Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003038

Physical Location & Seq

Genomic Coordinates Reverse (-)

36729304 .. 36735144

Gene Structure 5841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGAAGATGGTGTTTCATCACCAGCTACCATGCTGGGAGCTCCAACTGATTCTGCAATGGATTTAGACTTCATGGATGAATTGTTCTTAGATGGATGCTGGTTGGAAACAATAGATGGAGCTGGATTTCCTAATCAGAGTCCCCTCAGTTCTGGTGCCATTTTGGACTCCCCGTTTTTCTGGCCTACTTTGGGGACCAATGGAAATTTCAGCACGAACCCATTTCAGACCAGTAATCAAGAAGAGACACAGACACCACTGTTCAATGAACTCCAGGAAGAAGCTCCAGCCAACATGCAGTCTCCTAGCCAGAATATGACAGATGTTGTCAGGTACTCTGGTCAATCAGGAAATCAAATTATTGAAGGTCATGATTTCAGTAGAGGTATCTGGATTGGTCCCATAGAGAATCAAGTTTCTGCACCATCTGTGATGGAGAGATTAAAGAGGGCACTTGTGTACATGAAAGATGTCATGAGAGACAAAAATGTTCTTGTACAGGTATGGCTGCCTGTAAATAGAGGGGGTAGACGTGTTTTAACAACTAATGATCTACTTTCCTCACTTGATTCTAGCTGTCCAAGGCTTGCCAAGTATCACGACATCTCTGTGAATTATCAGTTCTCAACTGGAGAAGATTCTAAGGAGTTTGTCAAGGGGTTGCCTGGTCGTGTTTTCTCAGGTAAGGTTCCTGAGTGGACTCCTGATGTTCGATTATTTAGAAGTGACGAGTACCCACGGGTTGATGATGCTCAACGGTATGATGTACGAGGAACTCTTGCCCTCCCGATCTTTGAACAAGGTAGTAGAACTTGTTTGGGTGTAATTGAGGTTGTTATGACCACCCAGAAGATGCAGTATCAACCTGAGCTTGAAAGTGTTTGCAAGGCACTCGAGGCTGTTGATCTTCGGAGTTCAAAAAATTTGAATACTCATAATTCAAAGCAGGTGAGTGACAAGCCCTACAAAGCTGCATTACCTGAGATCCGAGAGGTCTTGAAATCTGCATGTGAGACGCACAACTTGCCCTTGGCACAAACTTGGGTGTCATGCATCCAACAAGGCAAAGATGGATGCCGACATTCTGATGACAACTACGTTCACTGTGTTTCAACTGTGGATGATGCTTGCCATGTGACTTATCCTTATATTAAGGATTTTCATGAAGCTTGCTCTGAGCATCACTTGTTAAAAGGCCAAGGCATTGTTGGGAGAGCTTTTATGACTAATCAACCATGCTTCTCAAATGATATAACTTCCTTAGCCAAAACAGAGTATCCTTTATCTCACCATGCCAGGATGTTTGGATTGCATGCAGCTGTTGCAATACGTCTACGGAGCATCCACACTGGTTCAACTGATTTTGTCCTGGAGTTCTTCTTGCCAGTGGATTGCAGGGATCCTGAACAACACAAGAAGATGCTAACTTCACTGTCTTTAATCATACAAAATATTTGCCGGAGCTTACGGGTTGTCACAGACAAGGAATTAACGGAAGAAACAGATTTGCCAGTCAGTGAAGTGATAGTCCCTTCAGATCCCAGGCCTAGTGGTATTTCCTCTTTTGCAGAGGTGCAACAGACTGATAATGATGTCTCAATATTCCCAAAGGAAAAGGCAACGAAGATGCCGAGTGCGAAATCCTCAAAGTTGAGGCCACACAACAAAAAAGAAGGTGTTGACTGTGTTGGAGAGTTTTCTACATTCGGTGAGGGTAGCTTCTCAATTGTTGGTGCAAGTAAGACCGGAGAGAAACGACGTACCAAGGCGGAGAAAGCTATCACCTTGGAAGTTCTTCGAAAATATTTTTCTGGTAGCCTGAAAGATGCTGCAAAGAGTCTTGGAGTTTGCTCCACAACCTTGAAAAGGATATGCCGACAACATGGGATTAAACGTTGGCCATCTCGAAAAATCAAGAAGGTTGGTCACTCCTTAGAGAAACTCCAACGTGTAATTGATTCAGTCCAAGGTGCGTCCAGTGCTTTCCAAATCAATTCTTTCTATACAAGCTATCCAGAGCTAGCCTCTCCAAATTTGTCTGGGACCAGCCCATTTTCAACTTCAAAGCTGATTGATCGGCCAAGGCCATCAGATGTGCCACCTGAAGGTGGTGTTTTGAGTCCCCAAGCTACTGCATCAAAATCTCCCTCATCCTCATGTAGTCAGTGTTCCAGTTCAAGCCAGTGCTGTTCCAGCAAGACAGAGCAGCATCTTCCCACATGGAGCATCGCAGATAATGACGATCCAATTGCTGGAGATAATAGAGTGCTGAAGAGGGTCAGAAGTGAAGCAGAGTTGAATGCCCTTCGTCAGGGTGGAGTGGATGAGCTAATGCAGAGATCCCAGAGCCATAAATATCTCAGTGAGCAACAAAACATGCAGTCTTTTCGACCTCCACTGAAATGTGATGGCCAGATAGCTCAAGAAGGGGATGCTCGAAGAGTAAAAGTCGCATATGGGGATGAGAAAACTCGATTTCGCATTCAAAATAACTGGAGATATGAAGATTTGGGGCAAGAAATCGCAAAGCGATTTGGTATAGAGGACATGAGTAGATTTGATATGAAGTACTTGGACGATGATTCAGAGTGGATCTTGTTAACATGTGATGCAGATTTAGATGAGTGCCTTGATGTATGTCGCTCTTCACGATGCAGTACAATTAAGCTCTCCCTCCAGCTTTCTCGTCGTCATTTAGAAAGGTTCTCAGGTAGCAGTGGCCCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

909

Amino Acids

101.3

Weight (kDa)

6.21

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	317 - 490	6.4e-84	NLP protein GAF domain
RWP-RK	PF02042	594 - 641	1.4e-23	RWP-RK domain
PB1	PF00564	813 - 893	1.4e-19	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20640 AT1G20640 AT1G20640 AT1G76350 AT1G76350 AT1G76350 AT1G76350
fragaria_vesca	FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270 FvH4_5g25270
malus_domestica	MD06G1009200.v1.1 MD16G1285500.v1.1
prunus_persica	Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1 Prupe.5G011200_v2.0.a1
pyrus_communis	pycom06g00770 pycom16g25880
rosa_chinensis	RchiOBHm_Chr7g0215411
rosa_laevigata	RLG00000002660 RLG00000002663
rosa_multiflora	Rmu_co8448299.1_g000001 Rmu_sc0000355.1_g000001 Rmu_sc0005928.1_g000011
rosa_roxburghii	Rroxscaffold_3G00244210
rosa_rugosa	Rorug07G0153300 Rorug07G0153400
rosa_samantha	Rh7AG289800 Rh7BG281700 Rh7CG309400 Rh7DG293400
rosa_wichuraiana	Rw7G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	937
Acc36I	ACCTGC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	2252
AccI	GTMKAC	2 cut(s)	529, 1333
AciI	CCGC	1 cut(s)	1769
AclI	AACGTT	1 cut(s)	1894
AclWI	GGATC	7 cut(s)	979, 1394, 1407, 1532, 2237, 2334, 2600
AcoI	YGGCCR	3 cut(s)	1898, 2078, 2410
AcsI	RAATTY	3 cut(s)	205, 922, 2032
AcuI	CTGAAG	3 cut(s)	1518, 2124, 2291
AfaI	GTAC	8 cut(s)	335, 461, 498, 734, 768, 1762, 2570, 2659
AfiI	CCNNNNNNNGG	6 cut(s)	191, 1866, 2105, 2108, 2252, 2311
AflIII	ACRYGT	3 cut(s)	532, 1948, 2603
AjiI	CACGTC	1 cut(s)	533
AjnI	CCWGG	5 cut(s)	273, 664, 1295, 1368, 1541
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	5 cut(s)	239, 306, 474, 1007, 1600
AlwI	GGATC	7 cut(s)	979, 1394, 1407, 1532, 2237, 2334, 2600
Ama87I	CYCGRG	1 cut(s)	893
AoxI	GGCC	9 cut(s)	182, 1195, 1544, 1655, 1898, 2078, 2084, 2410, 2719
ApeKI	GCWGC	5 cut(s)	508, 971, 1316, 1829, 2206
ApoI	RAATTY	3 cut(s)	205, 922, 2032
Asp700I	GAANNNNTTC	1 cut(s)	1794
AspS9I	GGNCC	4 cut(s)	195, 398, 2043, 2720
AsuHPI	GGTGA	5 cut(s)	12, 961, 1280, 1721, 1774
AsuII	TTCGAA	1 cut(s)	1798
AsuNHI	GCTAGC	1 cut(s)	2020
AvaI	CYCGRG	1 cut(s)	893
AvaII	GGWCC	3 cut(s)	195, 398, 2043
BaeGI	GKGCMC	1 cut(s)	454
BaeI	ACNNNNGTAYC	2 cut(s)	325, 358
BalI	TGGCCA	2 cut(s)	1900, 2412
BamHI	GGATCC	1 cut(s)	1399
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	5 cut(s)	495, 958, 1328, 1816, 2218
BccI	CCATC	9 cut(s)	2, 86, 110, 427, 433, 1064, 1909, 2095, 2402
BcgI	CGANNNNNNTGC	6 cut(s)	874, 908, 2231, 2265, 2369, 2403
BciT130I	CCWGG	5 cut(s)	275, 666, 1297, 1370, 1543
BciVI	GTATCC	1 cut(s)	1287
BcoDI	GTCTC	5 cut(s)	239, 306, 474, 1007, 1600
BfaI	CTAG	4 cut(s)	306, 573, 1548, 2021
BfuAI	ACCTGC	1 cut(s)	937
BfuI	GTATCC	1 cut(s)	1287
BisI	GCNGC	5 cut(s)	509, 972, 1317, 1830, 2207
BlsI	GCNGC	5 cut(s)	510, 973, 1318, 1831, 2208
BmcAI	AGTACT	1 cut(s)	2570
Bme1390I	CCNGG	5 cut(s)	275, 666, 1297, 1370, 1543
Bme18I	GGWCC	3 cut(s)	195, 398, 2043
BmeT110I	CYCGRG	1 cut(s)	893
BmgBI	CACGTC	1 cut(s)	533
BmgT120I	GGNCC	4 cut(s)	195, 398, 2043, 2720
BmiI	GGNNCC	6 cut(s)	157, 196, 400, 690, 1401, 2044
BmrFI	CCNGG	5 cut(s)	275, 666, 1297, 1370, 1543
BmtI	GCTAGC	1 cut(s)	2024
BplI	GAGNNNNNCTC	2 cut(s)	2009, 2041
BpmI	CTGGAG	7 cut(s)	257, 270, 651, 1391, 2274, 2515, 2660
Bpu10I	CCTNAGC	2 cut(s)	867, 1261
Bpu14I	TTCGAA	1 cut(s)	1798
BpuEI	CTTGAG	1 cut(s)	2406
BsaJI	CCNNGG	9 cut(s)	581, 737, 1029, 1198, 1541, 1764, 1785, 1966, 2081
BsaWI	WCCGGW	1 cut(s)	1745
Bsc4I	CCNNNNNNNGG	6 cut(s)	191, 1866, 2105, 2108, 2252, 2311
Bse1I	ACTGG	9 cut(s)	231, 634, 1354, 1385, 1511, 1977, 2172, 2182, 2498
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	5 cut(s)	275, 666, 1297, 1370, 1543
BseDI	CCNNGG	9 cut(s)	581, 737, 1029, 1198, 1541, 1764, 1785, 1966, 2081
BseLI	CCNNNNNNNGG	6 cut(s)	191, 1866, 2105, 2108, 2252, 2311
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	8 cut(s)	160, 684, 693, 858, 972, 1167, 2374, 2721
BseNI	ACTGG	9 cut(s)	231, 634, 1354, 1385, 1511, 1977, 2172, 2182, 2498
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	5 cut(s)	495, 958, 1328, 1816, 2218
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	9 cut(s)	184, 1197, 1546, 1657, 1900, 2080, 2086, 2412, 2721
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	2 cut(s)	1459, 1746
BslFI	GGGAC	6 cut(s)	126, 208, 384, 1514, 2056, 2106
BslI	CCNNNNNNNGG	6 cut(s)	191, 1866, 2105, 2108, 2252, 2311
BsmAI	GTCTC	5 cut(s)	239, 306, 474, 1007, 1600
BsmBI	CGTCTC	1 cut(s)	1007
BsmFI	GGGAC	6 cut(s)	126, 208, 384, 1514, 2056, 2106
BsmI	GAATGC	2 cut(s)	2305, 2481
BsnI	GGCC	9 cut(s)	184, 1197, 1546, 1657, 1900, 2080, 2086, 2412, 2721
BsoBI	CYCGRG	1 cut(s)	893
Bsp119I	TTCGAA	1 cut(s)	1798
Bsp1286I	GDGCHC	2 cut(s)	43, 454
Bsp1407I	TGTACA	2 cut(s)	459, 496
BspACI	CCGC	1 cut(s)	1769
BspANI	GGCC	9 cut(s)	184, 1197, 1546, 1657, 1900, 2080, 2086, 2412, 2721
BspCNI	CTCAG	8 cut(s)	159, 685, 692, 859, 973, 1168, 2373, 2720
BspHI	TCATGA	4 cut(s)	370, 474, 1162, 2726
BspLI	GGNNCC	6 cut(s)	157, 196, 400, 690, 1401, 2044
BspMI	ACCTGC	1 cut(s)	937
BspOI	GCTAGC	1 cut(s)	2024
BspPI	GGATC	7 cut(s)	979, 1394, 1407, 1532, 2237, 2334, 2600
BspQI	GCTCTTC	1 cut(s)	2650
BspT104I	TTCGAA	1 cut(s)	1798
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	63
BsrGI	TGTACA	2 cut(s)	459, 496
BsrI	ACTGG	9 cut(s)	231, 634, 1354, 1385, 1511, 1977, 2172, 2182, 2498
BssECI	CCNNGG	9 cut(s)	581, 737, 1029, 1198, 1541, 1764, 1785, 1966, 2081
BssT1I	CCWWGG	7 cut(s)	581, 1029, 1198, 1764, 1785, 1966, 2081
Bst2UI	CCWGG	5 cut(s)	275, 666, 1297, 1370, 1543
Bst4CI	ACNGT	6 cut(s)	261, 759, 1106, 1117, 1434, 1685
Bst6I	CTCTTC	4 cut(s)	237, 2267, 2434, 2650
BstAPI	GCANNNNNTGC	2 cut(s)	1024, 1322
BstAUI	TGTACA	2 cut(s)	459, 496
BstBI	TTCGAA	1 cut(s)	1798
BstC8I	GCNNGC	5 cut(s)	588, 1129, 1171, 1314, 2022
BstDSI	CCRYGG	1 cut(s)	737
BstENI	CCTNNNNNAGG	2 cut(s)	1864, 2309
BstMAI	GTCTC	5 cut(s)	239, 306, 474, 1007, 1600
BstMWI	GCNNNNNNNGC	6 cut(s)	896, 1024, 1322, 1775, 1979, 2193
BstNI	CCWGG	5 cut(s)	275, 666, 1297, 1370, 1543
BstNSI	RCATGY	5 cut(s)	298, 1011, 1316, 2380, 2607
BstSCI	CCNGG	5 cut(s)	273, 664, 1295, 1368, 1541
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	5 cut(s)	495, 958, 1328, 1816, 2218
BstX2I	RGATCY	5 cut(s)	984, 1399, 1537, 2339, 2592
BstYI	RGATCY	5 cut(s)	984, 1399, 1537, 2339, 2592
BsuI	GTATCC	1 cut(s)	1287
BsuRI	GGCC	9 cut(s)	184, 1197, 1546, 1657, 1900, 2080, 2086, 2412, 2721
BtgI	CCRYGG	1 cut(s)	737
BtgZI	GCGATG	1 cut(s)	2212
BtrI	CACGTC	1 cut(s)	533
BtsI	GCAGTG	1 cut(s)	2722
BveI	ACCTGC	1 cut(s)	937
Cac8I	GCNNGC	5 cut(s)	588, 1129, 1171, 1314, 2022
CciI	TCATGA	4 cut(s)	370, 474, 1162, 2726
Cfr13I	GGNCC	4 cut(s)	195, 398, 2043, 2720
CseI	GACGC	2 cut(s)	1024, 1962
Csp6I	GTAC	8 cut(s)	334, 460, 497, 733, 767, 1761, 2569, 2658
CviQI	GTAC	8 cut(s)	334, 460, 497, 733, 767, 1761, 2569, 2658
EaeI	YGGCCR	3 cut(s)	1898, 2078, 2410
Eam1104I	CTCTTC	4 cut(s)	237, 2267, 2434, 2650
EarI	CTCTTC	4 cut(s)	237, 2267, 2434, 2650
EciI	GGCGGA	1 cut(s)	1784
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	7 cut(s)	581, 1029, 1198, 1764, 1785, 1966, 2081
Eco147I	AGGCCT	1 cut(s)	1546
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	3 cut(s)	195, 398, 2043
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	3 cut(s)	1518, 2124, 2291
Eco88I	CYCGRG	1 cut(s)	893
EcoICRI	GAGCTC	1 cut(s)	41
EcoNI	CCTNNNNNAGG	2 cut(s)	1864, 2309
EcoRII	CCWGG	5 cut(s)	273, 664, 1295, 1368, 1541
EcoT14I	CCWWGG	7 cut(s)	581, 1029, 1198, 1764, 1785, 1966, 2081
EcoT22I	ATGCAT	1 cut(s)	1055
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	7 cut(s)	581, 1029, 1198, 1764, 1785, 1966, 2081
Esp3I	CGTCTC	1 cut(s)	1007
FaqI	GGGAC	6 cut(s)	126, 208, 384, 1514, 2056, 2106
FauNDI	CATATG	1 cut(s)	2455
FblI	GTMKAC	2 cut(s)	529, 1333
Fnu4HI	GCNGC	5 cut(s)	509, 972, 1317, 1830, 2207
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	5 cut(s)	509, 972, 1317, 1830, 2207
FspBI	CTAG	4 cut(s)	306, 573, 1548, 2021
GluI	GCNGC	5 cut(s)	509, 972, 1317, 1830, 2207
GsaI	CCCAGC	1 cut(s)	38
GsuI	CTGGAG	7 cut(s)	257, 270, 651, 1391, 2274, 2515, 2660
HaeIII	GGCC	9 cut(s)	184, 1197, 1546, 1657, 1900, 2080, 2086, 2412, 2721
HapII	CCGG	2 cut(s)	1459, 1746
HgaI	GACGC	2 cut(s)	1024, 1962
HincII	GTYRAC	2 cut(s)	1681, 2601
HindII	GTYRAC	2 cut(s)	1681, 2601
HindIII	AAGCTT	1 cut(s)	1167
HpaI	GTTAAC	1 cut(s)	2601
HpaII	CCGG	2 cut(s)	1459, 1746
HphI	GGTGA	5 cut(s)	12, 961, 1280, 1721, 1774
Hpy166II	GTNNAC	7 cut(s)	460, 530, 699, 1102, 1334, 1681, 2601
Hpy8I	GTNNAC	7 cut(s)	460, 530, 699, 1102, 1334, 1681, 2601
Hpy99I	CGWCG	2 cut(s)	1761, 2691
HpyAV	CCTTC	7 cut(s)	359, 1542, 1667, 1912, 2099, 2315, 2420
HpyCH4III	ACNGT	6 cut(s)	261, 759, 1106, 1117, 1434, 1685
HpyCH4IV	ACGT	6 cut(s)	532, 1098, 1330, 1759, 1894, 1948
HpyF10VI	GCNNNNNNNGC	6 cut(s)	896, 1024, 1322, 1775, 1979, 2193
HpySE526I	ACGT	6 cut(s)	532, 1098, 1330, 1759, 1894, 1948
KspAI	GTTAAC	1 cut(s)	2601
LguI	GCTCTTC	1 cut(s)	2650
LmnI	GCTCC	8 cut(s)	38, 46, 119, 289, 1338, 1461, 1856, 2223
Lsp1109I	GCAGC	5 cut(s)	495, 958, 1328, 1816, 2218
MaeI	CTAG	4 cut(s)	306, 573, 1548, 2021
MaeII	ACGT	6 cut(s)	532, 1098, 1330, 1759, 1894, 1948
MaeIII	GTNAC	5 cut(s)	725, 953, 1135, 1474, 1925
MfeI	CAATTG	2 cut(s)	1725, 2247
MflI	RGATCY	5 cut(s)	984, 1399, 1537, 2339, 2592
MhlI	GDGCHC	2 cut(s)	43, 454
MlsI	TGGCCA	2 cut(s)	1900, 2412
MluNI	TGGCCA	2 cut(s)	1900, 2412
MlyI	GAGTC	5 cut(s)	148, 161, 694, 1846, 2128
MmeI	TCCRAC	5 cut(s)	68, 84, 1081, 1669, 1969
Mox20I	TGGCCA	2 cut(s)	1900, 2412
Mph1103I	ATGCAT	1 cut(s)	1055
MroXI	GAANNNNTTC	1 cut(s)	1794
MscI	TGGCCA	2 cut(s)	1900, 2412
MseI	TTAA	9 cut(s)	443, 539, 1152, 1190, 1439, 1490, 1890, 2600, 2664
MslI	CAYNNNNRTG	4 cut(s)	608, 1086, 2155, 2401
Msp20I	TGGCCA	2 cut(s)	1900, 2412
MspA1I	CMGCKG	1 cut(s)	1319
MspI	CCGG	2 cut(s)	1459, 1746
MspR9I	CCNGG	5 cut(s)	275, 666, 1297, 1370, 1543
MunI	CAATTG	2 cut(s)	1725, 2247
Mva1269I	GAATGC	2 cut(s)	2305, 2481
MvaI	CCWGG	5 cut(s)	275, 666, 1297, 1370, 1543
MwoI	GCNNNNNNNGC	6 cut(s)	896, 1024, 1322, 1775, 1979, 2193
NdeI	CATATG	1 cut(s)	2455
NheI	GCTAGC	1 cut(s)	2020
NlaIV	GGNNCC	6 cut(s)	157, 196, 400, 690, 1401, 2044
NmeAIII	GCCGAG	1 cut(s)	1656
NmuCI	GTSAC	5 cut(s)	725, 953, 1135, 1474, 1925
NsiI	ATGCAT	1 cut(s)	1055
NspI	RCATGY	5 cut(s)	298, 1011, 1316, 2380, 2607
NspV	TTCGAA	1 cut(s)	1798
PaeI	GCATGC	1 cut(s)	1316
PaeR7I	CTCGAG	1 cut(s)	893
PagI	TCATGA	4 cut(s)	370, 474, 1162, 2726
PaqCI	CACCTGC	1 cut(s)	937
PceI	AGGCCT	1 cut(s)	1546
PciI	ACATGT	1 cut(s)	2603
PciSI	GCTCTTC	1 cut(s)	2650
PcsI	WCGNNNNNNNCGW	2 cut(s)	1628, 2647
PctI	GAATGC	2 cut(s)	2305, 2481
PdmI	GAANNNNTTC	1 cut(s)	1794
PfeI	GAWTC	6 cut(s)	50, 409, 569, 638, 1958, 2582
PflMI	CCANNNNNTGG	1 cut(s)	2252
PfoI	TCCNGGA	2 cut(s)	273, 1368
PkrI	GCNGC	5 cut(s)	510, 973, 1318, 1831, 2208
PleI	GAGTC	5 cut(s)	147, 161, 694, 1845, 2127
PpsI	GAGTC	5 cut(s)	147, 161, 694, 1845, 2127
PscI	ACATGT	1 cut(s)	2603
Psp124BI	GAGCTC	1 cut(s)	43
Psp1406I	AACGTT	1 cut(s)	1894
Psp6I	CCWGG	5 cut(s)	273, 664, 1295, 1368, 1541
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	5 cut(s)	273, 664, 1295, 1368, 1541
PspN4I	GGNNCC	6 cut(s)	157, 196, 400, 690, 1401, 2044
PspPI	GGNCC	4 cut(s)	195, 398, 2043, 2720
PspXI	VCTCGAGB	1 cut(s)	893
PsrI	GAACNNNNNNTAC	2 cut(s)	2152, 2184
PsuI	RGATCY	5 cut(s)	984, 1399, 1537, 2339, 2592
PvuII	CAGCTG	1 cut(s)	1319
RsaI	GTAC	8 cut(s)	335, 461, 498, 734, 768, 1762, 2570, 2659
RsaNI	GTAC	8 cut(s)	334, 460, 497, 733, 767, 1761, 2569, 2658
RseI	CAYNNNNRTG	4 cut(s)	608, 1086, 2155, 2401
SacI	GAGCTC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	2650
SaqAI	TTAA	9 cut(s)	443, 539, 1152, 1190, 1439, 1490, 1890, 2600, 2664
SatI	GCNGC	5 cut(s)	509, 972, 1317, 1830, 2207
Sau96I	GGNCC	4 cut(s)	195, 398, 2043, 2720
ScaI	AGTACT	1 cut(s)	2570
SchI	GAGTC	5 cut(s)	148, 161, 694, 1846, 2128
ScrFI	CCNGG	5 cut(s)	275, 666, 1297, 1370, 1543
SduI	GDGCHC	2 cut(s)	43, 454
Sfr274I	CTCGAG	1 cut(s)	893
SfuI	TTCGAA	1 cut(s)	1798
SinI	GGWCC	3 cut(s)	195, 398, 2043
SlaI	CTCGAG	1 cut(s)	893
SmiMI	CAYNNNNRTG	4 cut(s)	608, 1086, 2155, 2401
SmlI	CTYRAG	2 cut(s)	893, 2421
SmoI	CTYRAG	2 cut(s)	893, 2421
SphI	GCATGC	1 cut(s)	1316
SseBI	AGGCCT	1 cut(s)	1546
SsiI	CCGC	1 cut(s)	1769
SspI	AATATT	3 cut(s)	1453, 1602, 1805
SspMI	CTAG	4 cut(s)	306, 573, 1548, 2021
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	1546
StyD4I	CCNGG	5 cut(s)	273, 664, 1295, 1368, 1541
StyI	CCWWGG	7 cut(s)	581, 1029, 1198, 1764, 1785, 1966, 2081
TaaI	ACNGT	6 cut(s)	261, 759, 1106, 1117, 1434, 1685
TaiI	ACGT	6 cut(s)	535, 1101, 1333, 1762, 1897, 1951
TaqI	TCGA	7 cut(s)	712, 894, 1798, 1906, 2389, 2437, 2473
TatI	WGTACW	4 cut(s)	459, 496, 2568, 2657
TfiI	GAWTC	6 cut(s)	50, 409, 569, 638, 1958, 2582
Tru1I	TTAA	9 cut(s)	443, 539, 1152, 1190, 1439, 1490, 1890, 2600, 2664
Tru9I	TTAA	9 cut(s)	443, 539, 1152, 1190, 1439, 1490, 1890, 2600, 2664
TseFI	GTSAC	5 cut(s)	725, 953, 1135, 1474, 1925
TseI	GCWGC	5 cut(s)	508, 971, 1316, 1829, 2206
Tsp45I	GTSAC	5 cut(s)	725, 953, 1135, 1474, 1925
TspGWI	ACGGA	2 cut(s)	1351, 1508
Van91I	CCANNNNNTGG	1 cut(s)	2252
VpaK11BI	GGWCC	3 cut(s)	195, 398, 2043
XagI	CCTNNNNNAGG	2 cut(s)	1864, 2309
XapI	RAATTY	3 cut(s)	205, 922, 2032
XceI	RCATGY	5 cut(s)	298, 1011, 1316, 2380, 2607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1205
XhoI	CTCGAG	1 cut(s)	893
XmiI	GTMKAC	2 cut(s)	529, 1333
XmnI	GAANNNNTTC	1 cut(s)	1794
XspI	CTAG	4 cut(s)	306, 573, 1548, 2021
ZrmI	AGTACT	1 cut(s)	2570
Zsp2I	ATGCAT	1 cut(s)	1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.