Rroxscaffold_3G00243060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008559
Physical Location & Seq
Forward (+)
35593810 .. 35596263
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243060.1

Sequence Viewer

Length: 1218 bp
ATGGACTTGCAGCAAAAACATGAACCTCCTAAACCTTCAGTGAAAGCAGCGACTGTGTATCAACATTTTCTGCTGAATTTCATCATGGAAAATTACTTGGGTCCTGATATCAAGTTTGATAAGCTGAGATACTCGGCATTTCACAGATTAGCTGAAGGTTCACCTCCGTATGAGTTGAGTGATTTGGGTGCTTCATATGTTAGCGTGTCTCTTTTGGAGAGTTTATATTACTATATCCTGAGAAATGCTCACCCTAGCCTGGTTCTTAGACCAAATATGTTGCATAAGTATTTAAAGGGCAGCCTGCCTTTGTCAAGTTCAGGGGTGAGAAAAGACAGTCGGCAGTTCCCAGATATTTTCCCTTTGAATCTTCATCAACAGATATGGTATCCGGAAAGCTTCAGAATTGTTAAGGGGATTGTAATTATTGATGACCCTGTTACCTCATATATGAAAGAAGATGATCTGGAAAAGTTCAAATCTTTATCTGGTATGAATAACCTGAAAATTGATATGGATGAATCCAGCAAATATCGACAGGAGTACCAGAATGGTGGGAAAAGTGAGCACAATTTCTGCAAGGACAGTGATGAGGCAGGATATATTTCCAATGGAAATGGTAATTCATCTGATAGATTCCAACAAAAGTATAAAAGGAGGTGCCTCTCTCATCCTCCACCAGTTCCGGCATTTCCCCTTGTTGTTACTTCATCAGAAGGCACAAAATATTGTGGAAAAGATGAACCTTCATGGAATACCTGCAAACCAGAAGGACCTGTGCTCATCCCCCTTCTGTCTGTTCCTAAAATGGAAGCATGTGTTTCAGATCCTTCCATTGTTTTGTCTGGGACGGTCAAGAGAGGGGTTGTTGGACCACCAATTGGTGCTGTGGACATTGGCGTTAGCAAGGTTGCATATTATTTCCGGGTATCTCTACCAGGAATCAGGAAGGATTTTTGTCAATTTAGTTGTGAGATTGAACCCAATGGGAAGGTTCATCTACAAGGCTTCACCAGTGGTGGAAACCCCATAAAGAAACGCTCACGTGTCTTCCAAATGCAATTGCAGCAACTGTGCCCTCCTGGACCATTCACACTCTCCTTCAGTCTTCCGGGACCTGTTGATCCAAGGCTCTTTGCACCTAACTTCGGATCGGATGGCATCTTTGAAGGAGTGATTGTAAAAGGAGTGATATCTGATGCTCAGTTTCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

45.24

Weight (kDa)

8.6

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 881
AccIII TCCGGA 1 cut(s) 391
AclWI GGATC 3 cut(s) 821, 1118, 1159
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 4 cut(s) 21, 174, 385, 1087
AcvI CACGTG 1 cut(s) 1046
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 3 cut(s) 259, 881, 1148
AflIII ACRYGT 1 cut(s) 1045
AgsI TTSAA 4 cut(s) 367, 478, 980, 1169
AjnI CCWGG 3 cut(s) 258, 937, 1081
AluBI AGCT 3 cut(s) 124, 152, 399
AluI AGCT 3 cut(s) 124, 152, 399
Alw21I GWGCWC 2 cut(s) 570, 783
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 3 cut(s) 821, 1118, 1159
AlwNI CAGNNNCTG 2 cut(s) 53, 1072
Aor13HI TCCGGA 1 cut(s) 391
ApeKI GCWGC 4 cut(s) 10, 47, 300, 1066
ApoI RAATTY 1 cut(s) 76
AspS9I GGNCC 5 cut(s) 101, 773, 872, 1085, 1115
AsuC2I CCSGG 2 cut(s) 926, 1113
AsuHPI GGTGA 4 cut(s) 153, 242, 337, 1003
AvaII GGWCC 5 cut(s) 101, 773, 872, 1085, 1115
BaeGI GKGCMC 1 cut(s) 1079
BaeI ACNNNNGTAYC 2 cut(s) 527, 560
BanI GGYRCC 1 cut(s) 660
BbrPI CACGTG 1 cut(s) 1046
BbsI GAAGAC 2 cut(s) 1042, 1100
Bbv12I GWGCWC 2 cut(s) 570, 783
BbvI GCAGC 4 cut(s) 22, 59, 312, 1078
BccI CCATC 1 cut(s) 1151
BciT130I CCWGG 3 cut(s) 260, 939, 1083
BciVI GTATCC 1 cut(s) 399
BcnI CCSGG 2 cut(s) 926, 1113
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 767
BfuI GTATCC 1 cut(s) 399
BisI GCNGC 4 cut(s) 11, 48, 301, 1067
BlsI GCNGC 4 cut(s) 12, 49, 302, 1068
Bme1390I CCNGG 5 cut(s) 260, 926, 939, 1083, 1113
Bme18I GGWCC 5 cut(s) 101, 773, 872, 1085, 1115
BmgT120I GGNCC 5 cut(s) 101, 773, 872, 1085, 1115
BmiI GGNNCC 3 cut(s) 102, 662, 1116
BmrFI CCNGG 5 cut(s) 260, 926, 939, 1083, 1113
BmsI GCATC 2 cut(s) 1170, 1189
BpiI GAAGAC 2 cut(s) 1042, 1100
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BpuMI CCSGG 2 cut(s) 926, 1113
BsaAI YACGTR 1 cut(s) 1046
BsaJI CCNNGG 1 cut(s) 1127
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 1164, 1194
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 881, 1148
Bse1I ACTGG 2 cut(s) 680, 1014
BseAI TCCGGA 1 cut(s) 391
BseBI CCWGG 3 cut(s) 260, 939, 1083
BseDI CCNNGG 1 cut(s) 1127
BseGI GGATG 4 cut(s) 523, 670, 783, 1162
BseLI CCNNNNNNNGG 3 cut(s) 259, 881, 1148
BseMII CTCAG 3 cut(s) 116, 230, 1217
BseNI ACTGG 2 cut(s) 680, 1014
BseSI GKGCMC 1 cut(s) 1079
BseXI GCAGC 4 cut(s) 22, 59, 312, 1078
BshNI GGYRCC 1 cut(s) 660
BsiHKAI GWGCWC 2 cut(s) 570, 783
BsiSI CCGG 4 cut(s) 392, 686, 925, 1112
BslFI GGGAC 2 cut(s) 862, 1128
BslI CCNNNNNNNGG 3 cut(s) 259, 881, 1148
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 2 cut(s) 862, 1128
Bsp1286I GDGCHC 3 cut(s) 570, 783, 1079
Bsp13I TCCGGA 1 cut(s) 391
Bsp143I GATC 4 cut(s) 463, 826, 1123, 1151
BspCNI CTCAG 3 cut(s) 117, 231, 1216
BspEI TCCGGA 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 102, 662, 1116
BspMI ACCTGC 1 cut(s) 767
BspPI GGATC 3 cut(s) 821, 1118, 1159
BspT107I GGYRCC 1 cut(s) 660
BsrI ACTGG 2 cut(s) 680, 1014
BssECI CCNNGG 1 cut(s) 1127
BssMI GATC 4 cut(s) 463, 826, 1123, 1151
BssT1I CCWWGG 1 cut(s) 1127
Bst2UI CCWGG 3 cut(s) 260, 939, 1083
Bst4CI ACNGT 5 cut(s) 55, 338, 587, 853, 1074
BstBAI YACGTR 1 cut(s) 1046
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 4 cut(s) 125, 239, 266, 1203
BstF5I GGATG 4 cut(s) 523, 670, 783, 1162
BstKTI GATC 4 cut(s) 466, 829, 1126, 1154
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 4 cut(s) 463, 826, 1123, 1151
BstMWI GCNNNNNNNGC 1 cut(s) 1066
BstNI CCWGG 3 cut(s) 260, 939, 1083
BstNSI RCATGY 1 cut(s) 819
BstSCI CCNGG 5 cut(s) 258, 924, 937, 1081, 1111
BstSLI GKGCMC 1 cut(s) 1079
BstV1I GCAGC 4 cut(s) 22, 59, 312, 1078
BstV2I GAAGAC 2 cut(s) 1042, 1100
BstX2I RGATCY 1 cut(s) 826
BstXI CCANNNNNNTGG 1 cut(s) 554
BstYI RGATCY 1 cut(s) 826
BsuI GTATCC 1 cut(s) 399
BtsCI GGATG 4 cut(s) 523, 670, 783, 1162
BtsIMutI CAGTG 3 cut(s) 45, 592, 1021
BveI ACCTGC 1 cut(s) 767
Cac8I GCNNGC 1 cut(s) 305
CaiI CAGNNNCTG 2 cut(s) 53, 1072
Cfr13I GGNCC 5 cut(s) 101, 773, 872, 1085, 1115
Csp6I GTAC 1 cut(s) 544
CviAII CATG 4 cut(s) 20, 85, 750, 816
CviJI RGCY 7 cut(s) 124, 152, 258, 303, 399, 1008, 1132
CviKI_1 RGCY 7 cut(s) 124, 152, 258, 303, 399, 1008, 1132
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 4 cut(s) 125, 239, 266, 1203
DpnI GATC 4 cut(s) 465, 828, 1125, 1153
DpnII GATC 4 cut(s) 463, 826, 1123, 1151
DraI TTTAAA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 1127
Eco32I GATATC 2 cut(s) 109, 1194
Eco47I GGWCC 5 cut(s) 101, 773, 872, 1085, 1115
Eco57I CTGAAG 4 cut(s) 21, 174, 385, 1087
Eco72I CACGTG 1 cut(s) 1046
EcoO109I RGGNCCY 3 cut(s) 101, 773, 1115
EcoRII CCWGG 3 cut(s) 258, 937, 1081
EcoRV GATATC 2 cut(s) 109, 1194
EcoT14I CCWWGG 1 cut(s) 1127
ErhI CCWWGG 1 cut(s) 1127
FaeI CATG 4 cut(s) 23, 88, 753, 819
FaqI GGGAC 2 cut(s) 862, 1128
FatI CATG 4 cut(s) 19, 84, 749, 815
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 11, 48, 301, 1067
FokI GGATG 4 cut(s) 530, 657, 770, 1169
Fsp4HI GCNGC 4 cut(s) 11, 48, 301, 1067
FspBI CTAG 1 cut(s) 255
GluI GCNGC 4 cut(s) 11, 48, 301, 1067
HapII CCGG 4 cut(s) 392, 686, 925, 1112
Hin1II CATG 4 cut(s) 23, 88, 753, 819
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 4 cut(s) 367, 521, 636, 942
HpaII CCGG 4 cut(s) 392, 686, 925, 1112
HphI GGTGA 4 cut(s) 153, 242, 337, 1003
Hpy166II GTNNAC 2 cut(s) 161, 892
Hpy188I TCNGA 7 cut(s) 404, 631, 715, 826, 1151, 1156, 1198
Hpy188III TCNNGA 7 cut(s) 104, 238, 392, 467, 856, 946, 1215
Hpy8I GTNNAC 2 cut(s) 161, 892
HpyCH4III ACNGT 5 cut(s) 55, 338, 587, 853, 1074
HpyCH4IV ACGT 1 cut(s) 1045
HpyCH4V TGCA 8 cut(s) 10, 283, 579, 762, 914, 1060, 1066, 1139
HpyF10VI GCNNNNNNNGC 1 cut(s) 1066
HpyF3I CTNAG 4 cut(s) 125, 239, 266, 1203
HpySE526I ACGT 1 cut(s) 1045
Hsp92II CATG 4 cut(s) 23, 88, 753, 819
Kpn2I TCCGGA 1 cut(s) 391
Kzo9I GATC 4 cut(s) 463, 826, 1123, 1151
Lsp1109I GCAGC 4 cut(s) 22, 59, 312, 1078
LweI GCATC 2 cut(s) 1170, 1189
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 1045
MaeIII GTNAC 2 cut(s) 439, 703
MalI GATC 4 cut(s) 465, 828, 1125, 1153
MboI GATC 4 cut(s) 463, 826, 1123, 1151
MboII GAAGA 4 cut(s) 362, 470, 1042, 1100
MfeI CAATTG 2 cut(s) 879, 1061
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 3 cut(s) 570, 783, 1079
MmeI TCCRAC 2 cut(s) 664, 850
MnlI CCTC 9 cut(s) 36, 174, 454, 586, 651, 674, 684, 854, 1089
MroI TCCGGA 1 cut(s) 391
MseI TTAA 2 cut(s) 293, 411
MspI CCGG 4 cut(s) 392, 686, 925, 1112
MspR9I CCNGG 5 cut(s) 260, 926, 939, 1083, 1113
MunI CAATTG 2 cut(s) 879, 1061
MvaI CCWGG 3 cut(s) 260, 939, 1083
MwoI GCNNNNNNNGC 1 cut(s) 1066
NciI CCSGG 2 cut(s) 926, 1113
NdeI CATATG 1 cut(s) 196
NdeII GATC 4 cut(s) 463, 826, 1123, 1151
NlaIII CATG 4 cut(s) 23, 88, 753, 819
NlaIV GGNNCC 3 cut(s) 102, 662, 1116
NmeAIII GCCGAG 1 cut(s) 113
NspI RCATGY 1 cut(s) 819
PfeI GAWTC 4 cut(s) 367, 521, 636, 942
PflMI CCANNNNNTGG 1 cut(s) 881
PfoI TCCNGGA 2 cut(s) 1081, 1111
PkrI GCNGC 4 cut(s) 12, 49, 302, 1068
PmaCI CACGTG 1 cut(s) 1046
PmlI CACGTG 1 cut(s) 1046
Ppu21I YACGTR 1 cut(s) 1046
PpuMI RGGWCCY 3 cut(s) 101, 773, 1115
Psp5II RGGWCCY 3 cut(s) 101, 773, 1115
Psp6I CCWGG 3 cut(s) 258, 937, 1081
PspCI CACGTG 1 cut(s) 1046
PspGI CCWGG 3 cut(s) 258, 937, 1081
PspN4I GGNNCC 3 cut(s) 102, 662, 1116
PspPI GGNCC 5 cut(s) 101, 773, 872, 1085, 1115
PspPPI RGGWCCY 3 cut(s) 101, 773, 1115
PstNI CAGNNNCTG 2 cut(s) 53, 1072
PsuI RGATCY 1 cut(s) 826
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SaqAI TTAA 2 cut(s) 293, 411
SatI GCNGC 4 cut(s) 11, 48, 301, 1067
Sau3AI GATC 4 cut(s) 463, 826, 1123, 1151
Sau96I GGNCC 5 cut(s) 101, 773, 872, 1085, 1115
ScrFI CCNGG 5 cut(s) 260, 926, 939, 1083, 1113
SduI GDGCHC 3 cut(s) 570, 783, 1079
SfaNI GCATC 2 cut(s) 1170, 1189
SinI GGWCC 5 cut(s) 101, 773, 872, 1085, 1115
SspI AATATT 1 cut(s) 728
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 5 cut(s) 258, 924, 937, 1081, 1111
StyI CCWWGG 1 cut(s) 1127
TaaI ACNGT 5 cut(s) 55, 338, 587, 853, 1074
TaiI ACGT 1 cut(s) 1048
TaqI TCGA 1 cut(s) 535
TfiI GAWTC 4 cut(s) 367, 521, 636, 942
Tru1I TTAA 2 cut(s) 293, 411
Tru9I TTAA 2 cut(s) 293, 411
TscAI CASTG 3 cut(s) 45, 592, 1021
TseI GCWGC 4 cut(s) 10, 47, 300, 1066
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 45, 592, 1021
Van91I CCANNNNNTGG 1 cut(s) 881
VpaK11BI GGWCC 5 cut(s) 101, 773, 872, 1085, 1115
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 819
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.