Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008559

Physical Location & Seq

Genomic Coordinates Forward (+)

36271738 .. 36273230

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGACTTGCAGCAAAAAGATGGCCATCCTAAACCTTCAGTCAAACCAGCGACTGTGCATCAGCATTTTCTGCTGAATTTCATCATGGAAAATTACTTGGGTCCTGATATCAAGTTTGATAAGCTGAGATACTCGGCATTTCACAGATTAGCTGAAGGTTCACCTCCGTATGAGCTGAGTGATTTGGGTGCTTCATATGTTAGCGTGTCTCTTTTGGAAAGTTTATATTACTATATCCTGAGAAATGCACACCCTAGCCTGGTTCTCAGACCAAATACGTTGCATAAGTATTTAAAGGGCAGCCTACCTTTGTCAAGTTCAGGGTCTCTAAGTTCGGCTGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.85

Weight (kDa)

8.86

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20870 AT1G20870
fragaria_vesca	FvH4_5g26010
malus_domestica	MD06G1004600.v1.1
prunus_persica	Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1
pyrus_communis	pycom06g00420
rosa_chinensis	RchiOBHm_Chr7g0216621
rosa_laevigata	RLG00000002553 RLG00000002557 RLG00000002558
rosa_multiflora	Rmu_co8318477.1_g000001 Rmu_sc0023624.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243060
rosa_rugosa	Rorug07G0161000 Rorug07G0161000 Rorug07G0161100
rosa_samantha	Rh7AG301100 Rh7BG292600 Rh7CG319700 Rh7DG301700
rosa_wichuraiana	Rw7G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	2 cut(s)	21, 174
AfiI	CCNNNNNNNGG	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	124, 152, 175
AluI	AGCT	3 cut(s)	124, 152, 175
Alw26I	GTCTC	2 cut(s)	213, 330
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	10, 300
ApoI	RAATTY	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	22, 312
BccI	CCATC	2 cut(s)	14, 33
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	213, 330
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	11, 301
BlsI	GCNGC	2 cut(s)	12, 302
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	67
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	4 cut(s)	116, 167, 230, 280
BseXI	GCAGC	2 cut(s)	22, 312
BshFI	GGCC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	213, 330
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	4 cut(s)	117, 168, 231, 279
BspLI	GGNNCC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstDEI	CTNAG	5 cut(s)	125, 176, 239, 266, 329
BstF5I	GGATG	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	213, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	22, 312
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	101
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	7 cut(s)	24, 124, 152, 175, 258, 303, 338
CviKI_1	RGCY	7 cut(s)	24, 124, 152, 175, 258, 303, 338
DdeI	CTNAG	5 cut(s)	125, 176, 239, 266, 329
DraI	TTTAAA	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	21, 174
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	109
FaeI	CATG	1 cut(s)	88
FaiI	YATR	7 cut(s)	86, 171, 196, 198, 226, 234, 285
FatI	CATG	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	11, 301
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	11, 301
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	11, 301
HaeIII	GGCC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	2 cut(s)	104, 238
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	45, 149
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	4 cut(s)	10, 58, 248, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	5 cut(s)	125, 176, 239, 266, 329
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	60, 117, 245, 251, 272, 306, 324
Lsp1109I	GCAGC	2 cut(s)	22, 312
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	3 cut(s)	76, 91, 343
MluNI	TGGCCA	1 cut(s)	24
MnlI	CCTC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeI	CATATG	1 cut(s)	196
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	12, 302
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	101
PspPPI	RGGWCCY	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	11, 301
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	8 cut(s)	37, 126, 154, 160, 166, 177, 281, 310
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	3 cut(s)	76, 91, 343
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	281
TasI	AATT	3 cut(s)	76, 91, 343
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseI	GCWGC	2 cut(s)	10, 300
TspDTI	ATGAA	2 cut(s)	70, 183
TspGWI	ACGGA	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.