Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008559

Physical Location & Seq

Genomic Coordinates Reverse (-)

17518132 .. 17521712

Gene Structure 3581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGACTTGCAGCAAAAAGATGACCCTCCTAAATCCTCAGTTAAAGAAGCAATGACTGTGTGTCAGCATTTTCTGTTGAATTTCATCATGGGAAATTACTTGGGTCCTGATATCAAGTTTGATAAGGTAAGATACTCGGCATATCAAAGATTAGCGGAAGGTTCCCCTCCGTATGAGTCGAGAGATTTGGGTGCTTCATATGTTAGTGTGTCTCTGTTGGAGAGTCTATATTACTATATCCTGAGAAATGCTCAACCTAGCCTGGTTCTGAGACCACATATGTTGCATAAGTATTTGAAGGGCAGCCTACCTTTGTCGAGTCCGCAGTTCCTGGATATTTTCCCTTTGAATCTTCATCAACAGATATGGTATCCGGAAAGCTTCAGAATTGTTAAGGGGATTGTGATTATTGATGATCCTGTTACCTCATATATGAAAGAAGGTGATCTAGAAAAGTTCAAATCTTTGTGTGGTTTGAATAGCCTGAAAATTGATATAGATGAGTCTAGAAAATATCAACATGAGTATCAGAATGGCAGGAAAAATGAGCACAATTTCTGTAAGGACAGTGATGAGGCAGGATATGTTTCCAATGGAAATGGTAATTCAACTGATAGGTTTCAACAAAAGTATAAAAGGAGGTGCCACTCTCGTCCTCCATCAGTTCCAGTAATTCCCCTGGTTGTTACTTCATCAGAAGGCACAAAACATTGTGGAAAAGATGAACCTTCATGGAGTACCTGCAAACCAGAAGGACCGCTAATCATGCCCCATCTGTCTGTTCCTAGAATGGAAGCATCTGTTTCAGATCCATCTATTGTTTTGTCTGGGACGGTCAAGAGAGGGGTTGTAGGACCACCAATTGGTGCTGTGGACATTGGGATTAGCAAGGTGGCATATTATTTCCGGGTATCTCTACCAGGAATCAGGAAGGATTTTTGTCAATTTAGTTGTGAGATCGAACCCAATGGGAAGGTTCATCTTGAAGGCTTCACAAGTGGTGGGAACCCCATAAAGAAACGGTCACGTGTTTTCCAAATGAAAGTGCAGCAAGTGTGCCCTCCTGGACCATTCACACTCTCCTTCAGTCTTCCGGGACCTGTTGATCCAAGGCTCTTTGCACCTAACTTTGGATCAGATGGCATCTTTGAAGGAGTAATTCTAAAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

392

Amino Acids

43.86

Weight (kDa)

8.57

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20870 AT1G20870
fragaria_vesca	FvH4_5g26010
malus_domestica	MD06G1004600.v1.1
prunus_persica	Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1
pyrus_communis	pycom06g00420
rosa_chinensis	RchiOBHm_Chr7g0216621
rosa_laevigata	RLG00000002553 RLG00000002557 RLG00000002558
rosa_multiflora	Rmu_co8318477.1_g000001 Rmu_sc0023624.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243060
rosa_rugosa	Rorug07G0161000 Rorug07G0161000 Rorug07G0161100
rosa_samantha	Rh7AG301100 Rh7BG292600 Rh7CG319700 Rh7DG301700
rosa_wichuraiana	Rw7G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	749
AccB1I	GGYRCC	1 cut(s)	642
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	3 cut(s)	155, 323, 758
AclWI	GGATC	4 cut(s)	410, 803, 1100, 1141
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	367, 1069
AcvI	CACGTG	1 cut(s)	1028
AfaI	GTAC	1 cut(s)	739
AfiI	CCNNNNNNNGG	2 cut(s)	863, 1130
AflIII	ACRYGT	1 cut(s)	1027
AgsI	TTSAA	9 cut(s)	79, 298, 349, 460, 478, 609, 623, 986, 1151
AhdI	GACNNNNNGTC	1 cut(s)	60
AjnI	CCWGG	5 cut(s)	261, 330, 678, 919, 1063
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	2 cut(s)	216, 265
AlwI	GGATC	4 cut(s)	410, 803, 1100, 1141
AlwNI	CAGNNNCTG	1 cut(s)	331
Aor13HI	TCCGGA	1 cut(s)	373
ApeKI	GCWGC	3 cut(s)	10, 303, 1048
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	5 cut(s)	104, 755, 854, 1067, 1097
AsuC2I	CCSGG	2 cut(s)	908, 1095
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	5 cut(s)	104, 755, 854, 1067, 1097
BaeGI	GKGCMC	1 cut(s)	1061
BaeI	ACNNNNGTAYC	2 cut(s)	509, 542
BanI	GGYRCC	1 cut(s)	642
BbrPI	CACGTG	1 cut(s)	1028
BbsI	GAAGAC	1 cut(s)	1082
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	22, 315, 1060
BccI	CCATC	4 cut(s)	667, 780, 820, 1133
BciT130I	CCWGG	5 cut(s)	263, 332, 680, 921, 1065
BciVI	GTATCC	1 cut(s)	381
BcnI	CCSGG	2 cut(s)	908, 1095
BcoDI	GTCTC	2 cut(s)	216, 265
BfaI	CTAG	4 cut(s)	258, 449, 507, 786
BfuAI	ACCTGC	1 cut(s)	749
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	3 cut(s)	11, 304, 1049
BlsI	GCNGC	3 cut(s)	12, 305, 1050
Bme1390I	CCNGG	7 cut(s)	263, 332, 680, 908, 921, 1065, 1095
Bme18I	GGWCC	5 cut(s)	104, 755, 854, 1067, 1097
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmgT120I	GGNCC	5 cut(s)	104, 755, 854, 1067, 1097
BmiI	GGNNCC	5 cut(s)	105, 163, 644, 1007, 1098
BmrFI	CCNGG	7 cut(s)	263, 332, 680, 908, 921, 1065, 1095
BmsI	GCATC	2 cut(s)	806, 1152
BpiI	GAAGAC	1 cut(s)	1082
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpuMI	CCSGG	2 cut(s)	908, 1095
BsaAI	YACGTR	1 cut(s)	1028
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	678, 1109
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	2 cut(s)	863, 1130
Bse1I	ACTGG	1 cut(s)	668
Bse3DI	GCAATG	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	373
BseBI	CCWGG	5 cut(s)	263, 332, 680, 921, 1065
BseDI	CCNNGG	2 cut(s)	678, 1109
BseLI	CCNNNNNNNGG	2 cut(s)	863, 1130
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	3 cut(s)	51, 233, 260
BseNI	ACTGG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	1061
BseXI	GCAGC	3 cut(s)	22, 315, 1060
BsgI	GTGCAG	1 cut(s)	1067
BshNI	GGYRCC	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	3 cut(s)	374, 907, 1094
BslFI	GGGAC	2 cut(s)	844, 1110
BslI	CCNNNNNNNGG	2 cut(s)	863, 1130
BsmAI	GTCTC	2 cut(s)	216, 265
BsmFI	GGGAC	2 cut(s)	844, 1110
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	552, 1061
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	6 cut(s)	415, 445, 808, 957, 1105, 1133
BspACI	CCGC	3 cut(s)	155, 323, 758
BspCNI	CTCAG	3 cut(s)	50, 234, 261
BspEI	TCCGGA	1 cut(s)	373
BspLI	GGNNCC	5 cut(s)	105, 163, 644, 1007, 1098
BspMI	ACCTGC	1 cut(s)	749
BspPI	GGATC	4 cut(s)	410, 803, 1100, 1141
BspT107I	GGYRCC	1 cut(s)	642
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	678, 1109
BssMI	GATC	6 cut(s)	415, 445, 808, 957, 1105, 1133
BssT1I	CCWWGG	1 cut(s)	1109
Bst2UI	CCWGG	5 cut(s)	263, 332, 680, 921, 1065
Bst4CI	ACNGT	4 cut(s)	58, 569, 835, 1023
BstBAI	YACGTR	1 cut(s)	1028
BstDEI	CTNAG	3 cut(s)	37, 242, 269
BstKTI	GATC	6 cut(s)	418, 448, 811, 960, 1108, 1136
BstMAI	GTCTC	2 cut(s)	216, 265
BstMBI	GATC	6 cut(s)	415, 445, 808, 957, 1105, 1133
BstMWI	GCNNNNNNNGC	1 cut(s)	766
BstNI	CCWGG	5 cut(s)	263, 332, 680, 921, 1065
BstSCI	CCNGG	7 cut(s)	261, 330, 678, 906, 919, 1063, 1093
BstSLI	GKGCMC	1 cut(s)	1061
BstV1I	GCAGC	3 cut(s)	22, 315, 1060
BstV2I	GAAGAC	1 cut(s)	1082
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
BsuI	GTATCC	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	574
BveI	ACCTGC	1 cut(s)	749
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr13I	GGNCC	5 cut(s)	104, 755, 854, 1067, 1097
Csp6I	GTAC	1 cut(s)	738
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	4 cut(s)	88, 521, 732, 766
CviJI	RGCY	6 cut(s)	261, 306, 381, 483, 990, 1114
CviKI_1	RGCY	6 cut(s)	261, 306, 381, 483, 990, 1114
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	3 cut(s)	37, 242, 269
DpnI	GATC	6 cut(s)	417, 447, 810, 959, 1107, 1135
DpnII	GATC	6 cut(s)	415, 445, 808, 957, 1105, 1133
DriI	GACNNNNNGTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	1109
Eco31I	GGTCTC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	112
Eco47I	GGWCC	5 cut(s)	104, 755, 854, 1067, 1097
Eco57I	CTGAAG	2 cut(s)	367, 1069
Eco72I	CACGTG	1 cut(s)	1028
EcoO109I	RGGNCCY	2 cut(s)	104, 1097
EcoRII	CCWGG	5 cut(s)	261, 330, 678, 919, 1063
EcoRV	GATATC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	1109
ErhI	CCWWGG	1 cut(s)	1109
FaeI	CATG	4 cut(s)	91, 524, 735, 769
FaqI	GGGAC	2 cut(s)	844, 1110
FatI	CATG	4 cut(s)	87, 520, 731, 765
FauNDI	CATATG	2 cut(s)	199, 279
Fnu4HI	GCNGC	3 cut(s)	11, 304, 1049
Fsp4HI	GCNGC	3 cut(s)	11, 304, 1049
FspBI	CTAG	4 cut(s)	258, 449, 507, 786
GluI	GCNGC	3 cut(s)	11, 304, 1049
HapII	CCGG	3 cut(s)	374, 907, 1094
Hin1II	CATG	4 cut(s)	91, 524, 735, 769
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	6 cut(s)	176, 223, 319, 349, 503, 924
HpaII	CCGG	3 cut(s)	374, 907, 1094
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	6 cut(s)	270, 386, 531, 697, 808, 1138
Hpy188III	TCNNGA	9 cut(s)	107, 180, 241, 374, 449, 507, 838, 928, 983
Hpy8I	GTNNAC	1 cut(s)	874
HpyCH4III	ACNGT	4 cut(s)	58, 569, 835, 1023
HpyCH4IV	ACGT	1 cut(s)	1027
HpyCH4V	TGCA	5 cut(s)	10, 286, 744, 1048, 1121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	766
HpyF3I	CTNAG	3 cut(s)	37, 242, 269
HpySE526I	ACGT	1 cut(s)	1027
Hsp92II	CATG	4 cut(s)	91, 524, 735, 769
Kpn2I	TCCGGA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	415, 445, 808, 957, 1105, 1133
Lsp1109I	GCAGC	3 cut(s)	22, 315, 1060
LweI	GCATC	2 cut(s)	806, 1152
MaeI	CTAG	4 cut(s)	258, 449, 507, 786
MaeII	ACGT	1 cut(s)	1027
MaeIII	GTNAC	3 cut(s)	421, 685, 1023
MalI	GATC	6 cut(s)	417, 447, 810, 959, 1107, 1135
MboI	GATC	6 cut(s)	415, 445, 808, 957, 1105, 1133
MboII	GAAGA	2 cut(s)	344, 1082
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	2 cut(s)	552, 1061
MlyI	GAGTC	4 cut(s)	185, 232, 328, 512
MmeI	TCCRAC	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	373
MseI	TTAA	2 cut(s)	42, 393
MspI	CCGG	3 cut(s)	374, 907, 1094
MspR9I	CCNGG	7 cut(s)	263, 332, 680, 908, 921, 1065, 1095
MunI	CAATTG	1 cut(s)	861
MvaI	CCWGG	5 cut(s)	263, 332, 680, 921, 1065
MwoI	GCNNNNNNNGC	1 cut(s)	766
NciI	CCSGG	2 cut(s)	908, 1095
NdeI	CATATG	2 cut(s)	199, 279
NdeII	GATC	6 cut(s)	415, 445, 808, 957, 1105, 1133
NlaIII	CATG	4 cut(s)	91, 524, 735, 769
NlaIV	GGNNCC	5 cut(s)	105, 163, 644, 1007, 1098
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	1023
PfeI	GAWTC	2 cut(s)	349, 924
PflMI	CCANNNNNTGG	1 cut(s)	863
PfoI	TCCNGGA	3 cut(s)	330, 1063, 1093
PkrI	GCNGC	3 cut(s)	12, 305, 1050
PleI	GAGTC	4 cut(s)	184, 231, 327, 511
PmaCI	CACGTG	1 cut(s)	1028
PmlI	CACGTG	1 cut(s)	1028
PpsI	GAGTC	4 cut(s)	184, 231, 327, 511
Ppu21I	YACGTR	1 cut(s)	1028
PpuMI	RGGWCCY	2 cut(s)	104, 1097
Psp5II	RGGWCCY	2 cut(s)	104, 1097
Psp6I	CCWGG	5 cut(s)	261, 330, 678, 919, 1063
PspCI	CACGTG	1 cut(s)	1028
PspGI	CCWGG	5 cut(s)	261, 330, 678, 919, 1063
PspN4I	GGNNCC	5 cut(s)	105, 163, 644, 1007, 1098
PspPI	GGNCC	5 cut(s)	104, 755, 854, 1067, 1097
PspPPI	RGGWCCY	2 cut(s)	104, 1097
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	808
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
SaqAI	TTAA	2 cut(s)	42, 393
SatI	GCNGC	3 cut(s)	11, 304, 1049
Sau3AI	GATC	6 cut(s)	415, 445, 808, 957, 1105, 1133
Sau96I	GGNCC	5 cut(s)	104, 755, 854, 1067, 1097
SchI	GAGTC	4 cut(s)	185, 232, 328, 512
ScrFI	CCNGG	7 cut(s)	263, 332, 680, 908, 921, 1065, 1095
SduI	GDGCHC	2 cut(s)	552, 1061
SfaNI	GCATC	2 cut(s)	806, 1152
SinI	GGWCC	5 cut(s)	104, 755, 854, 1067, 1097
SsiI	CCGC	3 cut(s)	155, 323, 758
SspMI	CTAG	4 cut(s)	258, 449, 507, 786
StyD4I	CCNGG	7 cut(s)	261, 330, 678, 906, 919, 1063, 1093
StyI	CCWWGG	1 cut(s)	1109
TaaI	ACNGT	4 cut(s)	58, 569, 835, 1023
TaiI	ACGT	1 cut(s)	1030
TaqI	TCGA	3 cut(s)	179, 317, 960
TfiI	GAWTC	2 cut(s)	349, 924
Tru1I	TTAA	2 cut(s)	42, 393
Tru9I	TTAA	2 cut(s)	42, 393
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	1023
TseI	GCWGC	3 cut(s)	10, 303, 1048
Tsp45I	GTSAC	1 cut(s)	1023
TspDTI	ATGAA	9 cut(s)	73, 186, 344, 449, 681, 720, 738, 968, 1055
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	574
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	5 cut(s)	104, 755, 854, 1067, 1097
XapI	RAATTY	1 cut(s)	79
XbaI	TCTAGA	2 cut(s)	448, 506
XspI	CTAG	4 cut(s)	258, 449, 507, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.