Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003038

Physical Location & Seq

Genomic Coordinates Forward (+)

1050052 .. 1052738

Gene Structure 2687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1009200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGAGTTTTGGAACCTACAGGTTGGGGGATAATCCGGAAAGTGAGGCTTCTGCAATGGATGATGGTGTTCTGTCACCAGCTACCATGTTGGGAGCTCAACCTGATTCTGCCACGGATTTAGATTTCATGGACGAACTCTTCTTGGAGGGATGCTGGTTGGAAACCACATATGGACCTGAGTTTCCTAATCAGAGCCTTCCCAGTACCGCTGCCCCCTTGAACCCCTCCTTTTTTTGGCATACGTTGGAGACCAATGGCAATATGGCCATGAACACGTCTCACAACAGTAATCAAGAGGAGATGCAACGACCATTCCTTAAACAACTTGTAGAAGGTCCTGTGAATCCTCAGTCTCCTAGAGAGGATATGATAAAAGATGCTGTGGCATACTCTGGTCAATCAGTGGATCCTACAATTGAAGGTCGTGAATTTAGCAGAAGGTGGTGGATTGGTCCCACTGGAAATGAAGGTTTTGCATCATCTGTGACGGAGAGATTAATGAGGGCTCTCGTGAACATTGGAGAGGTCATGAGAAACAAAGATGTTCTTGTACAAGTATGGGTGCCAGTGAACAGAGGGGGTAGACGTGTTTTAACAATGAATGAACTTTTCTATCTTGATTCTAGCTGTTCCAGGCTCGCTAAATATCGAGACATCTCTGCTAATTACCAGTTTGCAACTGGGGAGGATTCAACAGAAATGGTTATGGGGTTGCCTGGCCGGGTTTTCTCAGGTAAGATTCCTGAGTGGACTCCTGATGTTCGATACTTTAGACATGATGAATATCCACGGGTTGGCCATGCTCAACAGTATAATGTAAGTGGAACTCTAGCCCTTCCCATCTTTGAACAAGGTAGTAGGACTTGCTTGGGCGTTATTGAGGTTGTTACGACCGACCAGAAGATAAAATATCAATCTGACATTGACAGCGTTTGCAAGGCACTTGAGGCTGTTGATCTTCGAAGTTCTAGAAATTTGAGTACTCAAAATGTAAAGGGGTGTGACAAGCCCTTCCACGCTGCATTACCCGAGATCCAAGAGGTCTTGAGATCTGCATGTGAGACGCACAAATTGCCCTTGGCACAAACCTGGATGTCATGCATCCAACAAGGTAAAGATGGGTGCCGACATACTGACGACAACTACGTCCACTGTGTTTCAACTGTGGAGCATGCTTGTCACGTGGCTGATCCTTGTATCCAGAGTTTTCATGAAGCGTGCTCTGAGCATCACTTGCTAAGAGGCCAAGGCATCGTTGGGAGAGCTTTTATGACCAATCAGCCATGCTTCTCAGATGACATAACTTCCTTTGTCAAGACAGAGTATCCTCTATCTCACCATGCCAGGATGTTTGATTTGCATGCAGCTGTTGCAATACGTCTGCGGAGCATTGACACTGGTTCAACTGATTTTGTCCTGGAGTTCTTCTTGCCAGTGGAGTGCAGGGATCCTGAAGAACAGGAAAAGATGCTTACATCACTGTCCTTGGTTATGCAACAGACATGCCGGAGCTTACGGGTTGTCACAGACAAGGAAGTTGAGGAGGAAACTAATTTTCATGTCAGTGAGGTGATAGCTCGGTCAGATCCCGGACCAAGTAATATTGCTTGTTTCACAGAGGTCCAACAGAATGGTAAGGATGTCTCAATGTTCCCGAACCAAAAACCACGCAAGGTGCTGAGTGTGAAATTGTCGAAGTTAAGGCAGCATCAAGAAGATTCAAACCTAAAAGGTGGTGTTGAGTGTGGACAAGAGTTTTCTGCTCTAGGTGAGGGTAGCTTTTCAAGTGTTGGTGTGAGTAAGACAAGAGAGAAAAGACGTACCAAGGCAGAAAAAGATATCAACTTTGAAGTTCTTCGCAAATATTTTTCCGGTAGTCTAAAAGATGCTGCAAAGAGTATTGGAGGTAAGAATTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

641

Amino Acids

71.66

Weight (kDa)

5.49

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	183 - 298	5.1e-06	NLP protein GAF domain
GAF_NLP	PF22922	334 - 506	5.5e-84	NLP protein GAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20640 AT1G20640 AT1G20640 AT1G76350 AT1G76350 AT1G76350 AT1G76350
fragaria_vesca	FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270
malus_domestica	MD06G1009200.v1.1 MD16G1285500.v1.1
prunus_persica	Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1
pyrus_communis	pycom06g00770 pycom16g25880
rosa_chinensis	RchiOBHm_Chr7g0215411
rosa_laevigata	RLG00000002660 RLG00000002663
rosa_multiflora	Rmu_co8448299.1_g000001 Rmu_sc0000355.1_g000001 Rmu_sc0005928.1_g000011
rosa_roxburghii	Rroxscaffold_3G00244210
rosa_rugosa	Rorug07G0153300 Rorug07G0153400
rosa_samantha	Rh7AG289800 Rh7BG281700 Rh7CG309400 Rh7DG293400
rosa_wichuraiana	Rw7G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1145
AccB1I	GGYRCC	2 cut(s)	562, 1122
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	583
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	2 cut(s)	207, 1384
AclWI	GGATC	7 cut(s)	401, 414, 1027, 1184, 1442, 1455, 1580
AcoI	YGGCCR	3 cut(s)	264, 718, 796
AcsI	RAATTY	3 cut(s)	428, 973, 1912
AcuI	CTGAAG	1 cut(s)	1473
AcvI	CACGTG	1 cut(s)	1183
AfaI	GTAC	4 cut(s)	205, 552, 982, 1822
AfiI	CCNNNNNNNGG	2 cut(s)	234, 794
AflIII	ACRYGT	2 cut(s)	273, 586
AgsI	TTSAA	9 cut(s)	220, 419, 693, 848, 1161, 1404, 1722, 1785, 1850
AjiI	CACGTC	2 cut(s)	276, 587
AjnI	CCWGG	5 cut(s)	632, 715, 1088, 1343, 1416
AluBI	AGCT	8 cut(s)	80, 95, 627, 1265, 1367, 1512, 1577, 1779
AluI	AGCT	8 cut(s)	80, 95, 627, 1265, 1367, 1512, 1577, 1779
Alw21I	GWGCWC	2 cut(s)	97, 1223
Alw26I	GTCTC	6 cut(s)	242, 282, 357, 645, 1055, 1648
AlwI	GGATC	7 cut(s)	401, 414, 1027, 1184, 1442, 1455, 1580
Ama87I	CYCGRG	1 cut(s)	1028
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	4 cut(s)	264, 718, 796, 1243
ApeKI	GCWGC	5 cut(s)	209, 1019, 1364, 1705, 1889
ApoI	RAATTY	3 cut(s)	428, 973, 1912
AseI	ATTAAT	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	1854
AspS9I	GGNCC	5 cut(s)	173, 335, 452, 1592, 1621
AsuC2I	CCSGG	2 cut(s)	722, 1590
AsuHPI	GGTGA	4 cut(s)	66, 1328, 1582, 1781
AsuII	TTCGAA	1 cut(s)	961
AvaI	CYCGRG	1 cut(s)	1028
AvaII	GGWCC	5 cut(s)	173, 335, 452, 1592, 1621
BalI	TGGCCA	2 cut(s)	266, 798
BamHI	GGATCC	2 cut(s)	406, 1447
BanI	GGYRCC	2 cut(s)	562, 1122
BanII	GRGCYC	2 cut(s)	97, 508
BauI	CACGAG	1 cut(s)	509
BbrPI	CACGTG	1 cut(s)	1183
Bbv12I	GWGCWC	2 cut(s)	97, 1223
BbvI	GCAGC	5 cut(s)	196, 1006, 1376, 1717, 1876
BccI	CCATC	3 cut(s)	56, 848, 1112
BciT130I	CCWGG	5 cut(s)	634, 717, 1090, 1345, 1418
BciVI	GTATCC	2 cut(s)	1208, 1335
BcnI	CCSGG	2 cut(s)	722, 1590
BcoDI	GTCTC	6 cut(s)	242, 282, 357, 645, 1055, 1648
BfaI	CTAG	5 cut(s)	357, 624, 830, 969, 1766
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	2 cut(s)	1208, 1335
BglII	AGATCT	1 cut(s)	1049
BisI	GCNGC	5 cut(s)	210, 1020, 1365, 1706, 1890
BlsI	GCNGC	5 cut(s)	211, 1021, 1366, 1707, 1891
BmcAI	AGTACT	1 cut(s)	982
Bme1390I	CCNGG	7 cut(s)	634, 717, 722, 1090, 1345, 1418, 1590
Bme18I	GGWCC	5 cut(s)	173, 335, 452, 1592, 1621
BmeT110I	CYCGRG	1 cut(s)	1028
BmgBI	CACGTC	2 cut(s)	276, 587
BmgT120I	GGNCC	5 cut(s)	173, 335, 452, 1592, 1621
BmiI	GGNNCC	6 cut(s)	13, 408, 454, 564, 1124, 1449
BmrFI	CCNGG	7 cut(s)	634, 717, 722, 1090, 1345, 1418, 1590
BmrI	ACTGGG	2 cut(s)	195, 690
BmuI	ACTGGG	2 cut(s)	195, 690
BpmI	CTGGAG	1 cut(s)	1439
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	2 cut(s)	965, 1066
BpuMI	CCSGG	2 cut(s)	722, 1590
BsaAI	YACGTR	1 cut(s)	1183
BsaBI	GATNNNNATC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	6 cut(s)	111, 788, 1077, 1246, 1485, 1824
BsaWI	WCCGGW	2 cut(s)	34, 1871
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 794
Bse1I	ACTGG	7 cut(s)	201, 463, 566, 670, 685, 1402, 1433
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	783
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	5 cut(s)	634, 717, 1090, 1345, 1418
BseDI	CCNNGG	6 cut(s)	111, 788, 1077, 1246, 1485, 1824
BseGI	GGATG	6 cut(s)	64, 155, 1098, 1101, 1353, 1645
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	2 cut(s)	234, 794
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	7 cut(s)	168, 362, 735, 744, 1215, 1305, 1670
BseNI	ACTGG	7 cut(s)	201, 463, 566, 670, 685, 1402, 1433
BseRI	GAGGAG	2 cut(s)	311, 1556
BseXI	GCAGC	5 cut(s)	196, 1006, 1376, 1717, 1876
BsgI	GTGCAG	1 cut(s)	1462
Bsh1285I	CGRYCG	1 cut(s)	894
BshFI	GGCC	4 cut(s)	266, 720, 798, 1245
BshNI	GGYRCC	2 cut(s)	562, 1122
BsiEI	CGRYCG	1 cut(s)	894
BsiHKAI	GWGCWC	2 cut(s)	97, 1223
BsiHKCI	CYCGRG	1 cut(s)	1028
BsiSI	CCGG	5 cut(s)	35, 721, 1507, 1590, 1872
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	234, 794
BsmAI	GTCTC	6 cut(s)	242, 282, 357, 645, 1055, 1648
BsmBI	CGTCTC	2 cut(s)	282, 1055
BsmFI	GGGAC	1 cut(s)	438
BsnI	GGCC	4 cut(s)	266, 720, 798, 1245
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	1028
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	3 cut(s)	97, 508, 1223
Bsp13I	TCCGGA	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	7 cut(s)	406, 955, 1032, 1049, 1189, 1447, 1585
BspACI	CCGC	2 cut(s)	207, 1384
BspANI	GGCC	4 cut(s)	266, 720, 798, 1245
BspCNI	CTCAG	7 cut(s)	169, 361, 736, 743, 1216, 1304, 1671
BspEI	TCCGGA	1 cut(s)	34
BspHI	TCATGA	2 cut(s)	528, 1210
BspLI	GGNNCC	6 cut(s)	13, 408, 454, 564, 1124, 1449
BspPI	GGATC	7 cut(s)	401, 414, 1027, 1184, 1442, 1455, 1580
BspT104I	TTCGAA	1 cut(s)	961
BspT107I	GGYRCC	2 cut(s)	562, 1122
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	7 cut(s)	201, 463, 566, 670, 685, 1402, 1433
BssECI	CCNNGG	6 cut(s)	111, 788, 1077, 1246, 1485, 1824
BssMI	GATC	7 cut(s)	406, 955, 1032, 1049, 1189, 1447, 1585
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	4 cut(s)	1077, 1246, 1485, 1824
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	5 cut(s)	634, 717, 1090, 1345, 1418
Bst4CI	ACNGT	5 cut(s)	287, 810, 1154, 1165, 1482
Bst6I	CTCTTC	1 cut(s)	143
BstAPI	GCANNNNNTGC	3 cut(s)	1072, 1234, 1370
BstAUI	TGTACA	1 cut(s)	550
BstBAI	YACGTR	1 cut(s)	1183
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	4 cut(s)	639, 1173, 1219, 1362
BstDEI	CTNAG	8 cut(s)	177, 348, 730, 744, 1224, 1238, 1291, 1679
BstDSI	CCRYGG	2 cut(s)	111, 788
BstF5I	GGATG	6 cut(s)	64, 155, 1098, 1101, 1353, 1645
BstKTI	GATC	7 cut(s)	409, 958, 1035, 1052, 1192, 1450, 1588
BstMAI	GTCTC	6 cut(s)	242, 282, 357, 645, 1055, 1648
BstMBI	GATC	7 cut(s)	406, 955, 1032, 1049, 1189, 1447, 1585
BstMCI	CGRYCG	1 cut(s)	894
BstMWI	GCNNNNNNNGC	4 cut(s)	947, 1072, 1234, 1370
BstNI	CCWGG	5 cut(s)	634, 717, 1090, 1345, 1418
BstNSI	RCATGY	4 cut(s)	1059, 1175, 1364, 1506
BstSCI	CCNGG	7 cut(s)	632, 715, 720, 1088, 1343, 1416, 1588
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	5 cut(s)	196, 1006, 1376, 1717, 1876
BstX2I	RGATCY	5 cut(s)	406, 1032, 1049, 1447, 1585
BstXI	CCANNNNNNTGG	1 cut(s)	1631
BstYI	RGATCY	5 cut(s)	406, 1032, 1049, 1447, 1585
BsuI	GTATCC	2 cut(s)	1208, 1335
BsuRI	GGCC	4 cut(s)	266, 720, 798, 1245
BtgI	CCRYGG	2 cut(s)	111, 788
BtrI	CACGTC	2 cut(s)	276, 587
BtsCI	GGATG	6 cut(s)	64, 155, 1098, 1101, 1353, 1645
BtsIMutI	CAGTG	8 cut(s)	408, 456, 573, 1150, 1395, 1440, 1478, 1570
Cac8I	GCNNGC	4 cut(s)	639, 1173, 1219, 1362
CciI	TCATGA	2 cut(s)	528, 1210
Cfr13I	GGNCC	5 cut(s)	173, 335, 452, 1592, 1621
CseI	GACGC	1 cut(s)	1072
Csp6I	GTAC	4 cut(s)	204, 551, 981, 1821
CviQI	GTAC	4 cut(s)	204, 551, 981, 1821
DdeI	CTNAG	8 cut(s)	177, 348, 730, 744, 1224, 1238, 1291, 1679
DpnI	GATC	7 cut(s)	408, 957, 1034, 1051, 1191, 1449, 1587
DpnII	GATC	7 cut(s)	406, 955, 1032, 1049, 1189, 1447, 1585
DrdI	GACNNNNNNGTC	1 cut(s)	1145
DseDI	GACNNNNNNGTC	1 cut(s)	1145
EaeI	YGGCCR	3 cut(s)	264, 718, 796
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	95
Eco130I	CCWWGG	4 cut(s)	1077, 1246, 1485, 1824
Eco24I	GRGCYC	2 cut(s)	97, 508
Eco31I	GGTCTC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	1840
Eco47I	GGWCC	5 cut(s)	173, 335, 452, 1592, 1621
Eco53kI	GAGCTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	1473
Eco72I	CACGTG	1 cut(s)	1183
Eco88I	CYCGRG	1 cut(s)	1028
EcoICRI	GAGCTC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	5 cut(s)	632, 715, 1088, 1343, 1416
EcoRV	GATATC	1 cut(s)	1840
EcoT14I	CCWWGG	4 cut(s)	1077, 1246, 1485, 1824
EcoT22I	ATGCAT	1 cut(s)	1103
EcoT38I	GRGCYC	2 cut(s)	97, 508
ErhI	CCWWGG	4 cut(s)	1077, 1246, 1485, 1824
Esp3I	CGTCTC	2 cut(s)	282, 1055
FalI	AAGNNNNNCTT	5 cut(s)	31, 63, 531, 563, 1901
FaqI	GGGAC	1 cut(s)	438
FauNDI	CATATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	5 cut(s)	210, 1020, 1365, 1706, 1890
FokI	GGATG	6 cut(s)	71, 162, 1088, 1105, 1360, 1652
FriOI	GRGCYC	2 cut(s)	97, 508
Fsp4HI	GCNGC	5 cut(s)	210, 1020, 1365, 1706, 1890
FspBI	CTAG	5 cut(s)	357, 624, 830, 969, 1766
GluI	GCNGC	5 cut(s)	210, 1020, 1365, 1706, 1890
GsuI	CTGGAG	1 cut(s)	1439
HaeIII	GGCC	4 cut(s)	266, 720, 798, 1245
HapII	CCGG	5 cut(s)	35, 721, 1507, 1590, 1872
HgaI	GACGC	1 cut(s)	1072
HinfI	GANTC	7 cut(s)	104, 343, 620, 689, 739, 751, 1718
HpaII	CCGG	5 cut(s)	35, 721, 1507, 1590, 1872
HphI	GGTGA	4 cut(s)	66, 1328, 1582, 1781
Hpy166II	GTNNAC	6 cut(s)	514, 571, 584, 750, 1150, 1748
Hpy188I	TCNGA	5 cut(s)	192, 919, 1225, 1294, 1585
Hpy8I	GTNNAC	6 cut(s)	514, 571, 584, 750, 1150, 1748
HpyAV	CCTTC	7 cut(s)	206, 326, 413, 432, 461, 845, 1021
HpyCH4III	ACNGT	5 cut(s)	287, 810, 1154, 1165, 1482
HpyCH4IV	ACGT	7 cut(s)	242, 275, 586, 1146, 1182, 1378, 1819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	947, 1072, 1234, 1370
HpyF3I	CTNAG	8 cut(s)	177, 348, 730, 744, 1224, 1238, 1291, 1679
HpySE526I	ACGT	7 cut(s)	242, 275, 586, 1146, 1182, 1378, 1819
Kpn2I	TCCGGA	1 cut(s)	34
Kzo9I	GATC	7 cut(s)	406, 955, 1032, 1049, 1189, 1447, 1585
LmnI	GCTCC	4 cut(s)	92, 1168, 1386, 1509
Lsp1109I	GCAGC	5 cut(s)	196, 1006, 1376, 1717, 1876
MaeI	CTAG	5 cut(s)	357, 624, 830, 969, 1766
MaeII	ACGT	7 cut(s)	242, 275, 586, 1146, 1182, 1378, 1819
MaeIII	GTNAC	6 cut(s)	72, 484, 886, 1001, 1178, 1522
MalI	GATC	7 cut(s)	408, 957, 1034, 1051, 1191, 1449, 1587
MboI	GATC	7 cut(s)	406, 955, 1032, 1049, 1189, 1447, 1585
MboII	GAAGA	7 cut(s)	130, 913, 950, 1417, 1466, 1727, 1847
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	5 cut(s)	406, 1032, 1049, 1447, 1585
MhlI	GDGCHC	3 cut(s)	97, 508, 1223
MlsI	TGGCCA	2 cut(s)	266, 798
MluCI	AATT	8 cut(s)	414, 428, 664, 973, 1070, 1552, 1688, 1912
MluNI	TGGCCA	2 cut(s)	266, 798
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	4 cut(s)	138, 225, 1129, 1648
Mox20I	TGGCCA	2 cut(s)	266, 798
Mph1103I	ATGCAT	1 cut(s)	1103
MroI	TCCGGA	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	1854
MscI	TGGCCA	2 cut(s)	266, 798
MseI	TTAA	4 cut(s)	318, 497, 593, 1700
MslI	CAYNNNNRTG	1 cut(s)	1563
Msp20I	TGGCCA	2 cut(s)	266, 798
MspA1I	CMGCKG	2 cut(s)	209, 1367
MspI	CCGG	5 cut(s)	35, 721, 1507, 1590, 1872
MspR9I	CCNGG	7 cut(s)	634, 717, 722, 1090, 1345, 1418, 1590
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	5 cut(s)	634, 717, 1090, 1345, 1418
MwoI	GCNNNNNNNGC	4 cut(s)	947, 1072, 1234, 1370
NciI	CCSGG	2 cut(s)	722, 1590
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	7 cut(s)	406, 955, 1032, 1049, 1189, 1447, 1585
NlaIV	GGNNCC	6 cut(s)	13, 408, 454, 564, 1124, 1449
NmuCI	GTSAC	5 cut(s)	72, 484, 1001, 1178, 1522
NsiI	ATGCAT	1 cut(s)	1103
NspI	RCATGY	4 cut(s)	1059, 1175, 1364, 1506
NspV	TTCGAA	1 cut(s)	961
PaeI	GCATGC	2 cut(s)	1175, 1364
PagI	TCATGA	2 cut(s)	528, 1210
PcsI	WCGNNNNNNNCGW	1 cut(s)	1143
PdmI	GAANNNNTTC	1 cut(s)	1854
PfeI	GAWTC	6 cut(s)	104, 343, 620, 689, 739, 1718
PflMI	CCANNNNNTGG	1 cut(s)	794
PfoI	TCCNGGA	2 cut(s)	1416, 1588
PkrI	GCNGC	5 cut(s)	211, 1021, 1366, 1707, 1891
PleI	GAGTC	1 cut(s)	745
PmaCI	CACGTG	1 cut(s)	1183
PmlI	CACGTG	1 cut(s)	1183
PpsI	GAGTC	1 cut(s)	745
Ppu21I	YACGTR	1 cut(s)	1183
PpuMI	RGGWCCY	1 cut(s)	335
PshBI	ATTAAT	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	5 cut(s)	632, 715, 1088, 1343, 1416
PspCI	CACGTG	1 cut(s)	1183
PspGI	CCWGG	5 cut(s)	632, 715, 1088, 1343, 1416
PspN4I	GGNNCC	6 cut(s)	13, 408, 454, 564, 1124, 1449
PspPI	GGNCC	5 cut(s)	173, 335, 452, 1592, 1621
PspPPI	RGGWCCY	1 cut(s)	335
PsuI	RGATCY	5 cut(s)	406, 1032, 1049, 1447, 1585
PvuII	CAGCTG	1 cut(s)	1367
RsaI	GTAC	4 cut(s)	205, 552, 982, 1822
RsaNI	GTAC	4 cut(s)	204, 551, 981, 1821
RseI	CAYNNNNRTG	1 cut(s)	1563
SacI	GAGCTC	1 cut(s)	97
SaqAI	TTAA	4 cut(s)	318, 497, 593, 1700
SatI	GCNGC	5 cut(s)	210, 1020, 1365, 1706, 1890
Sau3AI	GATC	7 cut(s)	406, 955, 1032, 1049, 1189, 1447, 1585
Sau96I	GGNCC	5 cut(s)	173, 335, 452, 1592, 1621
ScaI	AGTACT	1 cut(s)	982
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	7 cut(s)	634, 717, 722, 1090, 1345, 1418, 1590
SduI	GDGCHC	3 cut(s)	97, 508, 1223
SfcI	CTRYAG	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	961
SinI	GGWCC	5 cut(s)	173, 335, 452, 1592, 1621
SmiMI	CAYNNNNRTG	1 cut(s)	1563
SmlI	CTYRAG	2 cut(s)	944, 1045
SmoI	CTYRAG	2 cut(s)	944, 1045
SphI	GCATGC	2 cut(s)	1175, 1364
Sse9I	AATT	8 cut(s)	414, 428, 664, 973, 1070, 1552, 1688, 1912
SsiI	CCGC	2 cut(s)	207, 1384
SspI	AATATT	2 cut(s)	1603, 1865
SspMI	CTAG	5 cut(s)	357, 624, 830, 969, 1766
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	7 cut(s)	632, 715, 720, 1088, 1343, 1416, 1588
StyI	CCWWGG	4 cut(s)	1077, 1246, 1485, 1824
TaaI	ACNGT	5 cut(s)	287, 810, 1154, 1165, 1482
TaiI	ACGT	7 cut(s)	245, 278, 589, 1149, 1185, 1381, 1822
TaqI	TCGA	4 cut(s)	649, 763, 961, 1694
TaqII	GACCGA	2 cut(s)	908, 1569
TasI	AATT	8 cut(s)	414, 428, 664, 973, 1070, 1552, 1688, 1912
TatI	WGTACW	2 cut(s)	550, 980
TfiI	GAWTC	6 cut(s)	104, 343, 620, 689, 739, 1718
Tru1I	TTAA	4 cut(s)	318, 497, 593, 1700
Tru9I	TTAA	4 cut(s)	318, 497, 593, 1700
TscAI	CASTG	8 cut(s)	408, 463, 573, 1157, 1402, 1440, 1485, 1570
TseFI	GTSAC	5 cut(s)	72, 484, 1001, 1178, 1522
TseI	GCWGC	5 cut(s)	209, 1019, 1364, 1705, 1889
Tsp45I	GTSAC	5 cut(s)	72, 484, 1001, 1178, 1522
TspDTI	ATGAA	9 cut(s)	115, 284, 480, 614, 618, 795, 1199, 1227, 1547
TspGWI	ACGGA	2 cut(s)	128, 503
TspRI	CASTG	8 cut(s)	408, 463, 573, 1157, 1402, 1440, 1485, 1570
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	5 cut(s)	173, 335, 452, 1592, 1621
VspI	ATTAAT	1 cut(s)	497
XapI	RAATTY	3 cut(s)	428, 973, 1912
XbaI	TCTAGA	1 cut(s)	968
XceI	RCATGY	4 cut(s)	1059, 1175, 1364, 1506
XcmI	CCANNNNNNNNNTGG	3 cut(s)	259, 677, 1253
XmiI	GTMKAC	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	1854
XspI	CTAG	5 cut(s)	357, 624, 830, 969, 1766
ZrmI	AGTACT	1 cut(s)	982
Zsp2I	ATGCAT	1 cut(s)	1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.