Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8448299.1

Orthogroup ID

OG0003038

Physical Location & Seq

Genomic Coordinates Reverse (-)

178 .. 1258

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8448299.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggacaagccttttgatttgcaggctgttgatcttcggagttcaaaaaatttgaatactcataatttaaaggcgagtgacaagccctacaaagctgcattacctgagatccgagaggtcttgagatctgcatgtgagacgcacaacttgcccttggcacaaacttgggtgttatgcatccaacaaggcaaagatggatgccgacattctgatgacaactacgttcactgtgtttcaactgtggatgatgcttgccatgtgacttatccttatatcaagggttttcatgaagcttgctctgagcatcacttgttaaaaggccaaggcatcgttgggagagcttttatgactaatcaaccatgcttctcaaatgatataacttccttagccaaaacagagtatcctttatctcaccatgccaggttgtttggattgcatgcagcggttgcaatacgtctacggagcatccacactggttcaactgattttgtcctggagttcttcttgccagtggattgcagggatcctgaacaacacaagaagatgctaacttcactgtctttaatcatacaaaatatctgccggagcttacgggttgtcacagacaaggaattaaaggaagaaacagatttgccagtcagtgaagtgatagtcccttcagatcccaggcctagtggtatttcctcttttgcagaggtgcaacagactgataatgatgtctcaatattcccaaaggaaaaggcaaggaagatgccgagtgcgaaatcctcaaagttgaggccacaagacttgaacaaaaaagaaggtgttgactgtgttggagagttttctacattcggtgagggtagcttctcaagtgttggtgcgagtaagaccggagagaaaaggcgtaccaaggcggagaaagctatcaccttggaagttcttcgaaaatatttttctggcagtctgaaagatgctgcaaagagtcttggaggtatgcatttgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

330

Amino Acids

36.69

Weight (kDa)

8.26

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20640 AT1G20640 AT1G20640 AT1G76350 AT1G76350 AT1G76350 AT1G76350
fragaria_vesca	FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270
malus_domestica	MD06G1009200.v1.1 MD16G1285500.v1.1
prunus_persica	Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1
pyrus_communis	pycom06g00770 pycom16g25880
rosa_chinensis	RchiOBHm_Chr7g0215411
rosa_laevigata	RLG00000002660 RLG00000002663
rosa_multiflora	Rmu_co8448299.1_g000001 Rmu_sc0000355.1_g000001 Rmu_sc0005928.1_g000011
rosa_roxburghii	Rroxscaffold_3G00244210
rosa_rugosa	Rorug07G0153300 Rorug07G0153400
rosa_samantha	Rh7AG289800 Rh7BG281700 Rh7CG309400 Rh7DG293400
rosa_wichuraiana	Rw7G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	457
AciI	CCGC	2 cut(s)	443, 899
AclWI	GGATC	4 cut(s)	103, 518, 531, 656
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	1 cut(s)	892
AgsI	TTSAA	5 cut(s)	45, 55, 237, 480, 793
AjnI	CCWGG	3 cut(s)	419, 492, 665
AluBI	AGCT	6 cut(s)	95, 293, 341, 588, 849, 908
AluI	AGCT	6 cut(s)	95, 293, 341, 588, 849, 908
Alw26I	GTCTC	2 cut(s)	131, 724
AlwI	GGATC	4 cut(s)	103, 518, 531, 656
AoxI	GGCC	3 cut(s)	319, 668, 779
ApeKI	GCWGC	3 cut(s)	95, 440, 959
ApoI	RAATTY	1 cut(s)	49
ArsI	GACNNNNNNTTYG	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	924
AsuHPI	GGTGA	3 cut(s)	404, 851, 904
AsuII	TTCGAA	1 cut(s)	928
BamHI	GGATCC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	82, 452, 946
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	3 cut(s)	421, 494, 667
BciVI	GTATCC	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	131, 724
BfaI	CTAG	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	3 cut(s)	96, 441, 960
BlsI	GCNGC	3 cut(s)	97, 442, 961
Bme1390I	CCNGG	3 cut(s)	421, 494, 667
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	3 cut(s)	421, 494, 667
BmsI	GCATC	9 cut(s)	186, 188, 238, 313, 336, 474, 534, 741, 946
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	385
Bpu14I	TTCGAA	1 cut(s)	928
BpuEI	CTTGAG	2 cut(s)	142, 838
BsaJI	CCNNGG	5 cut(s)	153, 322, 665, 894, 915
BsaWI	WCCGGW	1 cut(s)	875
Bse1I	ACTGG	3 cut(s)	478, 509, 635
BseBI	CCWGG	3 cut(s)	421, 494, 667
BseDI	CCNNGG	5 cut(s)	153, 322, 665, 894, 915
BseGI	GGATG	4 cut(s)	177, 203, 250, 465
BseMII	CTCAG	2 cut(s)	96, 291
BseNI	ACTGG	3 cut(s)	478, 509, 635
BseXI	GCAGC	3 cut(s)	82, 452, 946
BshFI	GGCC	3 cut(s)	321, 670, 781
BsiSI	CCGG	2 cut(s)	583, 876
BslFI	GGGAC	1 cut(s)	638
BsmAI	GTCTC	2 cut(s)	131, 724
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	3 cut(s)	321, 670, 781
Bsp119I	TTCGAA	1 cut(s)	928
Bsp143I	GATC	5 cut(s)	31, 108, 125, 523, 661
BspACI	CCGC	2 cut(s)	443, 899
BspANI	GGCC	3 cut(s)	321, 670, 781
BspCNI	CTCAG	2 cut(s)	97, 292
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	4 cut(s)	103, 518, 531, 656
BspT104I	TTCGAA	1 cut(s)	928
BsrI	ACTGG	3 cut(s)	478, 509, 635
BssECI	CCNNGG	5 cut(s)	153, 322, 665, 894, 915
BssMI	GATC	5 cut(s)	31, 108, 125, 523, 661
BssT1I	CCWWGG	4 cut(s)	153, 322, 894, 915
Bst2UI	CCWGG	3 cut(s)	421, 494, 667
Bst4CI	ACNGT	4 cut(s)	230, 241, 558, 815
BstAPI	GCANNNNNTGC	2 cut(s)	148, 446
BstBI	TTCGAA	1 cut(s)	928
BstC8I	GCNNGC	4 cut(s)	24, 253, 295, 438
BstDEI	CTNAG	3 cut(s)	105, 300, 385
BstF5I	GGATG	4 cut(s)	177, 203, 250, 465
BstKTI	GATC	5 cut(s)	34, 111, 128, 526, 664
BstMAI	GTCTC	2 cut(s)	131, 724
BstMBI	GATC	5 cut(s)	31, 108, 125, 523, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 446, 905
BstNI	CCWGG	3 cut(s)	421, 494, 667
BstNSI	RCATGY	2 cut(s)	135, 440
BstSCI	CCNGG	3 cut(s)	419, 492, 665
BstV1I	GCAGC	3 cut(s)	82, 452, 946
BstX2I	RGATCY	4 cut(s)	108, 125, 523, 661
BstYI	RGATCY	4 cut(s)	108, 125, 523, 661
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	3 cut(s)	321, 670, 781
BtsCI	GGATG	4 cut(s)	177, 203, 250, 465
BtsIMutI	CAGTG	5 cut(s)	226, 471, 516, 554, 646
Cac8I	GCNNGC	4 cut(s)	24, 253, 295, 438
CciI	TCATGA	1 cut(s)	286
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	891
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CviAII	CATG	6 cut(s)	132, 257, 287, 360, 416, 437
CviQI	GTAC	1 cut(s)	891
DdeI	CTNAG	3 cut(s)	105, 300, 385
DpnI	GATC	5 cut(s)	33, 110, 127, 525, 663
DpnII	GATC	5 cut(s)	31, 108, 125, 523, 661
DraI	TTTAAA	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	914
Eco130I	CCWWGG	4 cut(s)	153, 322, 894, 915
Eco147I	AGGCCT	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	642
EcoRII	CCWGG	3 cut(s)	419, 492, 665
EcoT14I	CCWWGG	4 cut(s)	153, 322, 894, 915
EcoT22I	ATGCAT	2 cut(s)	179, 984
ErhI	CCWWGG	4 cut(s)	153, 322, 894, 915
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	6 cut(s)	135, 260, 290, 363, 419, 440
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	6 cut(s)	131, 256, 286, 359, 415, 436
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	96, 441, 960
FokI	GGATG	4 cut(s)	164, 210, 257, 452
Fsp4HI	GCNGC	3 cut(s)	96, 441, 960
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	3 cut(s)	96, 441, 960
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	3 cut(s)	321, 670, 781
HapII	CCGG	2 cut(s)	583, 876
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	6 cut(s)	135, 260, 290, 363, 419, 440
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	1 cut(s)	967
HpaII	CCGG	2 cut(s)	583, 876
HphI	GGTGA	3 cut(s)	404, 851, 904
Hpy166II	GTNNAC	3 cut(s)	226, 458, 811
Hpy188I	TCNGA	6 cut(s)	39, 113, 211, 301, 661, 951
Hpy188III	TCNNGA	3 cut(s)	121, 287, 527
Hpy8I	GTNNAC	3 cut(s)	226, 458, 811
HpyAV	CCTTC	2 cut(s)	666, 797
HpyCH4III	ACNGT	4 cut(s)	230, 241, 558, 815
HpyCH4IV	ACGT	2 cut(s)	222, 454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 446, 905
HpyF3I	CTNAG	3 cut(s)	105, 300, 385
HpySE526I	ACGT	2 cut(s)	222, 454
Hsp92II	CATG	6 cut(s)	135, 260, 290, 363, 419, 440
Kzo9I	GATC	5 cut(s)	31, 108, 125, 523, 661
LmnI	GCTCC	2 cut(s)	462, 585
Lsp1109I	GCAGC	3 cut(s)	82, 452, 946
LweI	GCATC	9 cut(s)	186, 188, 238, 313, 336, 474, 534, 741, 946
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	2 cut(s)	222, 454
MaeIII	GTNAC	3 cut(s)	77, 259, 598
MalI	GATC	5 cut(s)	33, 110, 127, 525, 663
MboI	GATC	5 cut(s)	31, 108, 125, 523, 661
MboII	GAAGA	6 cut(s)	26, 493, 553, 632, 760, 917
MflI	RGATCY	4 cut(s)	108, 125, 523, 661
MluCI	AATT	3 cut(s)	49, 64, 611
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	2 cut(s)	205, 799
MnlI	CCTC	7 cut(s)	109, 688, 694, 771, 778, 835, 968
Mph1103I	ATGCAT	2 cut(s)	179, 984
MroXI	GAANNNNTTC	1 cut(s)	924
MseI	TTAA	4 cut(s)	68, 314, 563, 614
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	583, 876
MspR9I	CCNGG	3 cut(s)	421, 494, 667
MvaI	CCWGG	3 cut(s)	421, 494, 667
MwoI	GCNNNNNNNGC	3 cut(s)	148, 446, 905
NdeII	GATC	5 cut(s)	31, 108, 125, 523, 661
NlaIII	CATG	6 cut(s)	135, 260, 290, 363, 419, 440
NlaIV	GGNNCC	1 cut(s)	525
NmeAIII	GCCGAG	1 cut(s)	780
NmuCI	GTSAC	3 cut(s)	77, 259, 598
NsiI	ATGCAT	2 cut(s)	179, 984
NspI	RCATGY	2 cut(s)	135, 440
NspV	TTCGAA	1 cut(s)	928
PaeI	GCATGC	1 cut(s)	440
PagI	TCATGA	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	924
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	3 cut(s)	97, 442, 961
PleI	GAGTC	1 cut(s)	975
PpsI	GAGTC	1 cut(s)	975
Psp6I	CCWGG	3 cut(s)	419, 492, 665
PspGI	CCWGG	3 cut(s)	419, 492, 665
PspN4I	GGNNCC	1 cut(s)	525
PsuI	RGATCY	4 cut(s)	108, 125, 523, 661
RsaI	GTAC	1 cut(s)	892
RsaNI	GTAC	1 cut(s)	891
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	68, 314, 563, 614
SatI	GCNGC	3 cut(s)	96, 441, 960
Sau3AI	GATC	5 cut(s)	31, 108, 125, 523, 661
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	3 cut(s)	421, 494, 667
SfaNI	GCATC	9 cut(s)	186, 188, 238, 313, 336, 474, 534, 741, 946
SfuI	TTCGAA	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	121, 853
SmoI	CTYRAG	2 cut(s)	121, 853
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	3 cut(s)	49, 64, 611
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	2 cut(s)	443, 899
SspI	AATATT	2 cut(s)	726, 935
SspMI	CTAG	1 cut(s)	672
StuI	AGGCCT	1 cut(s)	670
StyD4I	CCNGG	3 cut(s)	419, 492, 665
StyI	CCWWGG	4 cut(s)	153, 322, 894, 915
TaaI	ACNGT	4 cut(s)	230, 241, 558, 815
TaiI	ACGT	2 cut(s)	225, 457
TaqI	TCGA	1 cut(s)	928
TasI	AATT	3 cut(s)	49, 64, 611
Tru1I	TTAA	4 cut(s)	68, 314, 563, 614
Tru9I	TTAA	4 cut(s)	68, 314, 563, 614
TscAI	CASTG	5 cut(s)	233, 478, 516, 561, 646
TseFI	GTSAC	3 cut(s)	77, 259, 598
TseI	GCWGC	3 cut(s)	95, 440, 959
Tsp45I	GTSAC	3 cut(s)	77, 259, 598
TspDTI	ATGAA	2 cut(s)	275, 303
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	5 cut(s)	233, 478, 516, 561, 646
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	2 cut(s)	135, 440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	1 cut(s)	672
Zsp2I	ATGCAT	2 cut(s)	179, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.