Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008559

Physical Location & Seq

Genomic Coordinates Forward (+)

687277 .. 690448

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G005900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAAGATGACCCTCCTAAAATGTCCGTCAATCCATCGTTTGCCGACCAGCTTTTTCTACTGAACTTCGTAATGGGAAATTATTTGGGCCCTGATGTCACGTTTGATAACCTCGAATGTTCAGCATTTCAAAGGATAGCTGAAGGTTCACCTCCGTATATGTCAAGTTATTTGGGGCCTTCTTATGTTAGTGTGTCTCTTTTGGAGGGTTTATATTACTATCTCTTGAGAAATGTTCACCCTAGTCTCATTTTGAGACCAGAAATGTTGCATAAGTATTTAAAGGGCAGCCTACCTTTGCCAAATTCAGGGCTGACGAAAGACAGTTGGCAGTTCACAAATTTTTTCCCTTTGGATCTTCATGAACAGATATGGTACCCAGAAAGCTTCAGAATTGTTAAGGGGATTCTTTTTATTGATGGTCCTGTTACATCATGTATGAAAGAGGACGATCTGGAAAAGTTCAAATCTTTATCAGGTATAAATAACATGAAAATTGATATAGATGAAGCCATACGATATCAACACAAGTACCTGGATAATGGGGAAAGTAAGACGAATTGCTTGAATGATGATTGCAATTTCACAAAGACAGAATTTTTTTCCAATGGAAATGGAAATTGGTCGGAAAGATTTCAGCAAAAATATAAGAGAAGGTGCTTCTCTCATTCTCCATCAAAGCCAGCATTTCCCCAAGTTGTTACTACAAAACATTTAAGCAAATATGGAGCTTCATGGAAGACCTGCAAACCAGATGGACCTGTGTTCATGCCCCTTATCTCTGTTCCTAATTTGGAAGAATGTACTTCAGATTCTTCTGTTGTTTTGTCTGGGACTGCCAGGAAAGGGGTAGTTGGGCCACCTGTTGGTGTTGTGGACATTGGTGTTAGCAAGGCTGCATATTACTTCCGGGTTGCTCTACCAGGGGTCAGGAAGGATTTTTGTCAATTCAATTGTGAGATTGAATCTAATGGCAAGATTCATCTCCAAGGCGTCACAAGTGGTGGAAATCCCATAAGGAAACGTTCGCGTGTATTCCAAATGAAATTGCAGCAATTATGCCCACCCGGACCATTCACGCTCTCGTTCAGCCTTCCAGGACCTGTTGATCCAAGGCTCTTTGCACCAAATTTTGGACCTGATGGCATTTTTGAAGGAGTTATCATAAAAGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

44.01

Weight (kDa)

7.02

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20870 AT1G20870
fragaria_vesca	FvH4_5g26010
malus_domestica	MD06G1004600.v1.1
prunus_persica	Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1
pyrus_communis	pycom06g00420
rosa_chinensis	RchiOBHm_Chr7g0216621
rosa_laevigata	RLG00000002553 RLG00000002557 RLG00000002558
rosa_multiflora	Rmu_co8318477.1_g000001 Rmu_sc0023624.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243060
rosa_rugosa	Rorug07G0161000 Rorug07G0161000 Rorug07G0161100
rosa_samantha	Rh7AG301100 Rh7BG292600 Rh7CG319700 Rh7DG301700
rosa_wichuraiana	Rw7G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	752
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AccB7I	CCANNNNNTGG	2 cut(s)	866, 1133
AccII	CGCG	1 cut(s)	1030
AclI	AACGTT	1 cut(s)	1024
AclWI	GGATC	2 cut(s)	363, 1103
AcsI	RAATTY	4 cut(s)	304, 340, 596, 1129
AcuI	CTGAAG	3 cut(s)	162, 373, 792
AcyI	GRCGYC	1 cut(s)	993
AfaI	GTAC	3 cut(s)	377, 533, 805
AfiI	CCNNNNNNNGG	4 cut(s)	308, 846, 866, 1133
AgsI	TTSAA	6 cut(s)	131, 466, 568, 952, 965, 1154
AjnI	CCWGG	4 cut(s)	534, 839, 922, 1096
AjuI	GAANNNNNNNTTGG	2 cut(s)	604, 636
AluBI	AGCT	4 cut(s)	52, 140, 387, 731
AluI	AGCT	4 cut(s)	52, 140, 387, 731
Alw26I	GTCTC	3 cut(s)	201, 250, 251
AlwI	GGATC	2 cut(s)	363, 1103
AlwNI	CAGNNNCTG	1 cut(s)	1103
AoxI	GGCC	3 cut(s)	88, 176, 857
ApaI	GGGCCC	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	288, 896, 1051
ApoI	RAATTY	4 cut(s)	304, 340, 596, 1129
Asp700I	GAANNNNTTC	1 cut(s)	633
Asp718I	GGTACC	1 cut(s)	375
AspS9I	GGNCC	9 cut(s)	88, 89, 176, 422, 758, 857, 1070, 1100, 1136
AsuC2I	CCSGG	2 cut(s)	911, 1068
AsuHPI	GGTGA	2 cut(s)	141, 230
AvaII	GGWCC	5 cut(s)	422, 758, 1070, 1100, 1136
BaeGI	GKGCMC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	746
BbvI	GCAGC	3 cut(s)	300, 883, 1063
BccI	CCATC	5 cut(s)	43, 413, 682, 749, 1136
BciT130I	CCWGG	4 cut(s)	536, 841, 924, 1098
BcnI	CCSGG	2 cut(s)	911, 1068
BcoDI	GTCTC	3 cut(s)	201, 250, 251
BfaI	CTAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	752
BisI	GCNGC	3 cut(s)	289, 897, 1052
BlsI	GCNGC	3 cut(s)	290, 898, 1053
Bme1390I	CCNGG	6 cut(s)	536, 841, 911, 924, 1068, 1098
Bme18I	GGWCC	5 cut(s)	422, 758, 1070, 1100, 1136
BmgT120I	GGNCC	9 cut(s)	88, 89, 176, 422, 758, 857, 1070, 1100, 1136
BmiI	GGNNCC	3 cut(s)	90, 177, 377
BmrFI	CCNGG	6 cut(s)	536, 841, 911, 924, 1068, 1098
BpiI	GAAGAC	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	247
BpuMI	CCSGG	2 cut(s)	911, 1068
BsaHI	GRCGYC	1 cut(s)	993
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	923, 988, 1112
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 846, 866, 1133
BseBI	CCWGG	4 cut(s)	536, 841, 924, 1098
BseDI	CCNNGG	3 cut(s)	923, 988, 1112
BseLI	CCNNNNNNNGG	4 cut(s)	308, 846, 866, 1133
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	300, 883, 1063
Bsh1236I	CGCG	1 cut(s)	1030
BshFI	GGCC	3 cut(s)	90, 178, 859
BshNI	GGYRCC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	910, 1068
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	4 cut(s)	308, 846, 866, 1133
BsmAI	GTCTC	3 cut(s)	201, 250, 251
BsmFI	GGGAC	1 cut(s)	847
BsnI	GGCC	3 cut(s)	90, 178, 859
Bso31I	GGTCTC	1 cut(s)	250
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	355, 451, 1108
BspANI	GGCC	3 cut(s)	90, 178, 859
BspFNI	CGCG	1 cut(s)	1030
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	90, 177, 377
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	2 cut(s)	363, 1103
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	923, 988, 1112
BssMI	GATC	3 cut(s)	355, 451, 1108
BssNI	GRCGYC	1 cut(s)	993
BssT1I	CCWWGG	2 cut(s)	988, 1112
Bst2UI	CCWGG	4 cut(s)	536, 841, 924, 1098
Bst4CI	ACNGT	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	993
BstC8I	GCNNGC	1 cut(s)	684
BstFNI	CGCG	1 cut(s)	1030
BstKTI	GATC	3 cut(s)	358, 454, 1111
BstMAI	GTCTC	3 cut(s)	201, 250, 251
BstMBI	GATC	3 cut(s)	355, 451, 1108
BstNI	CCWGG	4 cut(s)	536, 841, 924, 1098
BstSCI	CCNGG	6 cut(s)	534, 839, 909, 922, 1066, 1096
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	1030
BstV1I	GCAGC	3 cut(s)	300, 883, 1063
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	90, 178, 859
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	1 cut(s)	684
CaiI	CAGNNNCTG	1 cut(s)	1103
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	9 cut(s)	88, 89, 176, 422, 758, 857, 1070, 1100, 1136
CseI	GACGC	1 cut(s)	982
Csp6I	GTAC	3 cut(s)	376, 532, 804
CviAII	CATG	5 cut(s)	362, 435, 490, 735, 769
CviQI	GTAC	3 cut(s)	376, 532, 804
DpnI	GATC	3 cut(s)	357, 453, 1110
DpnII	GATC	3 cut(s)	355, 451, 1108
DraI	TTTAAA	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	988, 1112
Eco24I	GRGCYC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	521
Eco47I	GGWCC	5 cut(s)	422, 758, 1070, 1100, 1136
Eco57I	CTGAAG	3 cut(s)	162, 373, 792
EcoO109I	RGGNCCY	3 cut(s)	89, 176, 1100
EcoRII	CCWGG	4 cut(s)	534, 839, 922, 1096
EcoRV	GATATC	1 cut(s)	521
EcoT14I	CCWWGG	2 cut(s)	988, 1112
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	2 cut(s)	988, 1112
FaeI	CATG	5 cut(s)	365, 438, 493, 738, 772
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	5 cut(s)	361, 434, 489, 734, 768
Fnu4HI	GCNGC	3 cut(s)	289, 897, 1052
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	289, 897, 1052
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	3 cut(s)	289, 897, 1052
HaeIII	GGCC	3 cut(s)	90, 178, 859
HapII	CCGG	2 cut(s)	910, 1068
HgaI	GACGC	1 cut(s)	982
Hin1I	GRCGYC	1 cut(s)	993
Hin1II	CATG	5 cut(s)	365, 438, 493, 738, 772
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	4 cut(s)	406, 812, 965, 979
HpaII	CCGG	2 cut(s)	910, 1068
HphI	GGTGA	2 cut(s)	141, 230
Hpy166II	GTNNAC	4 cut(s)	149, 238, 336, 877
Hpy188I	TCNGA	3 cut(s)	392, 628, 811
Hpy188III	TCNNGA	4 cut(s)	226, 362, 455, 931
Hpy8I	GTNNAC	4 cut(s)	149, 238, 336, 877
HpyAV	CCTTC	6 cut(s)	137, 189, 648, 928, 1103, 1148
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	101, 1024
HpyCH4V	TGCA	6 cut(s)	271, 579, 747, 899, 1051, 1124
HpySE526I	ACGT	2 cut(s)	101, 1024
Hsp92I	GRCGYC	1 cut(s)	993
Hsp92II	CATG	5 cut(s)	365, 438, 493, 738, 772
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	355, 451, 1108
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	3 cut(s)	300, 883, 1063
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	101, 1024
MaeIII	GTNAC	4 cut(s)	97, 427, 700, 994
MalI	GATC	3 cut(s)	357, 453, 1110
MboI	GATC	3 cut(s)	355, 451, 1108
MboII	GAAGA	5 cut(s)	17, 350, 751, 807, 809
MfeI	CAATTG	1 cut(s)	952
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	5 cut(s)	24, 122, 162, 199, 439
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	3 cut(s)	281, 399, 716
MspI	CCGG	2 cut(s)	910, 1068
MspR9I	CCNGG	6 cut(s)	536, 841, 911, 924, 1068, 1098
MunI	CAATTG	1 cut(s)	952
MvaI	CCWGG	4 cut(s)	536, 841, 924, 1098
MvnI	CGCG	1 cut(s)	1030
NciI	CCSGG	2 cut(s)	911, 1068
NdeII	GATC	3 cut(s)	355, 451, 1108
NlaIII	CATG	5 cut(s)	365, 438, 493, 738, 772
NlaIV	GGNNCC	3 cut(s)	90, 177, 377
NmuCI	GTSAC	2 cut(s)	97, 994
PagI	TCATGA	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	406, 812, 965, 979
PflMI	CCANNNNNTGG	2 cut(s)	866, 1133
PfoI	TCCNGGA	1 cut(s)	1096
PkrI	GCNGC	3 cut(s)	290, 898, 1053
PpuMI	RGGWCCY	1 cut(s)	1100
Psp1406I	AACGTT	1 cut(s)	1024
Psp5II	RGGWCCY	1 cut(s)	1100
Psp6I	CCWGG	4 cut(s)	534, 839, 922, 1096
PspGI	CCWGG	4 cut(s)	534, 839, 922, 1096
PspN4I	GGNNCC	3 cut(s)	90, 177, 377
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	9 cut(s)	88, 89, 176, 422, 758, 857, 1070, 1100, 1136
PspPPI	RGGWCCY	1 cut(s)	1100
PstNI	CAGNNNCTG	1 cut(s)	1103
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	3 cut(s)	377, 533, 805
RsaNI	GTAC	3 cut(s)	376, 532, 804
SaqAI	TTAA	3 cut(s)	281, 399, 716
SatI	GCNGC	3 cut(s)	289, 897, 1052
Sau3AI	GATC	3 cut(s)	355, 451, 1108
Sau96I	GGNCC	9 cut(s)	88, 89, 176, 422, 758, 857, 1070, 1100, 1136
ScrFI	CCNGG	6 cut(s)	536, 841, 911, 924, 1068, 1098
SduI	GDGCHC	1 cut(s)	92
SinI	GGWCC	5 cut(s)	422, 758, 1070, 1100, 1136
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	6 cut(s)	534, 839, 909, 922, 1066, 1096
StyI	CCWWGG	2 cut(s)	988, 1112
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	104, 1027
TaqI	TCGA	1 cut(s)	114
TatI	WGTACW	1 cut(s)	803
TfiI	GAWTC	4 cut(s)	406, 812, 965, 979
Tru1I	TTAA	3 cut(s)	281, 399, 716
Tru9I	TTAA	3 cut(s)	281, 399, 716
TseFI	GTSAC	2 cut(s)	97, 994
TseI	GCWGC	3 cut(s)	288, 896, 1051
Tsp45I	GTSAC	2 cut(s)	97, 994
TspDTI	ATGAA	9 cut(s)	350, 378, 455, 506, 522, 723, 757, 971, 1058
TspGWI	ACGGA	2 cut(s)	16, 144
Van91I	CCANNNNNTGG	2 cut(s)	866, 1133
VpaK11BI	GGWCC	5 cut(s)	422, 758, 1070, 1100, 1136
XapI	RAATTY	4 cut(s)	304, 340, 596, 1129
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.