Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008559

Physical Location & Seq

Genomic Coordinates Reverse (-)

31996334 .. 31998844

Gene Structure 2511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGACTTGCAGCAAAAAGATGACCCTCCTAAACCTTTAGTGAAAGCAGCGACTGTGTATCAGCATTTTCTGCTCAATTTCATCGTGGAAAATTACTTGGGTCCTGATATCAAGTTTGATAAGCTGAGATACTCGGCATTTCACAGATTAGCTGAAGGTTCACCTCCGTATGAGTTGAGTGATTTGGGTGCTTCATATGTTAGCGTGTCTCTTTTGGAGAGTTTGTATTACTATATCCTAAGAAATGCTCACCCTAGCTTGGTTCTCAGACCAAATATGTTGCATAAGTATTTAAAGGGCAGCCTACCTTTGTCAAGTTCAGGGGTGAGAAAAGACAGTCGGCAGTTCCCAGATATTTTCCCTTTGAATCTTCATCAACAGATATGGTATCCGGAAAGCTTCAGAATTGTTAAGGGGATTGTAATTATTGATGACCCTGTTACCTCATATATGAAAGAAGATGATCTGGAAAAGTTCAAATCTTTATCTGGTATGAATAACCTGAAAATTGATGTGGATGAATCCAGCAAATATCGACAGGAGTACCAGAATGGTGGGAAAAGTGAACACAATTTCTGCATGGACGGTGATGAGGCAGGATATATTTCCAATGGAAATGGTAATTCATCTGATAGATTCCAACGAAAGTATAAAAGGAGGTGCCTCTCTCATCCTCCATCAGTTCCGGCAGTTTCCCCTGTTGTTACTTCATCAGAAGGCACAAAACATTGTGGAAAAGATGAACCTTCGTGGAATACCTGCAAACCAGAAGGACCTGTTCCCATGCCCCTTCTGTCTGTTCCTAAAATGGAAGCATGTGTTTCAGATCCTTCTATTGTTTTGTCTGGGACGGTCAAGAGAGGGGTTGTTGGACCACCAATTGGTGCTGTGGACATTGGCGTTAGCAAGGTTGCTTATTATTTCCGGGTATCTCTACCAGGAATCAGGAAGGATTTTTGTATGTTTCTCACACTTGCTCATTTCTTTGAAATTTCATGGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.57

Weight (kDa)

8.05

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20870 AT1G20870
fragaria_vesca	FvH4_5g26010
malus_domestica	MD06G1004600.v1.1
prunus_persica	Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1
pyrus_communis	pycom06g00420
rosa_chinensis	RchiOBHm_Chr7g0216621
rosa_laevigata	RLG00000002553 RLG00000002557 RLG00000002558
rosa_multiflora	Rmu_co8318477.1_g000001 Rmu_sc0023624.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243060
rosa_rugosa	Rorug07G0161000 Rorug07G0161000 Rorug07G0161100
rosa_samantha	Rh7AG301100 Rh7BG292600 Rh7CG319700 Rh7DG301700
rosa_wichuraiana	Rw7G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	767
AccB1I	GGYRCC	1 cut(s)	660
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccIII	TCCGGA	1 cut(s)	391
AclWI	GGATC	1 cut(s)	821
AcsI	RAATTY	1 cut(s)	990
AcuI	CTGAAG	2 cut(s)	174, 385
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	259, 881
AgsI	TTSAA	3 cut(s)	367, 478, 989
AjnI	CCWGG	1 cut(s)	937
AluBI	AGCT	4 cut(s)	124, 152, 258, 399
AluI	AGCT	4 cut(s)	124, 152, 258, 399
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	821
AlwNI	CAGNNNCTG	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	391
ApeKI	GCWGC	3 cut(s)	10, 47, 300
ApoI	RAATTY	1 cut(s)	990
AspS9I	GGNCC	3 cut(s)	101, 773, 872
AsuC2I	CCSGG	1 cut(s)	926
AsuHPI	GGTGA	4 cut(s)	153, 242, 337, 599
AvaII	GGWCC	3 cut(s)	101, 773, 872
BaeI	ACNNNNGTAYC	2 cut(s)	527, 560
BanI	GGYRCC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	22, 59, 312
BccI	CCATC	1 cut(s)	685
BciT130I	CCWGG	1 cut(s)	939
BciVI	GTATCC	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	926
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	767
BfuI	GTATCC	1 cut(s)	399
BisI	GCNGC	3 cut(s)	11, 48, 301
BlsI	GCNGC	3 cut(s)	12, 49, 302
Bme1390I	CCNGG	2 cut(s)	926, 939
Bme18I	GGWCC	3 cut(s)	101, 773, 872
BmgT120I	GGNCC	3 cut(s)	101, 773, 872
BmiI	GGNNCC	2 cut(s)	102, 662
BmrFI	CCNGG	2 cut(s)	926, 939
BpuMI	CCSGG	1 cut(s)	926
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 881
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	939
BseGI	GGATG	2 cut(s)	523, 670
BseLI	CCNNNNNNNGG	2 cut(s)	259, 881
BseMII	CTCAG	2 cut(s)	116, 280
BseXI	GCAGC	3 cut(s)	22, 59, 312
BshNI	GGYRCC	1 cut(s)	660
BsiSI	CCGG	3 cut(s)	392, 686, 925
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	2 cut(s)	259, 881
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	862
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	463, 826
BspCNI	CTCAG	2 cut(s)	117, 279
BspEI	TCCGGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	102, 662
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	660
BssMI	GATC	2 cut(s)	463, 826
Bst2UI	CCWGG	1 cut(s)	939
Bst4CI	ACNGT	4 cut(s)	55, 338, 587, 853
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	125, 239, 266
BstF5I	GGATG	2 cut(s)	523, 670
BstKTI	GATC	2 cut(s)	466, 829
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	463, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	939
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	2 cut(s)	924, 937
BstV1I	GCAGC	3 cut(s)	22, 59, 312
BstX2I	RGATCY	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	826
BsuI	GTATCC	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	523, 670
BveI	ACCTGC	1 cut(s)	767
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	101, 773, 872
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	4 cut(s)	580, 784, 816, 996
CviJI	RGCY	5 cut(s)	124, 152, 258, 303, 399
CviKI_1	RGCY	5 cut(s)	124, 152, 258, 303, 399
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	3 cut(s)	125, 239, 266
DpnI	GATC	2 cut(s)	465, 828
DpnII	GATC	2 cut(s)	463, 826
DraI	TTTAAA	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	3 cut(s)	101, 773, 872
Eco57I	CTGAAG	2 cut(s)	174, 385
EcoO109I	RGGNCCY	2 cut(s)	101, 773
EcoRII	CCWGG	1 cut(s)	937
EcoRV	GATATC	1 cut(s)	109
FaeI	CATG	4 cut(s)	583, 787, 819, 999
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	4 cut(s)	579, 783, 815, 995
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	11, 48, 301
FokI	GGATG	2 cut(s)	530, 657
Fsp4HI	GCNGC	3 cut(s)	11, 48, 301
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	3 cut(s)	11, 48, 301
HapII	CCGG	3 cut(s)	392, 686, 925
Hin1II	CATG	4 cut(s)	583, 787, 819, 999
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	4 cut(s)	367, 521, 636, 942
HpaII	CCGG	3 cut(s)	392, 686, 925
HphI	GGTGA	4 cut(s)	153, 242, 337, 599
Hpy166II	GTNNAC	3 cut(s)	161, 566, 892
Hpy188I	TCNGA	5 cut(s)	269, 404, 631, 715, 826
Hpy188III	TCNNGA	5 cut(s)	104, 392, 467, 856, 946
Hpy8I	GTNNAC	3 cut(s)	161, 566, 892
HpyAV	CCTTC	7 cut(s)	149, 710, 756, 764, 800, 840, 943
HpyCH4III	ACNGT	4 cut(s)	55, 338, 587, 853
HpyCH4V	TGCA	4 cut(s)	10, 283, 579, 762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	3 cut(s)	125, 239, 266
Hsp92II	CATG	4 cut(s)	583, 787, 819, 999
Kpn2I	TCCGGA	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	463, 826
Lsp1109I	GCAGC	3 cut(s)	22, 59, 312
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	439, 703
MalI	GATC	2 cut(s)	465, 828
MboI	GATC	2 cut(s)	463, 826
MboII	GAAGA	2 cut(s)	362, 470
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	1 cut(s)	826
MluCI	AATT	9 cut(s)	76, 91, 405, 423, 507, 571, 622, 879, 990
MmeI	TCCRAC	2 cut(s)	664, 850
MnlI	CCTC	8 cut(s)	36, 174, 454, 586, 651, 674, 684, 854
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	2 cut(s)	293, 411
MspI	CCGG	3 cut(s)	392, 686, 925
MspR9I	CCNGG	2 cut(s)	926, 939
MunI	CAATTG	1 cut(s)	879
MvaI	CCWGG	1 cut(s)	939
MwoI	GCNNNNNNNGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	926
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	463, 826
NlaIII	CATG	4 cut(s)	583, 787, 819, 999
NlaIV	GGNNCC	2 cut(s)	102, 662
NmeAIII	GCCGAG	1 cut(s)	113
NspI	RCATGY	1 cut(s)	819
PfeI	GAWTC	4 cut(s)	367, 521, 636, 942
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	3 cut(s)	12, 49, 302
PpuMI	RGGWCCY	2 cut(s)	101, 773
Psp5II	RGGWCCY	2 cut(s)	101, 773
Psp6I	CCWGG	1 cut(s)	937
PspGI	CCWGG	1 cut(s)	937
PspN4I	GGNNCC	2 cut(s)	102, 662
PspPI	GGNCC	3 cut(s)	101, 773, 872
PspPPI	RGGWCCY	2 cut(s)	101, 773
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	826
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	293, 411
SatI	GCNGC	3 cut(s)	11, 48, 301
Sau3AI	GATC	2 cut(s)	463, 826
Sau96I	GGNCC	3 cut(s)	101, 773, 872
ScrFI	CCNGG	2 cut(s)	926, 939
SinI	GGWCC	3 cut(s)	101, 773, 872
Sse9I	AATT	9 cut(s)	76, 91, 405, 423, 507, 571, 622, 879, 990
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	924, 937
TaaI	ACNGT	4 cut(s)	55, 338, 587, 853
TaqI	TCGA	1 cut(s)	535
TasI	AATT	9 cut(s)	76, 91, 405, 423, 507, 571, 622, 879, 990
TfiI	GAWTC	4 cut(s)	367, 521, 636, 942
Tru1I	TTAA	2 cut(s)	293, 411
Tru9I	TTAA	2 cut(s)	293, 411
TseI	GCWGC	3 cut(s)	10, 47, 300
TspGWI	ACGGA	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	881
VpaK11BI	GGWCC	3 cut(s)	101, 773, 872
XapI	RAATTY	1 cut(s)	990
XceI	RCATGY	1 cut(s)	819
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.