Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008559

Physical Location & Seq

Genomic Coordinates Reverse (-)

12825407 .. 12827800

Gene Structure 2394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0161000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAACTGGTCTTACTTCAATTGTTACAGGTCACAAGAGCCTCAAGTGGTATTGGCGTAGAGACAGCGCGTGTTCTTGCATTGCACGGTGTTCATGTAATAATGGCAGTAAGGAATATAGATGCTGGTACCAATGTTAAAGAAGCAATCCTTAAAGAAATCCCCAGTGCTAAGATTGATGTCATGGAGTTAGATCTCAGCTCATTGGCATCCGTAAGAAAATTTGCAGCAGAGTATAATTCCAAAGGCCTTCCCTTGAATATCCTTATTAACAATGCAGGGGTCATGGCAGATAAATTCAAGCTATCTCAAGACAACATAGAACTCGATTTTGCAACTAACCATTTAGGTCATTTTCTTCTCACAAATCTTCTGTTAGATAACATGAAACACACATCAAGAAAAAGCAGCATAGAGGGGAGAATTGTTAATGTATCATCATTTGGCCATAGATATATATACCGTGAAGGAATTCGTTTTGATAGTATTAATGACGAATCAAGGTACAACAAATCTGTTGCTTATGCAGAATCCAAGCTCGCCAACATATTGCATGCTAATGAGCTTACAAGGCGCCTCAAGGAAGAAAGGGTTGAGATAACTGCTAATTCTCTTCATCCTGGAATAATTCGCACCAATATTATGCATAATGATATCGGTGTAAAGTGTGTTCTTAAGGTGCTCAGGATACTTTCTTTGAGCAAAACTATTCAGCAGGGAGCAGCAACCACATGCTTTTTGGCACTGAATCCACAAGTTAAGGGAGTAAGCGGTGAATACTTTGCGGATTGTAACATTACCAAACCGATATCTCAGGCAAATGATGCAGATTTGGCTAAGAGACTCTGGGATTTTAGCTTGAGTTTGACCAATCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.48

Weight (kDa)

9.03

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	11 - 217	1.5e-25	short chain dehydrogenase
KR	PF08659	14 - 138	9.7e-06	KR domain
adh_short_C2	PF13561	15 - 259	1.1e-15	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20870 AT1G20870
fragaria_vesca	FvH4_5g26010
malus_domestica	MD06G1004600.v1.1
prunus_persica	Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1
pyrus_communis	pycom06g00420
rosa_chinensis	RchiOBHm_Chr7g0216621
rosa_laevigata	RLG00000002553 RLG00000002557 RLG00000002558
rosa_multiflora	Rmu_co8318477.1_g000001 Rmu_sc0023624.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243060
rosa_rugosa	Rorug07G0161000 Rorug07G0161000 Rorug07G0161100
rosa_samantha	Rh7AG301100 Rh7BG292600 Rh7CG319700 Rh7DG301700
rosa_wichuraiana	Rw7G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	2 cut(s)	128, 573
AccII	CGCG	1 cut(s)	70
AciI	CCGC	2 cut(s)	771, 785
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	3 cut(s)	221, 296, 471
AcyI	GRCGYC	1 cut(s)	574
AfaI	GTAC	2 cut(s)	130, 506
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	3 cut(s)	20, 259, 301
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	5 cut(s)	201, 304, 538, 565, 858
AluI	AGCT	5 cut(s)	201, 304, 538, 565, 858
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	2 cut(s)	56, 835
AoxI	GGCC	2 cut(s)	247, 445
ApeKI	GCWGC	3 cut(s)	227, 408, 722
ApoI	RAATTY	3 cut(s)	221, 296, 471
AseI	ATTAAT	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	471
Asp718I	GGTACC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	70, 576
AsuHPI	GGTGA	1 cut(s)	785
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BalI	TGGCCA	1 cut(s)	447
BanI	GGYRCC	2 cut(s)	128, 573
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	3 cut(s)	239, 420, 734
BciT130I	CCWGG	1 cut(s)	621
BciVI	GTATCC	1 cut(s)	681
BcoDI	GTCTC	2 cut(s)	56, 835
BfoI	RGCGCY	1 cut(s)	577
BfrI	CTTAAG	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	681
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	228, 409, 723
BlsI	GCNGC	3 cut(s)	229, 410, 724
Bme1390I	CCNGG	1 cut(s)	621
BmiI	GGNNCC	2 cut(s)	130, 575
BmrFI	CCNGG	1 cut(s)	621
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	112, 218, 814
BmuI	ACTGGG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	5 cut(s)	28, 294, 563, 860, 880
BsaHI	GRCGYC	1 cut(s)	574
Bse1I	ACTGG	2 cut(s)	12, 165
Bse3DI	GCAATG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	621
BseGI	GGATG	2 cut(s)	209, 616
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	3 cut(s)	211, 697, 827
BseNI	ACTGG	2 cut(s)	12, 165
BseXI	GCAGC	3 cut(s)	239, 420, 734
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	249, 447
BshNI	GGYRCC	2 cut(s)	128, 573
BsiHKAI	GWGCWC	1 cut(s)	684
BsmAI	GTCTC	2 cut(s)	56, 835
BsnI	GGCC	2 cut(s)	249, 447
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	2 cut(s)	771, 785
BspANI	GGCC	2 cut(s)	249, 447
BspCNI	CTCAG	3 cut(s)	210, 696, 826
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	130, 575
BspT107I	GGYRCC	2 cut(s)	128, 573
BspTI	CTTAAG	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	12, 165
BssMI	GATC	1 cut(s)	193
BssNI	GRCGYC	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	2 cut(s)	89, 464
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	1 cut(s)	574
BstAFI	CTTAAG	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstC8I	GCNNGC	2 cut(s)	540, 555
BstDEI	CTNAG	5 cut(s)	171, 197, 683, 813, 837
BstF5I	GGATG	2 cut(s)	209, 616
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	2 cut(s)	70, 576
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	56, 835
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	571, 824, 833
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	2 cut(s)	557, 735
BstSCI	CCNGG	1 cut(s)	619
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	239, 420, 734
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	249, 447
BtsCI	GGATG	2 cut(s)	209, 616
BtsIMutI	CAGTG	2 cut(s)	172, 743
Cac8I	GCNNGC	2 cut(s)	540, 555
CfoI	GCGC	2 cut(s)	70, 576
Csp6I	GTAC	2 cut(s)	129, 505
CviAII	CATG	6 cut(s)	95, 184, 286, 385, 554, 732
CviJI	RGCY	9 cut(s)	41, 201, 249, 304, 447, 538, 565, 836, 858
CviKI_1	RGCY	9 cut(s)	41, 201, 249, 304, 447, 538, 565, 836, 858
CviQI	GTAC	2 cut(s)	129, 505
DdeI	CTNAG	5 cut(s)	171, 197, 683, 813, 837
DinI	GGCGCC	1 cut(s)	575
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco147I	AGGCCT	1 cut(s)	249
Eco32I	GATATC	2 cut(s)	655, 810
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	619
EcoRV	GATATC	2 cut(s)	655, 810
EcoT22I	ATGCAT	1 cut(s)	648
EgeI	GGCGCC	1 cut(s)	575
EheI	GGCGCC	1 cut(s)	575
FaeI	CATG	6 cut(s)	98, 187, 289, 388, 557, 735
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	6 cut(s)	94, 183, 285, 384, 553, 731
Fnu4HI	GCNGC	3 cut(s)	228, 409, 723
FokI	GGATG	2 cut(s)	196, 603
Fsp4HI	GCNGC	3 cut(s)	228, 409, 723
GlaI	GCGC	2 cut(s)	69, 575
GluI	GCNGC	3 cut(s)	228, 409, 723
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	249, 447
HhaI	GCGC	2 cut(s)	70, 576
Hin1I	GRCGYC	1 cut(s)	574
Hin1II	CATG	6 cut(s)	98, 187, 289, 388, 557, 735
Hin6I	GCGC	2 cut(s)	68, 574
HinP1I	GCGC	2 cut(s)	68, 574
HinfI	GANTC	4 cut(s)	497, 530, 748, 843
HphI	GGTGA	1 cut(s)	785
Hpy188III	TCNNGA	3 cut(s)	311, 399, 685
HpyAV	CCTTC	2 cut(s)	260, 461
HpyCH4III	ACNGT	2 cut(s)	89, 464
HpyCH4V	TGCA	9 cut(s)	80, 85, 227, 278, 335, 527, 553, 646, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	571, 824, 833
HpyF3I	CTNAG	5 cut(s)	171, 197, 683, 813, 837
Hsp92I	GRCGYC	1 cut(s)	574
Hsp92II	CATG	6 cut(s)	98, 187, 289, 388, 557, 735
HspAI	GCGC	2 cut(s)	68, 574
KasI	GGCGCC	1 cut(s)	573
KpnI	GGTACC	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	3 cut(s)	239, 420, 734
LweI	GCATC	3 cut(s)	112, 218, 814
MaeIII	GTNAC	3 cut(s)	24, 31, 791
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	4 cut(s)	350, 362, 596, 605
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	8 cut(s)	20, 221, 238, 296, 423, 471, 607, 627
MluNI	TGGCCA	1 cut(s)	447
Mly113I	GGCGCC	1 cut(s)	574
MlyI	GAGTC	1 cut(s)	837
MnlI	CCTC	3 cut(s)	52, 409, 587
Mox20I	TGGCCA	1 cut(s)	447
Mph1103I	ATGCAT	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	7 cut(s)	138, 153, 270, 429, 489, 675, 759
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	621
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	3 cut(s)	571, 824, 833
NarI	GGCGCC	1 cut(s)	574
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	6 cut(s)	98, 187, 289, 388, 557, 735
NlaIV	GGNNCC	2 cut(s)	130, 575
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	648
NspI	RCATGY	2 cut(s)	557, 735
PaeI	GCATGC	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	497, 530, 748
PfoI	TCCNGGA	1 cut(s)	619
PkrI	GCNGC	3 cut(s)	229, 410, 724
PleI	GAGTC	1 cut(s)	837
PluTI	GGCGCC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	837
PshBI	ATTAAT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	130, 575
PsrI	GAACNNNNNNTAC	3 cut(s)	29, 654, 686
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	2 cut(s)	130, 506
RsaNI	GTAC	2 cut(s)	129, 505
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	7 cut(s)	138, 153, 270, 429, 489, 675, 759
SatI	GCNGC	3 cut(s)	228, 409, 723
Sau3AI	GATC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	837
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	1 cut(s)	684
SetI	ASST	9 cut(s)	33, 203, 306, 352, 506, 540, 567, 681, 860
SfaNI	GCATC	3 cut(s)	112, 218, 814
SfoI	GGCGCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	6 cut(s)	43, 309, 578, 674, 859, 875
SmoI	CTYRAG	6 cut(s)	43, 309, 578, 674, 859, 875
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	8 cut(s)	20, 221, 238, 296, 423, 471, 607, 627
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	2 cut(s)	771, 785
SspDI	GGCGCC	1 cut(s)	573
SspI	AATATT	1 cut(s)	640
StuI	AGGCCT	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	619
TaaI	ACNGT	2 cut(s)	89, 464
TaqI	TCGA	1 cut(s)	327
TasI	AATT	8 cut(s)	20, 221, 238, 296, 423, 471, 607, 627
TfiI	GAWTC	3 cut(s)	497, 530, 748
Tru1I	TTAA	7 cut(s)	138, 153, 270, 429, 489, 675, 759
Tru9I	TTAA	7 cut(s)	138, 153, 270, 429, 489, 675, 759
TscAI	CASTG	2 cut(s)	172, 750
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	227, 408, 722
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	83, 401, 605
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	172, 750
Vha464I	CTTAAG	1 cut(s)	674
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	3 cut(s)	221, 296, 471
XceI	RCATGY	2 cut(s)	557, 735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.