2035
AcuI	CTGAAG	5 cut(s)	893, 1515, 2127, 2294, 2445
AfaI	GTAC	8 cut(s)	335, 461, 498, 734, 768, 1765, 2573, 2662
AfiI	CCNNNNNNNGG	5 cut(s)	191, 1869, 2108, 2111, 2255
AflIII	ACRYGT	3 cut(s)	532, 1951, 2606
AjiI	CACGTC	2 cut(s)	533, 2098
AjnI	CCWGG	5 cut(s)	273, 664, 1292, 1365, 1538
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	5 cut(s)	239, 306, 474, 1004, 1597
AlwI	GGATC	7 cut(s)	976, 1391, 1404, 1529, 2240, 2337, 2603
Ama87I	CYCGRG	1 cut(s)	893
AoxI	GGCC	9 cut(s)	182, 1192, 1541, 1652, 1901, 2081, 2087, 2413, 2722
ApeKI	GCWGC	5 cut(s)	508, 968, 1818, 1832, 2209
ApoI	RAATTY	3 cut(s)	205, 922, 2035
ArsI	GACNNNNNNTTYG	2 cut(s)	2135, 2167
Asp700I	GAANNNNTTC	1 cut(s)	1797
AspS9I	GGNCC	4 cut(s)	195, 398, 2046, 2723
AsuHPI	GGTGA	4 cut(s)	12, 1277, 1724, 1777
AsuII	TTCGAA	1 cut(s)	1801
AvaI	CYCGRG	1 cut(s)	893
AvaII	GGWCC	3 cut(s)	195, 398, 2046
BaeGI	GKGCMC	1 cut(s)	454
BaeI	ACNNNNGTAYC	2 cut(s)	325, 358
BalI	TGGCCA	2 cut(s)	1903, 2415
BamHI	GGATCC	1 cut(s)	1396
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	5 cut(s)	495, 955, 1819, 1830, 2221
BccI	CCATC	8 cut(s)	2, 86, 110, 427, 1061, 1912, 2098, 2405
BcgI	CGANNNNNNTGC	6 cut(s)	874, 908, 2234, 2268, 2372, 2406
BciT130I	CCWGG	5 cut(s)	275, 666, 1294, 1367, 1540
BciVI	GTATCC	1 cut(s)	1284
BcoDI	GTCTC	5 cut(s)	239, 306, 474, 1004, 1597
BfaI	CTAG	3 cut(s)	306, 573, 1545
BfuI	GTATCC	1 cut(s)	1284
BglII	AGATCT	1 cut(s)	998
BisI	GCNGC	6 cut(s)	509, 969, 1314, 1819, 1833, 2210
BlsI	GCNGC	6 cut(s)	510, 970, 1315, 1820, 1834, 2211
BmcAI	AGTACT	1 cut(s)	2573
Bme1390I	CCNGG	5 cut(s)	275, 666, 1294, 1367, 1540
Bme18I	GGWCC	3 cut(s)	195, 398, 2046
BmeT110I	CYCGRG	1 cut(s)	893
BmgBI	CACGTC	2 cut(s)	533, 2098
BmgT120I	GGNCC	4 cut(s)	195, 398, 2046, 2723
BmiI	GGNNCC	6 cut(s)	157, 196, 400, 690, 1398, 2047
BmrFI	CCNGG	5 cut(s)	275, 666, 1294, 1367, 1540
BoxI	GACNNNNGTC	1 cut(s)	2310
BplI	GAGNNNNNCTC	2 cut(s)	2012, 2044
BpmI	CTGGAG	7 cut(s)	257, 270, 651, 1388, 2277, 2518, 2663
Bpu10I	CCTNAGC	2 cut(s)	867, 1258
Bpu14I	TTCGAA	1 cut(s)	1801
BpuEI	CTTGAG	2 cut(s)	1015, 1711
BsaWI	WCCGGW	1 cut(s)	1748
Bsc4I	CCNNNNNNNGG	5 cut(s)	191, 1869, 2108, 2111, 2255
Bse1I	ACTGG	9 cut(s)	231, 634, 1351, 1382, 1508, 1980, 2175, 2185, 2501
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	5 cut(s)	275, 666, 1294, 1367, 1540
BseLI	CCNNNNNNNGG	5 cut(s)	191, 1869, 2108, 2111, 2255
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	7 cut(s)	160, 684, 858, 969, 1164, 2377, 2724
BseNI	ACTGG	9 cut(s)	231, 634, 1351, 1382, 1508, 1980, 2175, 2185, 2501
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	5 cut(s)	495, 955, 1819, 1830, 2221
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	1316
BshFI	GGCC	9 cut(s)	184, 1194, 1543, 1654, 1903, 2083, 2089, 2415, 2724
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	2 cut(s)	1456, 1749
BslFI	GGGAC	6 cut(s)	126, 208, 384, 1511, 2059, 2109
BslI	CCNNNNNNNGG	5 cut(s)	191, 1869, 2108, 2111, 2255
BsmAI	GTCTC	5 cut(s)	239, 306, 474, 1004, 1597
BsmBI	CGTCTC	1 cut(s)	1004
BsmFI	GGGAC	6 cut(s)	126, 208, 384, 1511, 2059, 2109
BsmI	GAATGC	1 cut(s)	2484
BsnI	GGCC	9 cut(s)	184, 1194, 1543, 1654, 1903, 2083, 2089, 2415, 2724
BsoBI	CYCGRG	1 cut(s)	893
Bsp119I	TTCGAA	1 cut(s)	1801
Bsp1286I	GDGCHC	2 cut(s)	43, 454
Bsp1407I	TGTACA	2 cut(s)	459, 496
BspACI	CCGC	4 cut(s)	54, 1314, 1316, 1772
BspANI	GGCC	9 cut(s)	184, 1194, 1543, 1654, 1903, 2083, 2089, 2415, 2724
BspCNI	CTCAG	7 cut(s)	159, 685, 859, 970, 1165, 2376, 2723
BspFNI	CGCG	1 cut(s)	1316
BspHI	TCATGA	4 cut(s)	370, 474, 1159, 2729
BspLI	GGNNCC	6 cut(s)	157, 196, 400, 690, 1398, 2047
BspPI	GGATC	7 cut(s)	976, 1391, 1404, 1529, 2240, 2337, 2603
BspQI	GCTCTTC	1 cut(s)	2653
BspT104I	TTCGAA	1 cut(s)	1801
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	63
BsrGI	TGTACA	2 cut(s)	459, 496
BsrI	ACTGG	9 cut(s)	231, 634, 1351, 1382, 1508, 1980, 2175, 2185, 2501
BssT1I	CCWWGG	7 cut(s)	581, 1026, 1195, 1767, 1788, 1969, 2084
Bst2UI	CCWGG	5 cut(s)	275, 666, 1294, 1367, 1540
Bst4CI	ACNGT	7 cut(s)	261, 426, 759, 1103, 1114, 1431, 1688
Bst6I	CTCTTC	4 cut(s)	237, 2270, 2437, 2653
BstAPI	GCANNNNNTGC	1 cut(s)	1021
BstAUI	TGTACA	2 cut(s)	459, 496
BstBI	TTCGAA	1 cut(s)	1801
BstC8I	GCNNGC	4 cut(s)	588, 1126, 1168, 1311
BstDSI	CCRYGG	3 cut(s)	737, 1113, 1314
BstENI	CCTNNNNNAGG	1 cut(s)	1867
BstFNI	CGCG	1 cut(s)	1316
BstMAI	GTCTC	5 cut(s)	239, 306, 474, 1004, 1597
BstMWI	GCNNNNNNNGC	6 cut(s)	896, 1021, 1319, 1778, 1982, 2196
BstNI	CCWGG	5 cut(s)	275, 666, 1294, 1367, 1540
BstNSI	RCATGY	4 cut(s)	298, 1008, 1313, 2610
BstPAI	GACNNNNGTC	1 cut(s)	2310
BstSCI	CCNGG	5 cut(s)	273, 664, 1292, 1365, 1538
BstSLI	GKGCMC	1 cut(s)	454
BstUI	CGCG	1 cut(s)	1316
BstV1I	GCAGC	5 cut(s)	495, 955, 1819, 1830, 2221
BstX2I	RGATCY	6 cut(s)	981, 998, 1396, 1534, 2342, 2595
BstYI	RGATCY	6 cut(s)	981, 998, 1396, 1534, 2342, 2595
BsuI	GTATCC	1 cut(s)	1284
BsuRI	GGCC	9 cut(s)	184, 1194, 1543, 1654, 1903, 2083, 2089, 2415, 2724
BtgI	CCRYGG	3 cut(s)	737, 1113, 1314
BtgZI	GCGATG	1 cut(s)	2215
BtrI	CACGTC	2 cut(s)	533, 2098
BtsI	GCAGTG	1 cut(s)	2725
Cac8I	GCNNGC	4 cut(s)	588, 1126, 1168, 1311
CciI	TCATGA	4 cut(s)	370, 474, 1159, 2729
Cfr13I	GGNCC	4 cut(s)	195, 398, 2046, 2723
Cfr42I	CCGCGG	1 cut(s)	1317
CseI	GACGC	2 cut(s)	1021, 1965
Csp6I	GTAC	8 cut(s)	334, 460, 497, 733, 767, 1764, 2572, 2661
CspCI	CAANNNNNGTGG	2 cut(s)	1644, 1679
CviQI	GTAC	8 cut(s)	334, 460, 497, 733, 767, 1764, 2572, 2661
DraI	TTTAAA	1 cut(s)	942
EaeI	YGGCCR	3 cut(s)	1901, 2081, 2413
Eam1104I	CTCTTC	4 cut(s)	237, 2270, 2437, 2653
EarI	CTCTTC	4 cut(s)	237, 2270, 2437, 2653
EciI	GGCGGA	1 cut(s)	1787
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	7 cut(s)	581, 1026, 1195, 1767, 1788, 1969, 2084
Eco147I	AGGCCT	1 cut(s)	1543
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	3 cut(s)	195, 398, 2046
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	5 cut(s)	893, 1515, 2127, 2294, 2445
Eco88I	CYCGRG	1 cut(s)	893
EcoICRI	GAGCTC	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	1867
EcoRII	CCWGG	5 cut(s)	273, 664, 1292, 1365, 1538
EcoT14I	CCWWGG	7 cut(s)	581, 1026, 1195, 1767, 1788, 1969, 2084
EcoT22I	ATGCAT	1 cut(s)	1052
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	7 cut(s)	581, 1026, 1195, 1767, 1788, 1969, 2084
Esp3I	CGTCTC	1 cut(s)	1004
FaqI	GGGAC	6 cut(s)	126, 208, 384, 1511, 2059, 2109
FauNDI	CATATG	1 cut(s)	2458
FblI	GTMKAC	2 cut(s)	529, 1330
Fnu4HI	GCNGC	6 cut(s)	509, 969, 1314, 1819, 1833, 2210
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	6 cut(s)	509, 969, 1314, 1819, 1833, 2210
FspBI	CTAG	3 cut(s)	306, 573, 1545
GluI	GCNGC	6 cut(s)	509, 969, 1314, 1819, 1833, 2210
GsaI	CCCAGC	1 cut(s)	38
GsuI	CTGGAG	7 cut(s)	257, 270, 651, 1388, 2277, 2518, 2663
HaeIII	GGCC	9 cut(s)	184, 1194, 1543, 1654, 1903, 2083, 2089, 2415, 2724
HapII	CCGG	2 cut(s)	1456, 1749
HgaI	GACGC	2 cut(s)	1021, 1965
HincII	GTYRAC	2 cut(s)	1684, 2604
HindII	GTYRAC	2 cut(s)	1684, 2604
HindIII	AAGCTT	1 cut(s)	1164
HpaI	GTTAAC	1 cut(s)	2604
HpaII	CCGG	2 cut(s)	1456, 1749
HphI	GGTGA	4 cut(s)	12, 1277, 1724, 1777
Hpy166II	GTNNAC	7 cut(s)	460, 530, 699, 1099, 1331, 1684, 2604
Hpy8I	GTNNAC	7 cut(s)	460, 530, 699, 1099, 1331, 1684, 2604
Hpy99I	CGWCG	2 cut(s)	2155, 2694
HpyAV	CCTTC	7 cut(s)	359, 794, 1539, 1670, 1915, 2102, 2318
HpyCH4III	ACNGT	7 cut(s)	261, 426, 759, 1103, 1114, 1431, 1688
HpyCH4IV	ACGT	6 cut(s)	532, 1095, 1327, 1897, 1951, 2097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	896, 1021, 1319, 1778, 1982, 2196
HpySE526I	ACGT	6 cut(s)	532, 1095, 1327, 1897, 1951, 2097
KspAI	GTTAAC	1 cut(s)	2604
KspI	CCGCGG	1 cut(s)	1317
LguI	GCTCTTC	1 cut(s)	2653
LmnI	GCTCC	8 cut(s)	38, 46, 119, 289, 1335, 1458, 1859, 2226
Lsp1109I	GCAGC	5 cut(s)	495, 955, 1819, 1830, 2221
MaeI	CTAG	3 cut(s)	306, 573, 1545
MaeII	ACGT	6 cut(s)	532, 1095, 1327, 1897, 1951, 2097
MaeIII	GTNAC	5 cut(s)	725, 950, 1132, 1471, 1928
MfeI	CAATTG	1 cut(s)	2250
MflI	RGATCY	6 cut(s)	981, 998, 1396, 1534, 2342, 2595
MhlI	GDGCHC	2 cut(s)	43, 454
MlsI	TGGCCA	2 cut(s)	1903, 2415
MluNI	TGGCCA	2 cut(s)	1903, 2415
MlyI	GAGTC	5 cut(s)	148, 161, 694, 1849, 2131
MmeI	TCCRAC	5 cut(s)	68, 84, 1078, 1672, 1972
Mox20I	TGGCCA	2 cut(s)	1903, 2415
Mph1103I	ATGCAT	1 cut(s)	1052
MroXI	GAANNNNTTC	1 cut(s)	1797
MscI	TGGCCA	2 cut(s)	1903, 2415
MseI	TTAA	8 cut(s)	443, 539, 941, 1187, 1487, 1893, 2603, 2667
MslI	CAYNNNNRTG	2 cut(s)	608, 1083
Msp20I	TGGCCA	2 cut(s)	1903, 2415
MspA1I	CMGCKG	1 cut(s)	1316
MspI	CCGG	2 cut(s)	1456, 1749
MspR9I	CCNGG	5 cut(s)	275, 666, 1294, 1367, 1540
MunI	CAATTG	1 cut(s)	2250
Mva1269I	GAATGC	1 cut(s)	2484
MvaI	CCWGG	5 cut(s)	275, 666, 1294, 1367, 1540
MvnI	CGCG	1 cut(s)	1316
MwoI	GCNNNNNNNGC	6 cut(s)	896, 1021, 1319, 1778, 1982, 2196
NdeI	CATATG	1 cut(s)	2458
NlaIV	GGNNCC	6 cut(s)	157, 196, 400, 690, 1398, 2047
NmeAIII	GCCGAG	1 cut(s)	1653
NmuCI	GTSAC	5 cut(s)	725, 950, 1132, 1471, 1928
NsiI	ATGCAT	1 cut(s)	1052
NspI	RCATGY	4 cut(s)	298, 1008, 1313, 2610
NspV	TTCGAA	1 cut(s)	1801
PaeI	GCATGC	1 cut(s)	1313
PaeR7I	CTCGAG	1 cut(s)	893
PagI	TCATGA	4 cut(s)	370, 474, 1159, 2729
PceI	AGGCCT	1 cut(s)	1543
PciI	ACATGT	1 cut(s)	2606
PciSI	GCTCTTC	1 cut(s)	2653
PcsI	WCGNNNNNNNCGW	1 cut(s)	2650
PctI	GAATGC	1 cut(s)	2484
PdmI	GAANNNNTTC	1 cut(s)	1797
PfeI	GAWTC	6 cut(s)	50, 409, 569, 638, 1961, 2585
PflMI	CCANNNNNTGG	1 cut(s)	2255
PfoI	TCCNGGA	2 cut(s)	273, 1365
PkrI	GCNGC	6 cut(s)	510, 970, 1315, 1820, 1834, 2211
PleI	GAGTC	5 cut(s)	147, 161, 694, 1848, 2130
PpsI	GAGTC	5 cut(s)	147, 161, 694, 1848, 2130
PscI	ACATGT	1 cut(s)	2606
PshAI	GACNNNNGTC	1 cut(s)	2310
Psp124BI	GAGCTC	1 cut(s)	43
Psp1406I	AACGTT	1 cut(s)	1897
Psp6I	CCWGG	5 cut(s)	273, 664, 1292, 1365, 1538
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	5 cut(s)	273, 664, 1292, 1365, 1538
PspN4I	GGNNCC	6 cut(s)	157, 196, 400, 690, 1398, 2047
PspPI	GGNCC	4 cut(s)	195, 398, 2046, 2723
PspXI	VCTCGAGB	1 cut(s)	893
PsrI	GAACNNNNNNTAC	2 cut(s)	2155, 2187
PsuI	RGATCY	6 cut(s)	981, 998, 1396, 1534, 2342, 2595
RsaI	GTAC	8 cut(s)	335, 461, 498, 734, 768, 1765, 2573, 2662
RsaNI	GTAC	8 cut(s)	334, 460, 497, 733, 767, 1764, 2572, 2661
RseI	CAYNNNNRTG	2 cut(s)	608, 1083
SacI	GAGCTC	1 cut(s)	43
SacII	CCGCGG	1 cut(s)	1317
SapI	GCTCTTC	1 cut(s)	2653
SaqAI	TTAA	8 cut(s)	443, 539, 941, 1187, 1487, 1893, 2603, 2667
SatI	GCNGC	6 cut(s)	509, 969, 1314, 1819, 1833, 2210
Sau96I	GGNCC	4 cut(s)	195, 398, 2046, 2723
ScaI	AGTACT	1 cut(s)	2573
SchI	GAGTC	5 cut(s)	148, 161, 694, 1849, 2131
ScrFI	CCNGG	5 cut(s)	275, 666, 1294, 1367, 1540
SduI	GDGCHC	2 cut(s)	43, 454
Sfr274I	CTCGAG	1 cut(s)	893
Sfr303I	CCGCGG	1 cut(s)	1317
SfuI	TTCGAA	1 cut(s)	1801
SgrBI	CCGCGG	1 cut(s)	1317
SinI	GGWCC	3 cut(s)	195, 398, 2046
SlaI	CTCGAG	1 cut(s)	893
SmiMI	CAYNNNNRTG	2 cut(s)	608, 1083
SmlI	CTYRAG	3 cut(s)	893, 994, 1726
SmoI	CTYRAG	3 cut(s)	893, 994, 1726
SphI	GCATGC	1 cut(s)	1313
SseBI	AGGCCT	1 cut(s)	1543
SsiI	CCGC	4 cut(s)	54, 1314, 1316, 1772
SspI	AATATT	2 cut(s)	1599, 1808
SspMI	CTAG	3 cut(s)	306, 573, 1545
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	1543
StyD4I	CCNGG	5 cut(s)	273, 664, 1292, 1365, 1538
StyI	CCWWGG	7 cut(s)	581, 1026, 1195, 1767, 1788, 1969, 2084
TaaI	ACNGT	7 cut(s)	261, 426, 759, 1103, 1114, 1431, 1688
TaiI	ACGT	6 cut(s)	535, 1098, 1330, 1900, 1954, 2100
TaqI	TCGA	7 cut(s)	712, 894, 1801, 1909, 2392, 2440, 2476
TatI	WGTACW	4 cut(s)	459, 496, 2571, 2660
TauI	GCSGC	1 cut(s)	1316
TfiI	GAWTC	6 cut(s)	50, 409, 569, 638, 1961, 2585
Tru1I	TTAA	8 cut(s)	443, 539, 941, 1187, 1487, 1893, 2603, 2667
Tru9I	TTAA	8 cut(s)	443, 539, 941, 1187, 1487, 1893, 2603, 2667
TseFI	GTSAC	5 cut(s)	725, 950, 1132, 1471, 1928
TseI	GCWGC	5 cut(s)	508, 968, 1818, 1832, 2209
Tsp45I	GTSAC	5 cut(s)	725, 950, 1132, 1471, 1928
TspGWI	ACGGA	2 cut(s)	1348, 2139
Van91I	CCANNNNNTGG	1 cut(s)	2255
VpaK11BI	GGWCC	3 cut(s)	195, 398, 2046
XagI	CCTNNNNNAGG	1 cut(s)	1867
XapI	RAATTY	3 cut(s)	205, 922, 2035
XceI	RCATGY	4 cut(s)	298, 1008, 1313, 2610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1202
XhoI	CTCGAG	1 cut(s)	893
XmiI	GTMKAC	2 cut(s)	529, 1330
XmnI	GAANNNNTTC	1 cut(s)	1797
XspI	CTAG	3 cut(s)	306, 573, 1545
ZrmI	AGTACT	1 cut(s)	2573
Zsp2I	ATGCAT	1 cut(s)	1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.