Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8318477.1

Orthogroup ID

OG0008559

Physical Location & Seq

Genomic Coordinates Reverse (-)

55 .. 907

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8318477.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgccccttctgtctgttcctaaaatggaagcatgtgtttcagatccttctattgttttgtctgggacggtcaagagaggggttgttggacaaccaattggtgctgtggacattggcgttagcaaggttgcatattatttccgggtatctctaccaggaatcaggaaggatttttgtcaatttagttgtgagattgaacccaatgggaaggttcatctacaaggcttcaccagtggtggaaaccccataaagaaacgctcacgtgtcttccaaatgaaattgcagcaactgtgccctcctggaccattcacactctccttcagtcttccgggacctgttgatccaaggctctttgcacctaacttcggatccgatggcatctttgaaggagtaattctaaaagaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.7

Weight (kDa)

9.0

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20870 AT1G20870
fragaria_vesca	FvH4_5g26010
malus_domestica	MD06G1004600.v1.1
prunus_persica	Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1 Prupe.5G005900_v2.0.a1
pyrus_communis	pycom06g00420
rosa_chinensis	RchiOBHm_Chr7g0216621
rosa_laevigata	RLG00000002553 RLG00000002557 RLG00000002558
rosa_multiflora	Rmu_co8318477.1_g000001 Rmu_sc0023624.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243060
rosa_rugosa	Rorug07G0161000 Rorug07G0161000 Rorug07G0161100
rosa_samantha	Rh7AG301100 Rh7BG292600 Rh7CG319700 Rh7DG301700
rosa_wichuraiana	Rw7G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	38, 335, 363, 376
AcuI	CTGAAG	1 cut(s)	304
AcvI	CACGTG	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	197, 386
AjnI	CCWGG	2 cut(s)	154, 298
AlwI	GGATC	4 cut(s)	38, 335, 363, 376
AlwNI	CAGNNNCTG	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	302, 332
AsuC2I	CCSGG	2 cut(s)	143, 330
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	302, 332
BaeGI	GKGCMC	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	368
BbrPI	CACGTG	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	259, 317
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	2 cut(s)	156, 300
BcnI	CCSGG	2 cut(s)	143, 330
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	4 cut(s)	143, 156, 300, 330
Bme18I	GGWCC	2 cut(s)	302, 332
BmgT120I	GGNCC	2 cut(s)	302, 332
BmiI	GGNNCC	2 cut(s)	333, 370
BmrFI	CCNGG	4 cut(s)	143, 156, 300, 330
BmsI	GCATC	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	259, 317
BpuMI	CCSGG	2 cut(s)	143, 330
BsaAI	YACGTR	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	156, 300
BseDI	CCNNGG	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	142, 329
BslFI	GGGAC	2 cut(s)	79, 345
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	79, 345
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	43, 340, 368
BspLI	GGNNCC	2 cut(s)	333, 370
BspPI	GGATC	4 cut(s)	38, 335, 363, 376
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	3 cut(s)	43, 340, 368
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	156, 300
Bst4CI	ACNGT	2 cut(s)	70, 291
BstBAI	YACGTR	1 cut(s)	263
BstKTI	GATC	3 cut(s)	46, 343, 371
BstMBI	GATC	3 cut(s)	43, 340, 368
BstNI	CCWGG	2 cut(s)	156, 300
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	4 cut(s)	141, 154, 298, 328
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	2 cut(s)	259, 317
BstX2I	RGATCY	2 cut(s)	43, 368
BstYI	RGATCY	2 cut(s)	43, 368
BtsIMutI	CAGTG	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	302, 332
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	2 cut(s)	225, 349
CviKI_1	RGCY	2 cut(s)	225, 349
DpnI	GATC	3 cut(s)	45, 342, 370
DpnII	GATC	3 cut(s)	43, 340, 368
Eco130I	CCWWGG	1 cut(s)	344
Eco47I	GGWCC	2 cut(s)	302, 332
Eco57I	CTGAAG	1 cut(s)	304
Eco72I	CACGTG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	154, 298
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	1 cut(s)	36
FaiI	YATR	3 cut(s)	34, 133, 248
FaqI	GGGAC	2 cut(s)	79, 345
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	284
HapII	CCGG	2 cut(s)	142, 329
Hin1II	CATG	1 cut(s)	36
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	142, 329
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	43, 368, 373
Hpy188III	TCNNGA	2 cut(s)	73, 163
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	6 cut(s)	17, 57, 160, 202, 328, 380
HpyCH4III	ACNGT	2 cut(s)	70, 291
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	131, 283, 356
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	43, 340, 368
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	387
MaeII	ACGT	1 cut(s)	262
MalI	GATC	3 cut(s)	45, 342, 370
MboI	GATC	3 cut(s)	43, 340, 368
MboII	GAAGA	2 cut(s)	259, 317
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	2 cut(s)	43, 368
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	4 cut(s)	96, 179, 278, 393
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	71, 306, 397
MspI	CCGG	2 cut(s)	142, 329
MspR9I	CCNGG	4 cut(s)	143, 156, 300, 330
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	156, 300
NciI	CCSGG	2 cut(s)	143, 330
NdeII	GATC	3 cut(s)	43, 340, 368
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	333, 370
NspI	RCATGY	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	159
PfoI	TCCNGGA	2 cut(s)	298, 328
PkrI	GCNGC	1 cut(s)	285
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
Ppu21I	YACGTR	1 cut(s)	263
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	154, 298
PspCI	CACGTG	1 cut(s)	263
PspGI	CCWGG	2 cut(s)	154, 298
PspN4I	GGNNCC	2 cut(s)	333, 370
PspPI	GGNCC	2 cut(s)	302, 332
PspPPI	RGGWCCY	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	43, 368
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	3 cut(s)	43, 340, 368
Sau96I	GGNCC	2 cut(s)	302, 332
ScrFI	CCNGG	4 cut(s)	143, 156, 300, 330
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	5 cut(s)	129, 213, 265, 337, 361
SfaNI	GCATC	1 cut(s)	387
SinI	GGWCC	2 cut(s)	302, 332
Sse9I	AATT	4 cut(s)	96, 179, 278, 393
StyD4I	CCNGG	4 cut(s)	141, 154, 298, 328
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	70, 291
TaiI	ACGT	1 cut(s)	265
TasI	AATT	4 cut(s)	96, 179, 278, 393
TfiI	GAWTC	1 cut(s)	159
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	203, 290
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	302, 332
XceI	RCATGY	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.