FvH4_5g27330
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
18575208 .. 18577727
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27330.t1

Sequence Viewer

Length: 1410 bp
ATGGCAATTGCAGCAACGAGGATGAGCCACGAAGAAGACGAGTCGAACAAGCAGCATCATGAGGTTGAGGTTGATCATGATGAGCATGAGCATGACATGGTGATGCCGGGCTTTCGCTTCCACCCAACTGAAGAAGAACTGATAGAGTTTTACCTTCGCCGTAAGGTGGAGGGCAAGCGCTTCAATGTCGAACTCATTACTTTTCTCGACCTTTATCGCTATGACCCTTGGGAACTTCCAGCTATGGCGGCGATTGGAGAGAAGGAGTGGTTCTTTTATGTTCCGAGAGACAGAAAGTACCGGAACGGCGACAGACCCAACCGCGTGACCACATCTGGATACTGGAAAGCAACCGGAGCCGACCGGATGATTCGAAGCGAGAACTTCCGGTCAATCGGGTTGAAGAAAACCCTAGTTTTCTACTCTGGGAAAGCCCCCAAAGGCATCCGAACTAGCTGGATCATGAACGAGTATCGTTTGCCCCATCATGAAACTGAACGATATCAAAAGGGAGAAATATCCCTTTGCCGAGTTTACAAGAGACCCGGAGTGGAAGACCACCCGTCGCTGCCTCGGTCTCTGCCGTCATCCAGAGCCGCCGCCGCTAATGCTAATGGTGCATCCACATCAAGATCACTACTGCAGGCTCAGTCTTCGTCATCGTCCTCCTTAAACAAGAAGCAGCACAGCATTAACAGTAGTTTGATGGAAAAACTCCAAGCTAATTTTAACTTCAATGGAGGGTCATCCTCACTTGGCCAATCTGTACAACAACTTCATCATCATCATCATCAAGATCAGGTGGCTGCGGATCCAAAGATAAACGAAACTGAAGGAAGCAGCGGGAATTCGGATGTGACAAGCACTCTCGGGGTTGGCCTCCGTAGTAGTGCCACCAATATTCCAATTCATCATCCATCATCGCCACTCGGACTACAACCACATCACCATCACCATGGAGGAGTCTTACACCTCGATGATCATCATGCCGAACAAGAGGGGATCTCCACATTCTTGCAGCAGCATCATCACCACTCAAAGCCGCAAACATTACTGTTCGCCGGATCTTCTGTTTCCGCCACGTCTAATGTGATTGATGATCTTCAAAGACTCTTGAATTACCAACAGCAGCAAGCAGTTTCCAACATTGCCAATCAACAACAAGCTTTACATGTACAACAATACTATGACGCTCATAGTCATAATCATAACCACAACCAGCAACTACCCAGCAACGTAGTTAACCATTTCTCCAGTCCTTTCCCATTGGCACCTCCGCCACCGTCGCAGTCTCAGCTCTCCCCCAACGGACTTCCAGTAACTGCTTTCTCCGACCGCCTTTGGGACTGGAATCCAATCTCAGAGCCAAACCGGGCCCCAGATCAGTACAACACCAATCCATTCAAGTAA

Protein Analysis

470

Amino Acids

53.12

Weight (kDa)

6.75

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 36 - 160 7.2e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1270
AccII CGCG 1 cut(s) 324
AclWI GGATC 5 cut(s) 467, 806, 819, 1010, 1072
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 2 cut(s) 150, 852
AfaI GTAC 4 cut(s) 299, 768, 1176, 1388
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 166, 1342
AflIII ACRYGT 1 cut(s) 1171
AgsI TTSAA 6 cut(s) 184, 403, 736, 1106, 1117, 1405
AhdI GACNNNNNGTC 1 cut(s) 562
AjiI CACGTC 1 cut(s) 1083
AluBI AGCT 5 cut(s) 242, 456, 722, 1166, 1297
AluI AGCT 5 cut(s) 242, 456, 722, 1166, 1297
Alw26I GTCTC 4 cut(s) 282, 535, 582, 1296
AlwI GGATC 5 cut(s) 467, 806, 819, 1010, 1072
AlwNI CAGNNNCTG 1 cut(s) 1322
Ama87I CYCGRG 1 cut(s) 869
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 3 cut(s) 757, 877, 1374
ApaI GGGCCC 1 cut(s) 1378
ApeKI GCWGC 9 cut(s) 11, 52, 568, 682, 806, 840, 1018, 1021, 1129
ApoI RAATTY 1 cut(s) 847
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 1374, 1375
AsuC2I CCSGG 3 cut(s) 108, 546, 1373
AsuHPI GGTGA 4 cut(s) 112, 938, 944, 1022
AsuII TTCGAA 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 869
BaeGI GKGCMC 1 cut(s) 1378
BalI TGGCCA 1 cut(s) 759
BamHI GGATCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 1270
BanII GRGCYC 1 cut(s) 1378
BarI GAAGNNNNNNTAC 2 cut(s) 759, 791
BbsI GAAGAC 3 cut(s) 42, 561, 645
BbvI GCAGC 9 cut(s) 23, 64, 555, 694, 793, 852, 1030, 1033, 1141
BccI CCATC 4 cut(s) 492, 700, 925, 957
BceAI ACGGC 3 cut(s) 144, 322, 568
BciVI GTATCC 1 cut(s) 332
BclI TGATCA 2 cut(s) 73, 979
BcnI CCSGG 3 cut(s) 108, 546, 1373
BcoDI GTCTC 4 cut(s) 282, 535, 582, 1296
BfaI CTAG 2 cut(s) 413, 453
BfmI CTRYAG 1 cut(s) 641
BfoI RGCGCY 1 cut(s) 181
BfuI GTATCC 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 108, 546, 1373
BmeRI GACNNNNNGTC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 869
BmgBI CACGTC 1 cut(s) 1083
BmgT120I GGNCC 2 cut(s) 1374, 1375
BmiI GGNNCC 5 cut(s) 358, 813, 1272, 1376, 1377
BmrFI CCNGG 3 cut(s) 108, 546, 1373
BmsI GCATC 5 cut(s) 64, 93, 453, 629, 1033
BpiI GAAGAC 3 cut(s) 42, 561, 645
BplI GAGNNNNNCTC 2 cut(s) 989, 1021
BpmI CTGGAG 1 cut(s) 1237
Bpu14I TTCGAA 1 cut(s) 373
BpuMI CCSGG 3 cut(s) 108, 546, 1373
BsaBI GATNNNNATC 1 cut(s) 981
BsaI GGTCTC 2 cut(s) 535, 582
BsaJI CCNNGG 3 cut(s) 227, 572, 955
BsaWI WCCGGW 4 cut(s) 300, 353, 363, 387
BsaXI ACNNNNNCTCC 2 cut(s) 1235, 1265
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 1342
Bse1I ACTGG 4 cut(s) 347, 1254, 1316, 1352
Bse3DI GCAATG 1 cut(s) 1146
Bse8I GATNNNNATC 1 cut(s) 981
BseDI CCNNGG 3 cut(s) 227, 572, 955
BseGI GGATG 8 cut(s) 27, 372, 444, 587, 620, 746, 859, 913
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 2 cut(s) 166, 1342
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 3 cut(s) 662, 1307, 1374
BseNI ACTGG 4 cut(s) 347, 1254, 1316, 1352
BseRI GAGGAG 1 cut(s) 975
BseSI GKGCMC 1 cut(s) 1378
BseXI GCAGC 9 cut(s) 23, 64, 555, 694, 793, 852, 1030, 1033, 1141
BseYI CCCAGC 1 cut(s) 1229
Bsh1236I CGCG 1 cut(s) 324
Bsh1285I CGRYCG 2 cut(s) 364, 1336
BshFI GGCC 3 cut(s) 759, 879, 1376
BshNI GGYRCC 1 cut(s) 1270
BsiEI CGRYCG 2 cut(s) 364, 1336
BsiHKCI CYCGRG 1 cut(s) 869
BsiSI CCGG 8 cut(s) 107, 301, 354, 364, 388, 546, 1062, 1372
BslFI GGGAC 1 cut(s) 1358
BslI CCNNNNNNNGG 2 cut(s) 166, 1342
BsmAI GTCTC 4 cut(s) 282, 535, 582, 1296
BsmFI GGGAC 1 cut(s) 1358
BsnI GGCC 3 cut(s) 759, 879, 1376
Bso31I GGTCTC 2 cut(s) 535, 582
BsoBI CYCGRG 1 cut(s) 869
Bsp119I TTCGAA 1 cut(s) 373
Bsp120I GGGCCC 1 cut(s) 1374
Bsp1286I GDGCHC 1 cut(s) 1378
Bsp1407I TGTACA 2 cut(s) 766, 1174
Bsp19I CCATGG 1 cut(s) 955
BspANI GGCC 3 cut(s) 759, 879, 1376
BspCNI CTCAG 3 cut(s) 661, 1306, 1373
BspFNI CGCG 1 cut(s) 324
BspHI TCATGA 4 cut(s) 58, 76, 462, 487
BspLI GGNNCC 5 cut(s) 358, 813, 1272, 1376, 1377
BspMAI CTGCAG 1 cut(s) 645
BspPI GGATC 5 cut(s) 467, 806, 819, 1010, 1072
BspT104I TTCGAA 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 1270
BspTNI GGTCTC 2 cut(s) 535, 582
BsrDI GCAATG 1 cut(s) 1146
BsrGI TGTACA 2 cut(s) 766, 1174
BsrI ACTGG 4 cut(s) 347, 1254, 1316, 1352
BssECI CCNNGG 3 cut(s) 227, 572, 955
BssT1I CCWWGG 2 cut(s) 227, 955
Bst4CI ACNGT 3 cut(s) 698, 1056, 1284
BstAUI TGTACA 2 cut(s) 766, 1174
BstBI TTCGAA 1 cut(s) 373
BstC8I GCNNGC 3 cut(s) 176, 645, 1134
BstDEI CTNAG 3 cut(s) 648, 1293, 1360
BstDSI CCRYGG 1 cut(s) 955
BstF5I GGATG 8 cut(s) 27, 372, 444, 587, 620, 746, 859, 913
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstMAI GTCTC 4 cut(s) 282, 535, 582, 1296
BstMCI CGRYCG 2 cut(s) 364, 1336
BstMWI GCNNNNNNNGC 8 cut(s) 11, 248, 356, 602, 608, 617, 1285, 1294
BstNSI RCATGY 1 cut(s) 1175
BstSCI CCNGG 3 cut(s) 106, 544, 1371
BstSFI CTRYAG 1 cut(s) 641
BstSLI GKGCMC 1 cut(s) 1378
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 9 cut(s) 23, 64, 555, 694, 793, 852, 1030, 1033, 1141
BstV2I GAAGAC 3 cut(s) 42, 561, 645
BstX2I RGATCY 3 cut(s) 811, 1002, 1064
BstXI CCANNNNNNTGG 1 cut(s) 956
BstYI RGATCY 3 cut(s) 811, 1002, 1064
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 3 cut(s) 759, 879, 1376
BtgI CCRYGG 1 cut(s) 955
BtgZI GCGATG 1 cut(s) 906
BtrI CACGTC 1 cut(s) 1083
BtsCI GGATG 8 cut(s) 27, 372, 444, 587, 620, 746, 859, 913
Cac8I GCNNGC 3 cut(s) 176, 645, 1134
CaiI CAGNNNCTG 1 cut(s) 1322
CciI TCATGA 4 cut(s) 58, 76, 462, 487
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 1374, 1375
CseI GACGC 1 cut(s) 1199
Csp6I GTAC 4 cut(s) 298, 767, 1175, 1387
CviQI GTAC 4 cut(s) 298, 767, 1175, 1387
DdeI CTNAG 3 cut(s) 648, 1293, 1360
DriI GACNNNNNGTC 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 757
Eam1105I GACNNNNNGTC 1 cut(s) 562
EciI GGCGGA 2 cut(s) 1066, 1266
Eco130I CCWWGG 2 cut(s) 227, 955
Eco24I GRGCYC 1 cut(s) 1378
Eco31I GGTCTC 2 cut(s) 535, 582
Eco32I GATATC 1 cut(s) 503
Eco47III AGCGCT 1 cut(s) 179
Eco57I CTGAAG 2 cut(s) 150, 852
Eco88I CYCGRG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 1375
EcoRI GAATTC 1 cut(s) 847
EcoRV GATATC 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 227, 955
EcoT38I GRGCYC 1 cut(s) 1378
ErhI CCWWGG 2 cut(s) 227, 955
FaqI GGGAC 1 cut(s) 1358
FauI CCCGC 1 cut(s) 836
FbaI TGATCA 2 cut(s) 73, 979
FokI GGATG 8 cut(s) 34, 379, 431, 574, 607, 733, 866, 900
FriOI GRGCYC 1 cut(s) 1378
FspBI CTAG 2 cut(s) 413, 453
GlaI GCGC 1 cut(s) 179
GsaI CCCAGC 1 cut(s) 1233
GsuI CTGGAG 1 cut(s) 1237
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 3 cut(s) 759, 879, 1376
HapII CCGG 8 cut(s) 107, 301, 354, 364, 388, 546, 1062, 1372
HgaI GACGC 1 cut(s) 1199
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 1243
HindII GTYRAC 1 cut(s) 1243
HindIII AAGCTT 1 cut(s) 1164
HinfI GANTC 5 cut(s) 41, 370, 963, 1110, 1351
HpaI GTTAAC 1 cut(s) 1243
HpaII CCGG 8 cut(s) 107, 301, 354, 364, 388, 546, 1062, 1372
HphI GGTGA 4 cut(s) 112, 938, 944, 1022
Hpy166II GTNNAC 2 cut(s) 535, 1243
Hpy188I TCNGA 6 cut(s) 285, 449, 853, 932, 1333, 1363
Hpy8I GTNNAC 2 cut(s) 535, 1243
Hpy99I CGWCG 2 cut(s) 568, 1288
HpyAV CCTTC 3 cut(s) 164, 256, 827
HpyCH4III ACNGT 3 cut(s) 698, 1056, 1284
HpyCH4IV ACGT 2 cut(s) 1082, 1236
HpyCH4V TGCA 4 cut(s) 11, 620, 643, 1018
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 248, 356, 602, 608, 617, 1285, 1294
HpyF3I CTNAG 3 cut(s) 648, 1293, 1360
HpySE526I ACGT 2 cut(s) 1082, 1236
HspAI GCGC 1 cut(s) 178
Ksp22I TGATCA 2 cut(s) 73, 979
KspAI GTTAAC 1 cut(s) 1243
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 9 cut(s) 23, 64, 555, 694, 793, 852, 1030, 1033, 1141
LweI GCATC 5 cut(s) 64, 93, 453, 629, 1033
MaeI CTAG 2 cut(s) 413, 453
MaeII ACGT 2 cut(s) 1082, 1236
MaeIII GTNAC 3 cut(s) 325, 856, 1318
MboII GAAGA 9 cut(s) 44, 47, 143, 146, 415, 566, 645, 1059, 1094
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 3 cut(s) 811, 1002, 1064
MhlI GDGCHC 1 cut(s) 1378
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 5 cut(s) 6, 724, 847, 906, 1117
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 3 cut(s) 50, 972, 1104
MmeI TCCRAC 2 cut(s) 1167, 1356
Mox20I TGGCCA 1 cut(s) 759
MscI TGGCCA 1 cut(s) 759
MseI TTAA 4 cut(s) 671, 693, 729, 1242
MslI CAYNNNNRTG 4 cut(s) 90, 101, 954, 975
Msp20I TGGCCA 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 843
MspI CCGG 8 cut(s) 107, 301, 354, 364, 388, 546, 1062, 1372
MspR9I CCNGG 3 cut(s) 108, 546, 1373
MunI CAATTG 1 cut(s) 6
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 8 cut(s) 11, 248, 356, 602, 608, 617, 1285, 1294
NciI CCSGG 3 cut(s) 108, 546, 1373
NcoI CCATGG 1 cut(s) 955
NlaIV GGNNCC 5 cut(s) 358, 813, 1272, 1376, 1377
NmeAIII GCCGAG 1 cut(s) 554
NmuCI GTSAC 2 cut(s) 325, 856
NspI RCATGY 1 cut(s) 1175
NspV TTCGAA 1 cut(s) 373
PagI TCATGA 4 cut(s) 58, 76, 462, 487
PciI ACATGT 1 cut(s) 1171
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 2 cut(s) 370, 1351
PleI GAGTC 3 cut(s) 49, 971, 1104
PpsI GAGTC 3 cut(s) 49, 971, 1104
PscI ACATGT 1 cut(s) 1171
PspFI CCCAGC 1 cut(s) 1229
PspN4I GGNNCC 5 cut(s) 358, 813, 1272, 1376, 1377
PspOMI GGGCCC 1 cut(s) 1374
PspPI GGNCC 2 cut(s) 1374, 1375
PstI CTGCAG 1 cut(s) 645
PstNI CAGNNNCTG 1 cut(s) 1322
PsuI RGATCY 3 cut(s) 811, 1002, 1064
RsaI GTAC 4 cut(s) 299, 768, 1176, 1388
RsaNI GTAC 4 cut(s) 298, 767, 1175, 1387
RseI CAYNNNNRTG 4 cut(s) 90, 101, 954, 975
SaqAI TTAA 4 cut(s) 671, 693, 729, 1242
Sau96I GGNCC 2 cut(s) 1374, 1375
SchI GAGTC 3 cut(s) 50, 972, 1104
ScrFI CCNGG 3 cut(s) 108, 546, 1373
SduI GDGCHC 1 cut(s) 1378
SfaNI GCATC 5 cut(s) 64, 93, 453, 629, 1033
SfcI CTRYAG 1 cut(s) 641
SfuI TTCGAA 1 cut(s) 373
SmiMI CAYNNNNRTG 4 cut(s) 90, 101, 954, 975
Sse9I AATT 5 cut(s) 6, 724, 847, 906, 1117
SspI AATATT 1 cut(s) 901
SspMI CTAG 2 cut(s) 413, 453
StyD4I CCNGG 3 cut(s) 106, 544, 1371
StyI CCWWGG 2 cut(s) 227, 955
TaaI ACNGT 3 cut(s) 698, 1056, 1284
TaiI ACGT 2 cut(s) 1085, 1239
TaqI TCGA 5 cut(s) 44, 189, 207, 373, 975
TaqII GACCGA 1 cut(s) 564
TasI AATT 5 cut(s) 6, 724, 847, 906, 1117
TatI WGTACW 3 cut(s) 766, 1174, 1386
TauI GCSGC 5 cut(s) 251, 599, 602, 605, 1045
TfiI GAWTC 2 cut(s) 370, 1351
Tru1I TTAA 4 cut(s) 671, 693, 729, 1242
Tru9I TTAA 4 cut(s) 671, 693, 729, 1242
TseFI GTSAC 2 cut(s) 325, 856
TseI GCWGC 9 cut(s) 11, 52, 568, 682, 806, 840, 1018, 1021, 1129
Tsp45I GTSAC 2 cut(s) 325, 856
TspDTI ATGAA 4 cut(s) 479, 504, 767, 899
TspGWI ACGGA 2 cut(s) 872, 1323
XapI RAATTY 1 cut(s) 847
XceI RCATGY 1 cut(s) 1175
XspI CTAG 2 cut(s) 413, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.