Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008559

Physical Location & Seq

Genomic Coordinates Forward (+)

417224 .. 418928

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGAAATTACTTGGGTCCTGATGTCAATATTGATAGCCTGAGATACTCAGCATTTCAAAGGATAGTGGAAAGGTTGCCTCCATATATGTCAAGTGATTTGGGGCCATCATATGTCAGTGTGTCTTTTTTGGAGAGTTTATATTACTATATCCTGAGAAATGCTCACCCTAGTCTCATTTTGAGACCAGATATGTTGCATAAGTACTTTAAGGGCAGCCTAACCTTACCAAGTTCAGGGGTTACAAAAGAAAGTTGGCACCAGTTCACAGATCTTTTTCCTTTGGCTCTTCATGAACAGATATGGTACCCAGAGAGCTTCAGAGTTGTTAAGGGGATTGTTTTGATTGATGATCCTGTTACATCATTTATGGAAGAAGATGTTCTTGAAAAGTTCAAATCTTTATCTGGTATAGATGGCCTGAAAATTGATATAGGTCAAACTATACGATATCAACATGAGTACCTGGATGGTGGAGAAAGTAAGTCTAATGGCTTGAATGACGATGGCAAGGAAACAAAGACAGAAAATTTGTCTAATGGAAATGGTAATTCATCAGAAAGGTTTCTGAAAAAGTATAAGAGGAGGTGCGTCTCTCATTCTCCAGCAAAGCCAGCATCTCCCCTAGTTGTTTCTGAATCAAAGCATTATAACAAAGATGGAGCTTCATGGATGAGCAATCCAGATGGCCCTGCCCTGATGCCCCTTATCTCTCTTCCTAATATGGAAGAACCTACTTCTGATTCTTCTATTGTTTTGTCTGGGACTGCCAGGAAAGGGGTAGTTGGACCACCAATTGGTCTAGTGGACATTGGTGTTAGCAAGGTTGCATATTACTTCCGGGTTGCTCTACCAGGGGTCAGGAAGGATTTTTGTCAGTTTAGTTGTGAGATTGAATCTAATGGGAAGGTTCATCTCCAAGGCATCACAAGTGGTGGAAATCCCATAAGGAAACGTTCGCGTGTATTTCAGATGAAGTTGCAGCAATTATGCCCGGCTGGACCATTCACTCTTTCCTTCAGCCTCCCGGGACCTGTTGATCCAAGCCTCTTCGCACCACACTTCGGATCTGATGGCATTTTTGAAGGAGTTATCGTAAAAGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

40.86

Weight (kDa)

6.52

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20870 AT1G20870
fragaria_vesca	FvH4_5g26010
malus_domestica	MD06G1004600.v1.1
prunus_persica	Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1
pyrus_communis	pycom06g00420
rosa_chinensis	RchiOBHm_Chr7g0216621
rosa_laevigata	RLG00000002553 RLG00000002557 RLG00000002558
rosa_multiflora	Rmu_co8318477.1_g000001 Rmu_sc0023624.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243060
rosa_rugosa	Rorug07G0161000 Rorug07G0161000 Rorug07G0161100
rosa_samantha	Rh7AG301100 Rh7BG292600 Rh7CG319700 Rh7DG301700
rosa_wichuraiana	Rw7G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	2 cut(s)	258, 306
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccII	CGCG	1 cut(s)	961
AclI	AACGTT	1 cut(s)	955
AclWI	GGATC	3 cut(s)	347, 1034, 1075
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	2 cut(s)	304, 1003
AfaI	GTAC	3 cut(s)	206, 308, 464
AfiI	CCNNNNNNNGG	4 cut(s)	236, 777, 797, 1064
AgsI	TTSAA	6 cut(s)	59, 389, 397, 499, 896, 1085
AjnI	CCWGG	3 cut(s)	465, 770, 853
AluBI	AGCT	2 cut(s)	318, 665
AluI	AGCT	2 cut(s)	318, 665
Alw26I	GTCTC	3 cut(s)	178, 179, 598
AlwI	GGATC	3 cut(s)	347, 1034, 1075
Ama87I	CYCGRG	1 cut(s)	1027
AoxI	GGCC	3 cut(s)	104, 418, 688
ApeKI	GCWGC	2 cut(s)	216, 982
ApoI	RAATTY	1 cut(s)	529
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
Asp700I	GAANNNNTTC	2 cut(s)	381, 564
Asp718I	GGTACC	1 cut(s)	306
AspS9I	GGNCC	6 cut(s)	17, 104, 689, 788, 1001, 1031
AsuC2I	CCSGG	4 cut(s)	842, 995, 1028, 1029
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	1027
AvaII	GGWCC	4 cut(s)	17, 788, 1001, 1031
BaeI	ACNNNNGTAYC	2 cut(s)	446, 479
BanI	GGYRCC	2 cut(s)	258, 306
BbvI	GCAGC	2 cut(s)	228, 994
BccI	CCATC	7 cut(s)	115, 410, 464, 500, 653, 680, 1067
BciT130I	CCWGG	3 cut(s)	467, 772, 855
BcnI	CCSGG	4 cut(s)	842, 995, 1028, 1029
BcoDI	GTCTC	3 cut(s)	178, 179, 598
BfaI	CTAG	3 cut(s)	171, 626, 803
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	2 cut(s)	217, 983
BlsI	GCNGC	2 cut(s)	218, 984
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	7 cut(s)	467, 772, 842, 855, 995, 1028, 1029
Bme18I	GGWCC	4 cut(s)	17, 788, 1001, 1031
BmeT110I	CYCGRG	1 cut(s)	1027
BmgT120I	GGNCC	6 cut(s)	17, 104, 689, 788, 1001, 1031
BmiI	GGNNCC	5 cut(s)	18, 105, 260, 308, 1032
BmrFI	CCNGG	7 cut(s)	467, 772, 842, 855, 995, 1028, 1029
BmsI	GCATC	3 cut(s)	626, 690, 933
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	1 cut(s)	588
BpuMI	CCSGG	4 cut(s)	842, 995, 1028, 1029
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	854, 919, 1027
BsaXI	ACNNNNNCTCC	2 cut(s)	1080, 1110
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 777, 797, 1064
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	3 cut(s)	467, 772, 855
BseDI	CCNNGG	3 cut(s)	854, 919, 1027
BseGI	GGATG	2 cut(s)	475, 678
BseLI	CCNNNNNNNGG	4 cut(s)	236, 777, 797, 1064
BseMII	CTCAG	3 cut(s)	32, 63, 146
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	228, 994
Bsh1236I	CGCG	1 cut(s)	961
BshFI	GGCC	3 cut(s)	106, 420, 690
BshNI	GGYRCC	2 cut(s)	258, 306
BsiHKCI	CYCGRG	1 cut(s)	1027
BsiSI	CCGG	3 cut(s)	841, 995, 1028
BslFI	GGGAC	2 cut(s)	778, 1044
BslI	CCNNNNNNNGG	4 cut(s)	236, 777, 797, 1064
BsmAI	GTCTC	3 cut(s)	178, 179, 598
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	2 cut(s)	778, 1044
BsnI	GGCC	3 cut(s)	106, 420, 690
Bso31I	GGTCTC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	1027
Bsp143I	GATC	4 cut(s)	271, 352, 1039, 1067
BspANI	GGCC	3 cut(s)	106, 420, 690
BspCNI	CTCAG	3 cut(s)	33, 62, 147
BspFNI	CGCG	1 cut(s)	961
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	5 cut(s)	18, 105, 260, 308, 1032
BspPI	GGATC	3 cut(s)	347, 1034, 1075
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	2 cut(s)	258, 306
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	3 cut(s)	854, 919, 1027
BssMI	GATC	4 cut(s)	271, 352, 1039, 1067
BssT1I	CCWWGG	1 cut(s)	919
Bst2UI	CCWGG	3 cut(s)	467, 772, 855
Bst6I	CTCTTC	3 cut(s)	294, 720, 1055
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	3 cut(s)	41, 49, 155
BstF5I	GGATG	2 cut(s)	475, 678
BstFNI	CGCG	1 cut(s)	961
BstKTI	GATC	4 cut(s)	274, 355, 1042, 1070
BstMAI	GTCTC	3 cut(s)	178, 179, 598
BstMBI	GATC	4 cut(s)	271, 352, 1039, 1067
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	3 cut(s)	467, 772, 855
BstSCI	CCNGG	7 cut(s)	465, 770, 840, 853, 993, 1026, 1027
BstUI	CGCG	1 cut(s)	961
BstV1I	GCAGC	2 cut(s)	228, 994
BstX2I	RGATCY	2 cut(s)	271, 1067
BstYI	RGATCY	2 cut(s)	271, 1067
BsuRI	GGCC	3 cut(s)	106, 420, 690
BtsCI	GGATG	2 cut(s)	475, 678
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	615
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	6 cut(s)	17, 104, 689, 788, 1001, 1031
Cfr9I	CCCGGG	1 cut(s)	1027
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	3 cut(s)	205, 307, 463
CviAII	CATG	3 cut(s)	293, 458, 669
CviQI	GTAC	3 cut(s)	205, 307, 463
DdeI	CTNAG	3 cut(s)	41, 49, 155
DpnI	GATC	4 cut(s)	273, 354, 1041, 1069
DpnII	GATC	4 cut(s)	271, 352, 1039, 1067
Eam1104I	CTCTTC	3 cut(s)	294, 720, 1055
EarI	CTCTTC	3 cut(s)	294, 720, 1055
Eco130I	CCWWGG	1 cut(s)	919
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	452
Eco47I	GGWCC	4 cut(s)	17, 788, 1001, 1031
Eco57I	CTGAAG	2 cut(s)	304, 1003
Eco88I	CYCGRG	1 cut(s)	1027
EcoO109I	RGGNCCY	2 cut(s)	17, 1031
EcoRII	CCWGG	3 cut(s)	465, 770, 853
EcoRV	GATATC	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	919
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	3 cut(s)	296, 461, 672
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	2 cut(s)	778, 1044
FatI	CATG	3 cut(s)	292, 457, 668
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	217, 983
FokI	GGATG	2 cut(s)	482, 685
Fsp4HI	GCNGC	2 cut(s)	217, 983
FspBI	CTAG	3 cut(s)	171, 626, 803
GluI	GCNGC	2 cut(s)	217, 983
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	3 cut(s)	106, 420, 690
HapII	CCGG	3 cut(s)	841, 995, 1028
HgaI	GACGC	1 cut(s)	580
Hin1II	CATG	3 cut(s)	296, 461, 672
HinfI	GANTC	3 cut(s)	638, 743, 896
HpaII	CCGG	3 cut(s)	841, 995, 1028
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	267, 808
Hpy188I	TCNGA	8 cut(s)	323, 559, 570, 637, 742, 972, 1067, 1072
Hpy188III	TCNNGA	6 cut(s)	20, 154, 293, 386, 683, 862
Hpy8I	GTNNAC	2 cut(s)	267, 808
HpyAV	CCTTC	4 cut(s)	859, 901, 1027, 1079
HpyCH4IV	ACGT	1 cut(s)	955
HpyCH4V	TGCA	3 cut(s)	199, 830, 982
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	3 cut(s)	41, 49, 155
HpySE526I	ACGT	1 cut(s)	955
Hsp92II	CATG	3 cut(s)	296, 461, 672
KpnI	GGTACC	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	271, 352, 1039, 1067
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	2 cut(s)	228, 994
LweI	GCATC	3 cut(s)	626, 690, 933
MaeI	CTAG	3 cut(s)	171, 626, 803
MaeII	ACGT	1 cut(s)	955
MaeIII	GTNAC	2 cut(s)	241, 358
MalI	GATC	4 cut(s)	273, 354, 1041, 1069
MboI	GATC	4 cut(s)	271, 352, 1039, 1067
MboII	GAAGA	7 cut(s)	281, 386, 389, 707, 738, 740, 1042
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	2 cut(s)	271, 1067
MluCI	AATT	6 cut(s)	7, 426, 529, 550, 795, 986
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	5 cut(s)	90, 576, 579, 1034, 1058
MroXI	GAANNNNTTC	2 cut(s)	381, 564
MseI	TTAA	2 cut(s)	210, 330
MspI	CCGG	3 cut(s)	841, 995, 1028
MspR9I	CCNGG	7 cut(s)	467, 772, 842, 855, 995, 1028, 1029
MunI	CAATTG	1 cut(s)	795
MvaI	CCWGG	3 cut(s)	467, 772, 855
MvnI	CGCG	1 cut(s)	961
MwoI	GCNNNNNNNGC	1 cut(s)	614
NciI	CCSGG	4 cut(s)	842, 995, 1028, 1029
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	4 cut(s)	271, 352, 1039, 1067
NlaIII	CATG	3 cut(s)	296, 461, 672
NlaIV	GGNNCC	5 cut(s)	18, 105, 260, 308, 1032
PagI	TCATGA	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	1101
PdmI	GAANNNNTTC	2 cut(s)	381, 564
PfeI	GAWTC	3 cut(s)	638, 743, 896
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	2 cut(s)	218, 984
PpuMI	RGGWCCY	2 cut(s)	17, 1031
PsiI	TTATAA	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	955
Psp5II	RGGWCCY	2 cut(s)	17, 1031
Psp6I	CCWGG	3 cut(s)	465, 770, 853
PspGI	CCWGG	3 cut(s)	465, 770, 853
PspN4I	GGNNCC	5 cut(s)	18, 105, 260, 308, 1032
PspPI	GGNCC	6 cut(s)	17, 104, 689, 788, 1001, 1031
PspPPI	RGGWCCY	2 cut(s)	17, 1031
PsuI	RGATCY	2 cut(s)	271, 1067
RsaI	GTAC	3 cut(s)	206, 308, 464
RsaNI	GTAC	3 cut(s)	205, 307, 463
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	210, 330
SatI	GCNGC	2 cut(s)	217, 983
Sau3AI	GATC	4 cut(s)	271, 352, 1039, 1067
Sau96I	GGNCC	6 cut(s)	17, 104, 689, 788, 1001, 1031
ScaI	AGTACT	1 cut(s)	206
ScrFI	CCNGG	7 cut(s)	467, 772, 842, 855, 995, 1028, 1029
SfaNI	GCATC	3 cut(s)	626, 690, 933
SinI	GGWCC	4 cut(s)	17, 788, 1001, 1031
SmaI	CCCGGG	1 cut(s)	1029
Sse9I	AATT	6 cut(s)	7, 426, 529, 550, 795, 986
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	3 cut(s)	171, 626, 803
StyD4I	CCNGG	7 cut(s)	465, 770, 840, 853, 993, 1026, 1027
StyI	CCWWGG	1 cut(s)	919
TaiI	ACGT	1 cut(s)	958
TasI	AATT	6 cut(s)	7, 426, 529, 550, 795, 986
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	638, 743, 896
Tru1I	TTAA	2 cut(s)	210, 330
Tru9I	TTAA	2 cut(s)	210, 330
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	2 cut(s)	216, 982
TspDTI	ATGAA	6 cut(s)	281, 309, 543, 657, 902, 989
TspMI	CCCGGG	1 cut(s)	1027
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	797
VpaK11BI	GGWCC	4 cut(s)	17, 788, 1001, 1031
XapI	RAATTY	1 cut(s)	529
XmaI	CCCGGG	1 cut(s)	1027
XmnI	GAANNNNTTC	2 cut(s)	381, 564
XspI	CTAG	3 cut(s)	171, 626, 803
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.