RLG00000002558

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
36273762 .. 36274799
1038 bp
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UTR
Exon/CDS
Intron
RLM00000002558

Sequence Viewer

Length: 594 bp
ATGAAAGAAGATGATCTGGAAAAGTTCAAATCTTTATCTGGTATGAATAACCTGAAAATTGATGTGGATGAATCCAGCAACTATCGACAGGAGTACCAGAATGGTGGGAAAAGTGAGCACAATTTCTGCGAGGACAGTGATGAGGCAGGATATATTTCCAATGGAAATGGTAATACATCTGATAGATTCCAACGAAAGTATAAAAGGAGGTGCCTCTCTCATCCTCCATCAGTTCCGGCATTTTTCCCTGTTGTTACTTCATCAGAAGGCACAAAACATTGTGGAAAAGATGAACCTTCATGGAATACCTGCAAACCAGAAGGACCTGTGCTCATGCCCCTTCTGTCTGTTCCTAAAATGGAAGCATGTGTTTCAGATCCTTCTATTGCTTTGTCTGGGACGGTCAAGAGAGGGGTTGTTGGACCACCAATTGGTGCTGTGGACATTGGCGTTAGCAAGGTTACATATTATTTCCGGGTATCTCTACCAGGAATCAGGAAGGATTTTTGTCAATTTAGTTGTGAGATTGAACCCAATGGGAAGGTTCATCTACAAGGCTTCACCAGTGGTGGAAACCCCATAAAGAAACGCTGA
Functional Annotation

Protein Analysis

198

Amino Acids

21.68

Weight (kDa)

8.12

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 431
AclWI GGATC 1 cut(s) 371
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 2 cut(s) 28, 530
AjnI CCWGG 1 cut(s) 487
Alw21I GWGCWC 2 cut(s) 120, 333
AlwI GGATC 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 323, 422
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 553
AvaII GGWCC 2 cut(s) 323, 422
BaeI ACNNNNGTAYC 2 cut(s) 77, 110
BanI GGYRCC 1 cut(s) 210
Bbv12I GWGCWC 2 cut(s) 120, 333
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 489
BcnI CCSGG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 317
Bme1390I CCNGG 2 cut(s) 476, 489
Bme18I GGWCC 2 cut(s) 323, 422
BmgT120I GGNCC 2 cut(s) 323, 422
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 2 cut(s) 476, 489
BpuMI CCSGG 1 cut(s) 476
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 489
BseGI GGATG 2 cut(s) 73, 220
BseLI CCNNNNNNNGG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 564
BshNI GGYRCC 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 120, 333
BsiSI CCGG 2 cut(s) 236, 475
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 120, 333
Bsp143I GATC 2 cut(s) 13, 376
BspLI GGNNCC 1 cut(s) 212
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 564
BssMI GATC 2 cut(s) 13, 376
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 137, 403
BstF5I GGATG 2 cut(s) 73, 220
BstKTI GATC 2 cut(s) 16, 379
BstMBI GATC 2 cut(s) 13, 376
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 369
BstSCI CCNGG 2 cut(s) 474, 487
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 104
BstYI RGATCY 1 cut(s) 376
BtsCI GGATG 2 cut(s) 73, 220
BtsIMutI CAGTG 2 cut(s) 142, 571
BveI ACCTGC 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 323, 422
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 300, 334, 366
CviJI RGCY 1 cut(s) 558
CviKI_1 RGCY 1 cut(s) 558
CviQI GTAC 1 cut(s) 94
DpnI GATC 2 cut(s) 15, 378
DpnII GATC 2 cut(s) 13, 376
Eco47I GGWCC 2 cut(s) 323, 422
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 487
FaeI CATG 3 cut(s) 303, 337, 369
FaiI YATR 8 cut(s) 44, 153, 201, 301, 335, 367, 466, 581
FaqI GGGAC 1 cut(s) 412
FatI CATG 3 cut(s) 299, 333, 365
FokI GGATG 2 cut(s) 80, 207
HapII CCGG 2 cut(s) 236, 475
Hin1II CATG 3 cut(s) 303, 337, 369
HinfI GANTC 3 cut(s) 71, 186, 492
HpaII CCGG 2 cut(s) 236, 475
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 181, 265, 376
Hpy188III TCNNGA 3 cut(s) 17, 406, 496
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 7 cut(s) 260, 306, 314, 350, 390, 493, 535
HpyCH4III ACNGT 2 cut(s) 137, 403
HpyCH4V TGCA 1 cut(s) 312
Hsp92II CATG 3 cut(s) 303, 337, 369
Kzo9I GATC 2 cut(s) 13, 376
MaeIII GTNAC 2 cut(s) 253, 460
MalI GATC 2 cut(s) 15, 378
MboI GATC 2 cut(s) 13, 376
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 2 cut(s) 120, 333
MluCI AATT 4 cut(s) 57, 121, 429, 512
MmeI TCCRAC 2 cut(s) 214, 400
MnlI CCTC 6 cut(s) 124, 136, 201, 224, 234, 404
MspI CCGG 2 cut(s) 236, 475
MspR9I CCNGG 2 cut(s) 476, 489
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 489
NciI CCSGG 1 cut(s) 476
NdeII GATC 2 cut(s) 13, 376
NlaIII CATG 3 cut(s) 303, 337, 369
NlaIV GGNNCC 1 cut(s) 212
NspI RCATGY 1 cut(s) 369
PfeI GAWTC 3 cut(s) 71, 186, 492
PflMI CCANNNNNTGG 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 323, 422
PspPPI RGGWCCY 1 cut(s) 323
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
Sau3AI GATC 2 cut(s) 13, 376
Sau96I GGNCC 2 cut(s) 323, 422
ScrFI CCNGG 2 cut(s) 476, 489
SduI GDGCHC 2 cut(s) 120, 333
SetI ASST 7 cut(s) 54, 212, 298, 311, 328, 462, 546
SinI GGWCC 2 cut(s) 323, 422
Sse9I AATT 4 cut(s) 57, 121, 429, 512
StyD4I CCNGG 2 cut(s) 474, 487
TaaI ACNGT 2 cut(s) 137, 403
TaqI TCGA 1 cut(s) 85
TasI AATT 4 cut(s) 57, 121, 429, 512
TfiI GAWTC 3 cut(s) 71, 186, 492
TscAI CASTG 2 cut(s) 142, 571
TspDTI ATGAA 7 cut(s) 17, 59, 84, 249, 288, 306, 536
TspRI CASTG 2 cut(s) 142, 571
Van91I CCANNNNNTGG 1 cut(s) 431
VpaK11BI GGWCC 2 cut(s) 323, 422
XceI RCATGY 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.