Rh7AG301100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008559
Physical Location & Seq
Reverse (-)
33034988 .. 33039244
4257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG301100.1

Sequence Viewer

Length: 1005 bp
ATGGACTTGCAGCAAAAAGATGACCCTCCTAAACCTTCAGTGAAAGCAGCGACTGTGTATCAGCATTTTCTGCTGAATTTCATCATGGAAAATTACTTGGGTCCTGATATCAAGTTTGATAAGCTGAGATACTCGGCATTTCACAGATTAGCTGAAGGTTCACCTCCGTATGAGTTGAGTGATTTGGGTGCTTCATATGTTAGCGTGTCTCTTTTGGAGAGTTTGTATTACTATATCCTGAGAAATGCTCACCCTAGCTTGGTTCTCAGACCAAATATGTTGCGTAAGTATTTAAAGGGCAGCCTACCTTTGTCAAGTTCAGGGGTGAGAAAAGACAGTCGGCAGTTCCCAGATATTTTCCCTTTGAATCTTCATCAACAGATATGGTATCCGGAAAGCTTCAGAATTGTTAAGGGGATTGTAATTATTGATGACCCTGTTACCTCATATATGAAAGAAGATGATCTGGAAAAGTTCAAATCTTTGTCTGGTATGAATAACCTGAAAATTGATGTGGATGAATCCAGCAAATATCGACAGGAGTACCAGAATGGTGGGAAAAGTGAGCACAATTTCTGCATGGACAGTGATGAGGCAGGATATATTTCCAATGGAAATGGTAATTCATCTGATAGATTCCAACGAAAGTATAAAAGGAGGTGCCTCTCTCATCCTCCATCAGTTCCGGCATTTTCCCCTGTTGTTACTTCATCAGAAGGCACAAAACATTGTGGAAAAGATGAACCTTCATGGAATACCTGCAAACCAGAAGGACCTGTTCCCATGCCGCTTCTGTCTGTTCCTAAAATGGAAGCATGTGTTTCAGATCCTTCTATTGTTTTGTCTGGGACGGTCAAGAGAGGGGTTGTTGGACCACCAATTGGTGCTGTGGACATTGGCGTTAGCAAGGTTGCATATTATTTCCGGGTATCTCTACCAGGAATCAGGAAGGATTTTTGTATGTTTCTCACACTTGCTCATTTCTTTGAAATTTCATGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

37.67

Weight (kDa)

8.33

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 881
AccIII TCCGGA 1 cut(s) 391
AciI CCGC 1 cut(s) 788
AclWI GGATC 1 cut(s) 821
AcsI RAATTY 2 cut(s) 76, 990
AcuI CTGAAG 3 cut(s) 21, 174, 385
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 2 cut(s) 259, 881
AgsI TTSAA 3 cut(s) 367, 478, 989
AjnI CCWGG 1 cut(s) 937
AluBI AGCT 4 cut(s) 124, 152, 258, 399
AluI AGCT 4 cut(s) 124, 152, 258, 399
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 1 cut(s) 821
AlwNI CAGNNNCTG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 391
ApeKI GCWGC 3 cut(s) 10, 47, 300
ApoI RAATTY 2 cut(s) 76, 990
AspS9I GGNCC 3 cut(s) 101, 773, 872
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 3 cut(s) 153, 242, 337
AvaII GGWCC 3 cut(s) 101, 773, 872
BaeI ACNNNNGTAYC 2 cut(s) 527, 560
BanI GGYRCC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 3 cut(s) 22, 59, 312
BccI CCATC 1 cut(s) 685
BciT130I CCWGG 1 cut(s) 939
BciVI GTATCC 1 cut(s) 399
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 767
BfuI GTATCC 1 cut(s) 399
BisI GCNGC 4 cut(s) 11, 48, 301, 788
BlsI GCNGC 4 cut(s) 12, 49, 302, 789
Bme1390I CCNGG 2 cut(s) 926, 939
Bme18I GGWCC 3 cut(s) 101, 773, 872
BmgT120I GGNCC 3 cut(s) 101, 773, 872
BmiI GGNNCC 2 cut(s) 102, 662
BmrFI CCNGG 2 cut(s) 926, 939
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BpuMI CCSGG 1 cut(s) 926
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 881
BseAI TCCGGA 1 cut(s) 391
BseBI CCWGG 1 cut(s) 939
BseGI GGATG 2 cut(s) 523, 670
BseLI CCNNNNNNNGG 2 cut(s) 259, 881
BseMII CTCAG 3 cut(s) 116, 230, 280
BseXI GCAGC 3 cut(s) 22, 59, 312
BshNI GGYRCC 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 3 cut(s) 392, 686, 925
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 2 cut(s) 259, 881
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 862
Bsp1286I GDGCHC 1 cut(s) 570
Bsp13I TCCGGA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 463, 826
BspACI CCGC 1 cut(s) 788
BspCNI CTCAG 3 cut(s) 117, 231, 279
BspEI TCCGGA 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 102, 662
BspMI ACCTGC 1 cut(s) 767
BspPI GGATC 1 cut(s) 821
BspT107I GGYRCC 1 cut(s) 660
BssMI GATC 2 cut(s) 463, 826
Bst2UI CCWGG 1 cut(s) 939
Bst4CI ACNGT 4 cut(s) 55, 338, 587, 853
BstAPI GCANNNNNTGC 1 cut(s) 70
BstDEI CTNAG 3 cut(s) 125, 239, 266
BstF5I GGATG 2 cut(s) 523, 670
BstKTI GATC 2 cut(s) 466, 829
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 463, 826
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 939
BstNSI RCATGY 1 cut(s) 819
BstSCI CCNGG 2 cut(s) 924, 937
BstV1I GCAGC 3 cut(s) 22, 59, 312
BstX2I RGATCY 1 cut(s) 826
BstXI CCANNNNNNTGG 1 cut(s) 554
BstYI RGATCY 1 cut(s) 826
BsuI GTATCC 1 cut(s) 399
BtsCI GGATG 2 cut(s) 523, 670
BtsIMutI CAGTG 2 cut(s) 45, 592
BveI ACCTGC 1 cut(s) 767
CaiI CAGNNNCTG 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 101, 773, 872
Csp6I GTAC 1 cut(s) 544
CviAII CATG 6 cut(s) 85, 580, 750, 784, 816, 996
CviJI RGCY 5 cut(s) 124, 152, 258, 303, 399
CviKI_1 RGCY 5 cut(s) 124, 152, 258, 303, 399
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 3 cut(s) 125, 239, 266
DpnI GATC 2 cut(s) 465, 828
DpnII GATC 2 cut(s) 463, 826
DraI TTTAAA 1 cut(s) 294
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 3 cut(s) 101, 773, 872
Eco57I CTGAAG 3 cut(s) 21, 174, 385
EcoO109I RGGNCCY 2 cut(s) 101, 773
EcoRII CCWGG 1 cut(s) 937
EcoRV GATATC 1 cut(s) 109
FaeI CATG 6 cut(s) 88, 583, 753, 787, 819, 999
FaqI GGGAC 1 cut(s) 862
FatI CATG 6 cut(s) 84, 579, 749, 783, 815, 995
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 11, 48, 301, 788
FokI GGATG 2 cut(s) 530, 657
Fsp4HI GCNGC 4 cut(s) 11, 48, 301, 788
FspBI CTAG 1 cut(s) 255
GluI GCNGC 4 cut(s) 11, 48, 301, 788
HapII CCGG 3 cut(s) 392, 686, 925
Hin1II CATG 6 cut(s) 88, 583, 753, 787, 819, 999
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 4 cut(s) 367, 521, 636, 942
HpaII CCGG 3 cut(s) 392, 686, 925
HphI GGTGA 3 cut(s) 153, 242, 337
Hpy166II GTNNAC 2 cut(s) 161, 892
Hpy188I TCNGA 5 cut(s) 269, 404, 631, 715, 826
Hpy188III TCNNGA 6 cut(s) 104, 238, 392, 467, 856, 946
Hpy8I GTNNAC 2 cut(s) 161, 892
HpyAV CCTTC 7 cut(s) 45, 149, 710, 756, 764, 840, 943
HpyCH4III ACNGT 4 cut(s) 55, 338, 587, 853
HpyCH4V TGCA 4 cut(s) 10, 579, 762, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 3 cut(s) 125, 239, 266
Hsp92II CATG 6 cut(s) 88, 583, 753, 787, 819, 999
Kpn2I TCCGGA 1 cut(s) 391
Kzo9I GATC 2 cut(s) 463, 826
Lsp1109I GCAGC 3 cut(s) 22, 59, 312
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 439, 703
MalI GATC 2 cut(s) 465, 828
MboI GATC 2 cut(s) 463, 826
MboII GAAGA 2 cut(s) 362, 470
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 9 cut(s) 76, 91, 405, 423, 507, 571, 622, 879, 990
MmeI TCCRAC 2 cut(s) 664, 850
MnlI CCTC 8 cut(s) 36, 174, 454, 586, 651, 674, 684, 854
MroI TCCGGA 1 cut(s) 391
MseI TTAA 2 cut(s) 293, 411
MspI CCGG 3 cut(s) 392, 686, 925
MspR9I CCNGG 2 cut(s) 926, 939
MunI CAATTG 1 cut(s) 879
MvaI CCWGG 1 cut(s) 939
MwoI GCNNNNNNNGC 1 cut(s) 70
NciI CCSGG 1 cut(s) 926
NdeI CATATG 1 cut(s) 196
NdeII GATC 2 cut(s) 463, 826
NlaIII CATG 6 cut(s) 88, 583, 753, 787, 819, 999
NlaIV GGNNCC 2 cut(s) 102, 662
NmeAIII GCCGAG 1 cut(s) 113
NspI RCATGY 1 cut(s) 819
PfeI GAWTC 4 cut(s) 367, 521, 636, 942
PflMI CCANNNNNTGG 1 cut(s) 881
PkrI GCNGC 4 cut(s) 12, 49, 302, 789
PpuMI RGGWCCY 2 cut(s) 101, 773
Psp5II RGGWCCY 2 cut(s) 101, 773
Psp6I CCWGG 1 cut(s) 937
PspGI CCWGG 1 cut(s) 937
PspN4I GGNNCC 2 cut(s) 102, 662
PspPI GGNCC 3 cut(s) 101, 773, 872
PspPPI RGGWCCY 2 cut(s) 101, 773
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 826
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SaqAI TTAA 2 cut(s) 293, 411
SatI GCNGC 4 cut(s) 11, 48, 301, 788
Sau3AI GATC 2 cut(s) 463, 826
Sau96I GGNCC 3 cut(s) 101, 773, 872
ScrFI CCNGG 2 cut(s) 926, 939
SduI GDGCHC 1 cut(s) 570
SinI GGWCC 3 cut(s) 101, 773, 872
Sse9I AATT 9 cut(s) 76, 91, 405, 423, 507, 571, 622, 879, 990
SsiI CCGC 1 cut(s) 788
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 924, 937
TaaI ACNGT 4 cut(s) 55, 338, 587, 853
TaqI TCGA 1 cut(s) 535
TasI AATT 9 cut(s) 76, 91, 405, 423, 507, 571, 622, 879, 990
TauI GCSGC 1 cut(s) 790
TfiI GAWTC 4 cut(s) 367, 521, 636, 942
Tru1I TTAA 2 cut(s) 293, 411
Tru9I TTAA 2 cut(s) 293, 411
TscAI CASTG 2 cut(s) 45, 592
TseI GCWGC 3 cut(s) 10, 47, 300
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 2 cut(s) 45, 592
Van91I CCANNNNNTGG 1 cut(s) 881
VpaK11BI GGWCC 3 cut(s) 101, 773, 872
XapI RAATTY 2 cut(s) 76, 990
XceI RCATGY 1 cut(s) 819
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.